View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9122_low_51 (Length: 236)
Name: NF9122_low_51
Description: NF9122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9122_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 5848550 - 5848763
Alignment:
| Q |
1 |
attgggagattattactaatgctcctgcagaccagtgtgatgattatgccttgtgcggtatcaactctaactgcaatattaataactttccaatatgtga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5848550 |
attgggagattattactaatgctcctgcagaccagtgtgatgattatgccttgtgcggtatcaactctaactgcaatattaataactttccaatatgtga |
5848649 |
T |
|
| Q |
101 |
atgcttggaaggtttcatgccaaaatttcaaccaaaatggaagtcattgaattggtctggtgggtgcctcaggagaacaaaattgaattgtcacactggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5848650 |
atgcttggaaggtttcatgccaaaatttcaaccaaaatggaagtcattgaattggtctggtgggtgcctcaggagaacaaaattgaattgtcacactggg |
5848749 |
T |
|
| Q |
201 |
gatggctttctgaa |
214 |
Q |
| |
|
|||||||||||||| |
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|
| T |
5848750 |
gatggctttctgaa |
5848763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 5853873 - 5854016
Alignment:
| Q |
23 |
tcctgcagaccagtgtgatgattatgccttgtgcggtatcaactctaactgcaatattaataactttccaatatgtgaatgcttggaaggtttcatgcca |
122 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5853873 |
tcctgcagaccaatgtgataattatgccttgtgcggtatcaactctaactgcaatagtaataactttccaacatgtgaatgcttggaaggtttcatgcca |
5853972 |
T |
|
| Q |
123 |
aaatttcaaccaaaatggaagtcattgaattggtctggtgggtg |
166 |
Q |
| |
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|||||||||||| | ||| |||||| ||||||||||||||||| |
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|
| T |
5853973 |
aaatttcaaccagagtgggagtcatcaaattggtctggtgggtg |
5854016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 29 - 214
Target Start/End: Original strand, 5827849 - 5828034
Alignment:
| Q |
29 |
agaccagtgtgatgattatgccttgtgcggtatcaactctaactgcaatattaataactttccaatatgtgaatgcttggaaggtttcatgccaaaattt |
128 |
Q |
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|||||||||||| ||||||||||| || |||| ||||| || |||||||||||| | |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5827849 |
agaccagtgtgaagattatgccttttgtagtattaactcaaattgcaatattaatgattttccagtatgtgaatgcttggaaggtttcatgccaaaattt |
5827948 |
T |
|
| Q |
129 |
caaccaaaatggaagtcattgaattggtctggtgggtgcctcaggagaacaaaattgaattgtcacactggggatggctttctgaa |
214 |
Q |
| |
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||| ||||||||||||| | |||||||||||||||||| | |||||||||||||||||||| | || ||| ||||||||| |||| |
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| T |
5827949 |
caaacaaaatggaagtcgtcgaattggtctggtgggtgtcggaggagaacaaaattgaattgcctcaatggtgatggctttttgaa |
5828034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 166
Target Start/End: Complemental strand, 5455407 - 5455264
Alignment:
| Q |
23 |
tcctgcagaccagtgtgatgattatgccttgtgcggtatcaactctaactgcaatattaataactttccaatatgtgaatgcttggaaggtttcatgcca |
122 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
5455407 |
tcctgcagaccagtgtgatgcttatgccttttgtggtatcaattctaactgcaatattaatgactttccaatatgtgaatgtttggaaggtttcatgcca |
5455308 |
T |
|
| Q |
123 |
aaatttcaaccaaaatggaagtcattgaattggtctggtgggtg |
166 |
Q |
| |
|
|||||||||||||| ||| |||||| |||||||||||||||| |
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|
| T |
5455307 |
aaatttcaaccaaagtgggagtcatcagattggtctggtgggtg |
5455264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 29 - 214
Target Start/End: Complemental strand, 20344021 - 20343836
Alignment:
| Q |
29 |
agaccagtgtgatgattatgccttgtgcggtatcaactctaactgcaatattaataactttccaatatgtgaatgcttggaaggtttcatgccaaaattt |
128 |
Q |
| |
|
|||||||||||| || ||||||| || || |||||||||||||||||||||||| | | |||||| |||||||||||||||||||||| |||||||||| |
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| T |
20344021 |
agaccagtgtgaagagtatgcctgttgtgggatcaactctaactgcaatattaatgaatctccaatttgtgaatgcttggaaggtttcacgccaaaattt |
20343922 |
T |
|
| Q |
129 |
caaccaaaatggaagtcattgaattggtctggtgggtgcctcaggagaacaaaattgaattgtcacactggggatggctttctgaa |
214 |
Q |
| |
|
||| ||||||||||||||| | |||||||||| ||||| || |||||||||||||||||||||| || ||| ||||| ||| |||| |
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|
| T |
20343921 |
caatcaaaatggaagtcatcggattggtctggcgggtgtctgaggagaacaaaattgaattgtctcaatggagatggatttttgaa |
20343836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 27 - 214
Target Start/End: Original strand, 5802179 - 5802366
Alignment:
| Q |
27 |
gcagaccagtgtgatgattatgccttgtgcggtatcaactctaactgcaatattaataactttccaatatgtgaatgcttggaaggtttcatgccaaaat |
126 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||| || |||||||||||| | |||||| ||||||||||| |||||||||||||||| |||| |
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|
| T |
5802179 |
gcagaccagtgtgatgattattccttatgcggtatcaactcaaattgcaatattaatgaatttccagtatgtgaatgcgtggaaggtttcatgccgaaat |
5802278 |
T |
|
| Q |
127 |
