View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9122_low_4 (Length: 571)
Name: NF9122_low_4
Description: NF9122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9122_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 161 - 554
Target Start/End: Complemental strand, 44693324 - 44692931
Alignment:
| Q |
161 |
gctacatcacgaacagcactaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaa |
260 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44693324 |
gctacatcacgaacagcaccaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaa |
44693225 |
T |
|
| Q |
261 |
ggaccatatccatgacatcttttgcacttggccctggtacattctctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44693224 |
ggaccatatccatgacatcttttgcacttggccctggtacattctctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacg |
44693125 |
T |
|
| Q |
361 |
agcaatacccatcccagagagatatttagactcagcctcaccctcggctcgctttatttgcaagattttctctgcttcagccttctcattagctgcgatc |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44693124 |
agcaatacccatcccagagagatatttagactcagcctcaccctcggctcgctttatttgcaagattttctctgcttcagccttctcattagctgcgatc |
44693025 |
T |
|
| Q |
461 |
ctcattcttgcagctaatcatagacaggaaacggtaaatgaaaatatggtaatccaagagcaaaggagatatttggcacatagcactaggtaat |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44693024 |
ctcattcttgcagctaatcatagacaggaaacggtaaatgaaaatatggtaatccaagagcaaaggagatatttggcacatagcactaggtaat |
44692931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 164 - 550
Target Start/End: Complemental strand, 44632924 - 44632538
Alignment:
| Q |
164 |
acatcacgaacagcactaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaagga |
263 |
Q |
| |
|
||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44632924 |
acatcgcgaacagcgccaggtccatgtggaatgaacacagcagaagacttggaggcagccccaatttctttcaaagtgtcaaagtattgagtgacaagga |
44632825 |
T |
|
| Q |
264 |
ccatatccatgacatcttttgcacttggccctggtacattctctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacgagc |
363 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| | || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
44632824 |
ccatatccatgacatcttttgcacttgtccctggtacattaaccgagaatccaatcacactgtctctcaaaccatccacaatggcttgacgttggcgagc |
44632725 |
T |
|
| Q |
364 |
aatacccatcccagagagatatttagactcagcctcaccctcggctcgctttatttgcaagattttctctgcttcagccttctcattagctgcgatcctc |
463 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || || ||||| |||||||| | |||| |
|
|
| T |
44632724 |
aatacccatcccagagagatatttggactcagcctcaccctcggctcgctttatttgcaagatcttctctgcctccgctttctccttagctgctaacctc |
44632625 |
T |
|
| Q |
464 |
attcttgcagctaatcatagacaggaaacggtaaatgaaaatatggtaatccaagagcaaaggagatatttggcacatagcactagg |
550 |
Q |
| |
|
|||||||||||| || | |||||| || | ||| | |||||||||| ||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
44632624 |
attcttgcagctgatgaaagacagaaaccagtataagaaaatatggcaatccaagaacaaagtagatatttggcacatagcactagg |
44632538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 161 - 538
Target Start/End: Complemental strand, 44654793 - 44654415
Alignment:
| Q |
161 |
gctacatcacgaacagcactaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaa |
260 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44654793 |
gctacatcacgaacagcaccaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaa |
44654694 |
T |
|
| Q |
261 |
ggaccatatccatgacatcttttgcacttggccctggtacattctctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacg |
360 |
Q |
| |
|
|||||||||||||||||||||||||| | | |||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| || || |
