View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9122_low_33 (Length: 318)

Name: NF9122_low_33
Description: NF9122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9122_low_33
NF9122_low_33
[»] chr8 (4 HSPs)
chr8 (11-130)||(41841390-41841509)
chr8 (221-317)||(41841955-41842051)
chr8 (14-135)||(42221082-42221203)
chr8 (173-214)||(42221251-42221292)
[»] chr5 (1 HSPs)
chr5 (14-221)||(1716689-1716906)
[»] chr4 (3 HSPs)
chr4 (133-222)||(11652665-11652754)
chr4 (11-135)||(3461378-3461499)
chr4 (184-221)||(3461557-3461594)
[»] chr2 (1 HSPs)
chr2 (14-68)||(2841259-2841313)


Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 41841390 - 41841509
Alignment:
Q  11 cagagaccaaattccaagcaaaggatacgtgatttgagcttccaacaaggacaaatctcatgtcaacgatatattttacagattttgagaagctcaccaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41841390 cagagaccaaattccaagcaaaggatacgtgatttgagcttccaacaaggacaaatctcatgtcaacgatatattttacagattttgagaagctcaccaa 41841489  T
Q  111 tgattatttttaattgctgg 130  Q
    ||||||||||||||||||||    
T  41841490 tgattatttttaattgctgg 41841509  T

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Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 221 - 317
Target Start/End: Original strand, 41841955 - 41842051
Alignment:
Q  221 ccatagaatctgccgatacgaagctactggagccattaggaggaaatgaggaatggtataagatcttcatcctttcactttgcgttcctctcttttt 317  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  41841955 ccatagaatctgccgatacgaagctactggagccataaggaggaaatgaggaatggtataagatcttcatcctttcactttgagttcctctcatttt 41842051  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 42221082 - 42221203
Alignment:
Q  14 agaccaaattccaagcaaaggatacgtgatttgagcttccaacaaggacaaatctcatgtcaacgatatattttacagattttgagaagctcaccaatga 113  Q
    ||||||| |||||| |||||||||  ||||||||||||||||||||||||||||||||| |||| |||  |||||||||||||||||||||| |||||||    
T  42221082 agaccaatttccaaacaaaggatatatgatttgagcttccaacaaggacaaatctcatgccaacaatacgttttacagattttgagaagctctccaatga 42221181  T
Q  114 ttatttttaattgctggatgaa 135  Q
     ||||||||||  |||||||||    
T  42221182 atatttttaatccctggatgaa 42221203  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 42221251 - 42221292
Alignment:
Q  173 attgaatttgagtctttcttcttcctccttttcttctaattc 214  Q
    ||||| |||||||||||||||| |||| ||||||||||||||    
T  42221251 attgagtttgagtctttcttctccctctttttcttctaattc 42221292  T

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Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 1716689 - 1716906
Alignment:
Q  14 agaccaaattccaagcaaaggatacgtgatttgagcttccaacaaggacaaatctcatgtcaacgatatattttacagattttgagaagctcaccaatga 113  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||| |||||||    
T  1716689 agaccaatttccaaacaaaggatacgtgatttgagcttccaacaaggacaaatctcatgccaacaatacattttacagattttgagaagctctccaatga 1716788  T
Q  114 ttatttttaattgctggatgaatggaaagggaattaaaa------tataatgatggc-----tactgtgcattgaatttgagtctttcttcttcctcctt 202  Q
     ||||||||||  ||||||||| |||||  ||||  |||       | |||||||||     | || || ||||| |||||||||||||||| |||||||    
T  1716789 atatttttaatccctggatgaa-ggaaaatgaatggaaagcgaataaaaatgatggctgcagtcctatgaattgagtttgagtctttcttctccctcctt 1716887  T
Q  203 ttcttctaattccaaactc 221  Q
    |||||||||||||||||||    
T  1716888 ttcttctaattccaaactc 1716906  T

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Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 11652665 - 11652754
Alignment:
Q  133 gaatggaaagggaattaaaatataatgatggctactgtgcattgaatttgagtctttcttcttcctccttttcttctaattccaaactcc 222  Q
    |||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11652665 gaatggaaagggaattgaaatataatgttggctactgtgaattgaatttgagtctttcttctccctccttttcttctaattccaaactcc 11652754  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 3461378 - 3461499
Alignment:
Q  11 cagagaccaaattccaagcaaaggatacgtgatttgagcttccaacaaggacaaatctcatgtcaacgatatattttacagattttgagaagctcaccaa 110  Q
    |||||||||| || |||||||||||||| |||||||||||||||||||||||||||||  || ||   ||| ||||||||||||||||||||||| ||||    
T  3461378 cagagaccaactttcaagcaaaggatacatgatttgagcttccaacaaggacaaatcttttgcca---atacattttacagattttgagaagctctccaa 3461474  T
Q  111 tgattatttttaattgctggatgaa 135  Q
    ||| |||||||||| ||| ||||||    
T  3461475 tgaatatttttaatcgctagatgaa 3461499  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 3461557 - 3461594
Alignment:
Q  184 gtctttcttcttcctccttttcttctaattccaaactc 221  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  3461557 gtctttcttctcccttcttttcttctaattccaaactc 3461594  T

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Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 2841259 - 2841313
Alignment:
Q  14 agaccaaattccaagcaaaggatacgtgatttgagcttccaacaaggacaaatct 68  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  2841259 agaccaatttccaagcaaaggatgcgtgatttgagcttccaacaaggacaaatct 2841313  T

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