ttcaaccaaaatggaagtcattgaattggtctggtgggtgcctcaggagaacaaaattgaattgtcacactggggatggctttctgaa |
214 |
Q |
| |
|
|| ||| | | ||| |||||| |||||||||||||||| || |||||||||||||||||||||| || ||| ||||||||| |||| |
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|
| T |
5802279 |
ttgaactacagtgggagtcatcagattggtctggtgggtgtctgaggagaacaaaattgaattgtctcaatggtgatggctttttgaa |
5802366 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 167
Target Start/End: Complemental strand, 5503397 - 5503253
Alignment:
| Q |
23 |
tcctgcagaccagtgtgatgattatgccttgtgcggtatcaactctaactgcaatattaataactttccaatatgtgaatgcttggaaggtttcatgcca |
122 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| |||| ||| |||||||||||| | ||| ||||||||||||||||||||| ||||||||| ||||| |
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| T |
5503397 |
tcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttccaatatgtgaatgcttagaaggtttcgtgcca |
5503298 |
T |
|
| Q |
123 |
aaatttcaaccaaaatggaagtcattgaattggtctggtgggtgc |
167 |
Q |
| |
|
|||| ||||||| | ||| |||||| |||||||||||||||||| |
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|
| T |
5503297 |
aaatctcaaccagagtgggagtcatcaaattggtctggtgggtgc |
5503253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 5446845 - 5446676
Alignment:
| Q |
23 |
tcctgcagaccagtgtgatgattatgccttgtgcggtatcaactctaactgcaatattaataactttccaatatgtgaatgcttggaaggtttcatgcca |
122 |
Q |
| |
|
|||||||||||||||||||| |||| |||| || |||||||| |||||||||||||| ||| ||||||||||||||| ||| ||||||||||||| |||| |
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|
| T |
5446845 |
tcctgcagaccagtgtgatgcttataccttttgtggtatcaattctaactgcaatatgaatgactttccaatatgtgtatgtttggaaggtttcaggcca |
5446746 |
T |
|
| Q |
123 |
aaatttcaaccaaaatggaagtcattgaattggtctggtgggtgcctcaggagaacaaaattgaattgtc |
192 |
Q |
| |
|
|||||||||| || ||| || ||| ||||||||||||||||| | |||| |||| | || ||||||| |
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|
| T |
5446745 |
aaatttcaactgaagtgggaggcatcagattggtctggtgggtgcgtaaggaaaacacatttaaattgtc |
5446676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 163
Target Start/End: Complemental strand, 5490584 - 5490444
Alignment:
| Q |
23 |
tcctgcagaccagtgtgatgattatgccttgtgcggtatcaactctaactgcaatattaataactttccaatatgtgaatgcttggaaggtttcatgcca |
122 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| |||| ||| |||||||||||| | ||| ||||||||||||||||||||| ||||||||||||||| |
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|
| T |
5490584 |
tcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttccaatatgtgaatgcttagaaggtttcatgcca |
5490485 |
T |
|
| Q |
123 |
aaatttcaaccaaaatggaagtcattgaattggtctggtgg |
163 |
Q |
| |
|
|||||||||| | | ||| | |||| |||||||||||||| |
|
|
| T |
5490484 |
aaatttcaactagagtgggattcatcaaattggtctggtgg |
5490444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 5485163 - 5485062
Alignment:
| Q |
23 |
tcctgcagaccagtgtgatgattatgccttgtgcggtatcaactctaactgcaatattaataactttccaatatgtgaatgcttggaaggtttcatgcca |
122 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| |||||||| |||||||||||| | | |||||||||||||||||||||||||||||||||| || |
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|
| T |
5485163 |
tcctgcagaccagtgtgatgcttatgacttgtgtggtatcaattctaactgcaatggcgaaagctttccaatatgtgaatgcttggaaggtttcatgtca |
5485064 |
T |
|
| Q |
123 |
aa |
124 |
Q |
| |
|
|| |
|
|
| T |
5485063 |
aa |
5485062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 5526237 - 5526126
Alignment:
| Q |
23 |
tcctgcagaccagtgtgatgattatgccttgtgcggtatcaactctaactgcaatattaataactttccaatatgtgaatgcttggaaggtttcatgcca |
122 |
Q |
| |
|
||||| ||||||||||||| ||||| | || |||||||| ||||| |||||| || ||| ||||||||||||| ||||||||||||||||||||||| |
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|
| T |
5526237 |
tcctgtagaccagtgtgatccttatgacacttgtggtatcaattctaattgcaatgttgatatctttccaatatgtaaatgcttggaaggtttcatgcca |
5526138 |
T |
|
| Q |
123 |
aaatttcaacca |
134 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5526137 |
aaatttcaacca |
5526126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 25808967 - 25809136
Alignment:
| Q |
23 |
tcctgcagaccagtgtgatgattatgccttgtgcggtatcaactctaactgcaatattaataactttccaatatgtgaatgcttggaaggtttcatgcca |
122 |
Q |
| |
|
|||||||||||||||||||| |||| |||| || |||||||| |||||||||||||| ||| ||||||||||||||| ||| ||||||||||||| |||| |
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|
| T |
25808967 |
tcctgcagaccagtgtgatgcttataccttttgtggtatcaattctaactgcaatatgaatgactttccaatatgtgtatgtttggaaggtttcaggcca |
25809066 |
T |
|
| Q |
123 |
aaatttcaaccaaaatggaagtcattgaattggtctggtgggtgcctcaggagaacaaaattgaattgtc |
192 |
Q |
| |
|
|||||||||| || ||| || ||| ||||||||||||||||| | |||| |||| | || ||||||| |
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|
| T |
25809067 |
aaatttcaactgaagtgggaggcatcagattggtctggtgggtgcgtaaggaaaacacatttaaattgtc |
25809136 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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