|
|
| T |
44654693 |
ggaccatatccatgacatcttttgcagtcgtccctggtacattaactgaaaatccaatcacactgtctctcaaaccatccacaatcgcttgacgctggcg |
44654594 |
T |
|
| Q |
361 |
agcaatacccatcccagagagatatttagactcagcctcaccctcggctcgctttatttgcaagattttctctgcttcagccttctcattagctgcgatc |
460 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | | |
|
|
| T |
44654593 |
agcaatacccaacccagagagatatttagactcagcctcaccctcggctcgcttaatttgcaagattttctctgcttcagccttctctttagctgccaac |
44654494 |
T |
|
| Q |
461 |
ctcattcttgcagctaatca-tagacaggaaacggtaaatgaaaatatggtaatccaagagcaaaggagatatttggca |
538 |
Q |
| |
|
||||||||||||||| |||| |||||| |||| ||| | |||||||||| ||| || ||||||||||||||||| |
|
|
| T |
44654493 |
ctcattcttgcagctgatcacaagacagaaaacagtataagaaaatatggcaatttgggaataaaggagatatttggca |
44654415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 161 - 509
Target Start/End: Complemental strand, 44683592 - 44683243
Alignment:
| Q |
161 |
gctacatcacgaacagcactaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaa |
260 |
Q |
| |
|
||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44683592 |
gctacatcacgaacagcgccaggtccgtgtggaatgaacacagcagaagacttggaggcagccccaatttctttcatagtgtcaaagtattgagtgacaa |
44683493 |
T |
|
| Q |
261 |
ggaccatatccatgacatcttttgcacttggccctggtacattctctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacg |
360 |
Q |
| |
|
|||||||||||||||||||||||||| | | |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| || || |
|
|
| T |
44683492 |
ggaccatatccatgacatcttttgcagtcgtccctggtacattaactgaaaatccaatcacactgtctctcaaaccatccacaatggcttgacgctggcg |
44683393 |
T |
|
| Q |
361 |
agcaatacccatcccagagagatatttagactcagcctcaccctcggctcgctttatttgcaagattttctctgcttcagccttctcattagctgcgatc |
460 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | | |
|
|
| T |
44683392 |
agcaatacccaacccagagagatatttagactcagcctcaccctcggctcgcttaatttgcaagattttctctgcttcagccttctctttagctgccaac |
44683293 |
T |
|
| Q |
461 |
ctcattcttgcagctaatca-tagacaggaaacggtaaatgaaaatatgg |
509 |
Q |
| |
|
||||||||||||||| |||| |||||| |||| ||| | |||||||||| |
|
|
| T |
44683292 |
ctcattcttgcagctgatcacaagacagaaaacagtataagaaaatatgg |
44683243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 162 - 552
Target Start/End: Original strand, 44635916 - 44636306
Alignment:
| Q |
162 |
ctacatcacgaacagcactaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaag |
261 |
Q |
| |
|
||||||| |||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44635916 |
ctacatcgcgaacagcaccaggtccgtgtggaatgaacacagcagaagatttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaag |
44636015 |
T |
|
| Q |
262 |
gaccatatccatgacatcttttgcacttggccctggtacattctctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacga |
361 |
Q |
| |
|
||||| ||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44636016 |
gaccaaatccatgacatctttagcacttgtccctggtacattaactgaaaatccaatcacactgtctctcaaaccatccacaatggcttgacgttgacga |
44636115 |
T |
|
| Q |
362 |
gcaatacccatcccagagagatatttagactcagcctcaccctcggctcgctttatttgcaagattttctctgcttcagccttctcattagctgcgatcc |
461 |
Q |
| |
|
|||||||||| |||| |||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||| || ||||| || |||||||| | | |
|
|
| T |
44636116 |
gcaatacccaccccatggagatatttagattcagcctcaccctcggctcgctttacttgcaagatcttctctgcctctgccttttctttagctgccactc |
44636215 |
T |
|
| Q |
462 |
tcattcttgcagctaatcatagacaggaaacggtaaatgaaaatatggtaatccaagagcaaaggagatatttggcacatagcactaggta |
552 |
Q |
| |
|
|||||||||||||| ||| |||||| || | ||| | |||||||||| ||||||||| |||| ||||||| |||| | |||||| |||| |
|
|
| T |
44636216 |
