View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9122_low_38 (Length: 290)
Name: NF9122_low_38
Description: NF9122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9122_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 6073338 - 6073611
Alignment:
| Q |
1 |
atggtggcggtgacggagagagtgcaaatctccaccggaacaaaactccataacaatgcaagagaaatgagaagcttcaaactcagcatagagactagga |
100 |
Q |
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| T |
6073338 |
atggtggcggtgacggagagagtgcaaatctccaccggaacaaaactccataacaatgcaagagaaatgagaagcttcaaactcagcatagagactagga |
6073437 |
T |
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| Q |
101 |
agaaaaggatgatcaagcatcttaagtatctttctctccatttccgctctatgagactttttcttaagagcaacagcgtccttatcaacaaccttcatgg |
200 |
Q |
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| T |
6073438 |
agaaaaggatgatcaagcatcttaagtatctttctctccatttccgctctatgagactttttcttaagagcaacagcgtccttatcaacaaccttcatgg |
6073537 |
T |
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| Q |
201 |
cgtagaaggaagtgttatcatcgtaaaggagttcatttgcggaggagtcacggaggcgacagaggtaaacggtg |
274 |
Q |
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| T |
6073538 |
cgtagaaggaagtgttatcatcgtaaaggagttcatttgaggaggagtcacggaggcgacagaggtaaacggtg |
6073611 |
T |
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Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 37170412 - 37170216
Alignment:
| Q |
23 |
tgcaaatctccaccggaacaaaactccataacaatgcaagagaaatgagaagcttcaaactcagcatagagactaggaagaaaaggatgatcaagcatct |
122 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| | |
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| T |
37170412 |
tgcaagtcaccaccggaacaaaactccataacaatgcaagagaaatgagaagcttcaaactcagcgtagagtgtaggaagaaaaggatgatcaagcattt |
37170313 |
T |
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| Q |
123 |
taagtatctttctctccatttccgctctatgagactttttcttaagagcaacagcgtccttatcaacaaccttcatggcgtagaaggaagtgttatc |
219 |
Q |
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| T |
37170312 |
tcagaatctttctctccatttcagctctatgtgatttcttctttaatgcaacaacgtctttatccacaaccttcatcgcatacaaacaagtgttatc |
37170216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 46833791 - 46833695
Alignment:
| Q |
25 |
caaatctccaccggaacaaaactccataacaatgcaagagaaatgagaagcttcaaactcagcatagagactaggaagaaaaggatgatcaagcatc |
121 |
Q |
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|||||| ||||| | ||||||||||||||| | |||||| |||||||||| ||||| |||| ||| | | |||| | ||||||||||||||||||| |
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| T |
46833791 |
caaatcaccaccaggacaaaactccataaccaaacaagagtaatgagaagcatcaaaatcagtatacaaagtaggtaaaaaaggatgatcaagcatc |
46833695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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