View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9122_low_46 (Length: 275)
Name: NF9122_low_46
Description: NF9122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9122_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 55162217 - 55161972
Alignment:
| Q |
12 |
cagagagacaaaactataattagattcttctatatatcttttaatatataccttacctatgagacaccaaatt-----gtttttaatttgaagtgtgagt |
106 |
Q |
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| T |
55162217 |
cagagagacaaaactataattagattcttctatatatcttttaatatatacct-----atgagacaccaaattaaattgtttttaatttgaagtgtgagt |
55162123 |
T |
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| Q |
107 |
gctgaagtgaagattagcttggactgactcacagtgttgatgatatattgttggttgattctccattggtgatgagtaaatggctgcagtgattgacttg |
206 |
Q |
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| T |
55162122 |
gctgaagtgaagattagcttggactgactcacagtgttgatgatatattgttggttgattctccattggtgctgagtaaatggctgcaatgattgacttg |
55162023 |
T |
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| Q |
207 |
ctatatctatatccacatcttttccatctgagttatgaaagaagatggtag |
257 |
Q |
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| T |
55162022 |
ctatatctatatccacatcttttccatctgagttatgaaagaagatggtag |
55161972 |
T |
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