tcattcttgcagctgatcgaagacagaaaccagtataagaaaatatggcaatccaagaacaaaatagatattaggcataaagcactcggta |
44636306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 161 - 369
Target Start/End: Complemental strand, 44625638 - 44625430
Alignment:
| Q |
161 |
gctacatcacgaacagcactaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaa |
260 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44625638 |
gctacatcacgaacagcaccaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaa |
44625539 |
T |
|
| Q |
261 |
ggaccatatccatgacatcttttgcacttggccctggtacattctctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacg |
360 |
Q |
| |
|
|||||||||||||||||||||||||| | | |||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| || || |
|
|
| T |
44625538 |
ggaccatatccatgacatcttttgcagtcgtccctggtacattaactgaaaatccaatcacactgtctctcaaaccatccacaatcgcttgacgctggcg |
44625439 |
T |
|
| Q |
361 |
agcaatacc |
369 |
Q |
| |
|
||||||||| |
|
|
| T |
44625438 |
agcaatacc |
44625430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 44693842 - 44693695
Alignment:
| Q |
20 |
catataacatactgaagcagggttacactactaaactcacaaacctaacccatcagagaac----gagtattcaaacactacagttgaagtgttatgttc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44693842 |
catataacatactgaagcagggttacactactaaactcacaaacctaacccatcagagaacaagtgagtattcaaacactacagttgaagtgttatgttc |
44693743 |
T |
|
| Q |
116 |
actcttgtatctccaaacttcaccttattgtggtcaatagctgttgct |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44693742 |
actcttgtatctccaaacttcaccttattgtggtcaatagctgttgct |
44693695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 173 - 475
Target Start/End: Complemental strand, 3205311 - 3205009
Alignment:
| Q |
173 |
acagcactaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaaggaccatatcca |
272 |
Q |
| |
|
||||||| ||| ||||||||||||||||||| || || || |||| ||||||||||| ||||| ||||| ||||||||||| || | ||||| |||| |
|
|
| T |
3205311 |
acagcaccaggaccatgtggaatgaacacagatgacgattttgaggatgcaccaatttccttcatggtgtcgaagtattgagtcaccaacaccatgtcca |
3205212 |
T |
|
| Q |
273 |
tgacatcttttgcacttggccctggtacattctctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacgagcaatacccat |
372 |
Q |
| |
|
|||||||||| ||| ||| || || ||||||||||| ||| ||| ||| |||||||||| || || ||||| ||||||||||| ||||| ||||| | |
|
|
| T |
3205211 |
tgacatctttagcagttgttccgggaacattctctgagaatgcaagcacgctgtctctcagtccgtcaacaattgcttgacgttggcgagctataccgag |
3205112 |
T |
|
| Q |
373 |
cccagagagatatttagactcagcctcaccctcggctcgctttatttgcaagattttctctgcttcagccttctcattagctgcgatcctcattcttgca |
472 |
Q |
| |
|
|| || |||||||| |||||||| || || || ||| ||| || ||||| || || ||||||||||||||||| || || || | ||||||||||||| |
|
|
| T |
3205111 |
tcctgacagatatttggactcagcttctccttcagctttcttgatctgcaatatcttttctgcttcagccttctcgttcgcagccaacctcattcttgca |
3205012 |
T |
|
| Q |
473 |
gct |
475 |
Q |
| |
|
||| |
|
|
| T |
3205011 |
gct |
3205009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 5555838 - 5555805
Alignment:
| Q |
85 |
attcaaacactacagttgaagtgttatgttcact |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
5555838 |
attcaaacacaacagttgaagtgttatgttcact |
5555805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 5013623 - 5013552
Alignment:
| Q |
81 |
gagtattcaaacacta-cagttgaagtgttatgttcactcttgtatctccaaacttcaccttattgtggtca |
151 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |||||||| | || |||||| |||||| |
|
|
| T |
5013623 |
gagtattcaaacactaacagttgaagtgttatgttcactcttgtgtctccaaattccatcttattctggtca |
5013552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University