View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9122_low_48 (Length: 248)
Name: NF9122_low_48
Description: NF9122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9122_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 35909667 - 35909436
Alignment:
| Q |
1 |
atttggaatcttgtatgatacattgtgaataagaaaattcaagattgcaataagagtgattgtatagttgtaaaactgatatcaaatttaaagaaaaatg |
100 |
Q |
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| T |
35909667 |
atttggaatcttgtatgatacattgtgaataagaaaattcaagattgcaataagagtgattgtatagttgtaaaactgatatcaaatttaaagaaaaatg |
35909568 |
T |
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| Q |
101 |
tggtaataataagattcatttgttttatgaccaaaatgagctttggagctaacatgattggtttgatgttgaggcaccttatcagaatagagggaccaag |
200 |
Q |
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| T |
35909567 |
tggtaatagtaagattaatttgttttatgaccaaaatgagctttggagct-acatgattggtttgatgttgaggcaccttatcagaatagagggaccaag |
35909469 |
T |
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| Q |
201 |
gctacaagactgtcaaactgctcttgaataaac |
233 |
Q |
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| T |
35909468 |
gctacaagactgtcaaactgctcttgaataaac |
35909436 |
T |
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