View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9122_low_40 (Length: 289)
Name: NF9122_low_40
Description: NF9122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9122_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 99 - 272
Target Start/End: Complemental strand, 41842249 - 41842076
Alignment:
| Q |
99 |
ttgttcactgttttagaaacttattttgtctggttactgtgcatatgtcggattttgcaccatgaaaatggtgctacattgcacagaatggtgattgatt |
198 |
Q |
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| T |
41842249 |
ttgttcactgttttagaaacttattttgtctggttactgtgcatatgtcggattttgcaccatgaaaatggtgctacattgcacagaatggggattgatt |
41842150 |
T |
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| Q |
199 |
ccgagaaagactattcgggaaagtttgctatgggatcgagtgtgattctctcacatgttcttcttagagaagag |
272 |
Q |
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| T |
41842149 |
ccgagaaagactattcgggaaagtttgctatgggatcgagtgtgattctttcacatcttcttcttagagaagag |
41842076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 41842357 - 41842269
Alignment:
| Q |
18 |
gaaacagcctaacagaatagaaaaaagttgatttcaatagcaccatttcatcctcaacaagatttcttgagttattgttagttgttcac |
106 |
Q |
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| T |
41842357 |
gaaacagcctaacaaaatagaaaaaagttgatttcaatagcaccatttcatcctcaacaagatttcttgagttattgttagttgttcac |
41842269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 42090111 - 42090198
Alignment:
| Q |
18 |
gaaacagcctaacagaatagaaaaaagttgatttcaatagcaccatttcatcctcaacaagatttcttgagttattgttagttgttcac |
106 |
Q |
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| T |
42090111 |
gaaacagcccaacagaatagaaaa-agttgattcccatatcaccatttcatcctcaacaagttttcttgggttattattagttgttcac |
42090198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 229
Target Start/End: Original strand, 42090224 - 42090350
Alignment:
| Q |
105 |
actgttttagaaacttattttgtctggttactgtg--catatgtcggattttgcaccatgaaaatggtgctacattgcacagaatggtgattgattccga |
202 |
Q |
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| T |
42090224 |
actgttttagaaacttgcttcatcttgttactgtgaacatatgttagatttgacaccatgaaaattgtgctacattgcgaacagtagggattgattccga |
42090323 |
T |
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| Q |
203 |
gaaagactattcgggaaagtttgctat |
229 |
Q |
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| T |
42090324 |
gaaagagtattcgggaaagtttgctat |
42090350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 11653109 - 11653021
Alignment:
| Q |
18 |
gaaacagcctaacagaatagaaaaaagttgatttcaatagcaccatttcatcctcaacaagatttcttgagttattgttagttgttcac |
106 |
Q |
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| T |
11653109 |
gaaacagcctaacagaatagaaaaaagttgatttcaatagcaccgtttcatcctcaacaagatttcttgagttattgttagttgttcac |
11653021 |
T |
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