View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9122_low_45 (Length: 275)

Name: NF9122_low_45

Description: NF9122

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF9122_low_45

[»] chr5 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 141; E-Value: 5e-74

Query Start/End: Original strand, 97 - 260

Target Start/End: Complemental strand, 35909856 - 35909695

Alignment:

Q	97	tttagaactagctttgctaatggttgacaagtatcacaaacaagcttgttcattaacaacattctcccatatgactgacttagaaatagtaaagtgttat	196	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35909856	tttagaactagctttgctaatgtttgacaagtatcacaaacaagcttgttcattaacaacattctcccatatgactgacttagaaatagtaaagtgttat	35909757	T

Q	197	cagtgtaaacactgaacttgagattgtgtggcatccactagaatcttgtacaatccaaccattt	260	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|
T	35909756	cagtgtaaacactgaacttgagat--tgtggcatccactagaatcttgtacattccaaacattt	35909695	T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 29; E-Value: 0.0000004

Query Start/End: Original strand, 30 - 90

Target Start/End: Original strand, 32494501 - 32494561

Alignment:

Q	30	tggttgatttctcgagaaatgttgcgaatccacctccagtctccttgttgtagacttgctc	90	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32494501	tggttgatttctcaacaactgctgtgaatccacctttaatctccttgttgtagacttgctc	32494561	T

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