View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9122_low_30 (Length: 319)
Name: NF9122_low_30
Description: NF9122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9122_low_30 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 15 - 319
Target Start/End: Original strand, 45466762 - 45467066
Alignment:
| Q |
15 |
catcatggtgttcgaattcaagatcgtgcgattgtagttgcagctcaattgtctagtcggtacataaccggtatgtgtttttggtattgattttttatgt |
114 |
Q |
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| T |
45466762 |
catcatggtgttcgaattcaagatcgcgcgattgtagttgcagctcaattgtctagtcggtacataaccggtatgtgtttttggtattgattttttatgt |
45466861 |
T |
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| Q |
115 |
attgaatgtgatgatttcacttgtggttatgctaacatggtatgtgttttgtatttgttaagggcgtcatctacctgacaaggccattgatttagttgat |
214 |
Q |
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| T |
45466862 |
attgaatgtgatgatttcacttgtggttatgctaacatggtatgcgttttgtatttgttaagggcgtcatctacctgacaaggccattgatttagttgat |
45466961 |
T |
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| Q |
215 |
gaggcatgtgctaatgtgagagttcaacttgatagtcaacctgaggaaattgacaatcttgaaaggaagagaatgcaattagaagttgaactgcatgctc |
314 |
Q |
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| T |
45466962 |
gaggcatgtgctaatgtgagagttcaacttgatagtcaacctgaggaaattgacaatcttgaaaggaagagaatgcaattagaagttgaactgcatgctc |
45467061 |
T |
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| Q |
315 |
tagag |
319 |
Q |
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| T |
45467062 |
tagag |
45467066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 108 - 313
Target Start/End: Original strand, 10045002 - 10045212
Alignment:
| Q |
108 |
tttatgtattgaatgtg-atgatttcacttgtggttatgctaacatggtatgt----gttttgtatttgttaagggcgtcatctacctgacaaggccatt |
202 |
Q |
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| T |
10045002 |
tttatgtattgaatgtggatggtttttgttgtggttttgctaacatggtatgtttctgttttgtgtttgttaagggcgtcgtcttcctgataaggcaatt |
10045101 |
T |
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| Q |
203 |
gatttagttgatgaggcatgtgctaatgtgagagttcaacttgatagtcaacctgaggaaattgacaatcttgaaaggaagagaatgcaattagaagttg |
302 |
Q |
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| T |
10045102 |
gatttagttgacgaggcttgtgcaaatgttagagttcaacttgacagtcagccagaggaaattgacaaccttgaaaggaagagaatgcaactggaagtgg |
10045201 |
T |
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| Q |
303 |
aactgcatgct |
313 |
Q |
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|||| |||||| |
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| T |
10045202 |
aacttcatgct |
10045212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 10044650 - 10044723
Alignment:
| Q |
15 |
catcatggtgttcgaattcaagatcgtgcgattgtagttgcagctcaattgtctagtcggtacataaccggtat |
88 |
Q |
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| T |
10044650 |
catcatggtgttcgaattcaagaccgtgcaattgttgttgcagctcagatgtctagtcggtacataactggtat |
10044723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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