View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9122_low_55 (Length: 224)
Name: NF9122_low_55
Description: NF9122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9122_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 28752824 - 28753020
Alignment:
| Q |
13 |
cagagagaatatcaagactacaatgcgcttcggtgaaatgagtttgaagattgttgttctgatcttcaacaacttggtttagttcttgcagttcattcac |
112 |
Q |
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| T |
28752824 |
cagagagattatcaagactacaatgcgcttcggtgaaatgagtttgaagattgttgttctgatcttcaacaacttggtttagttcttgcagttcattcac |
28752923 |
T |
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| Q |
113 |
catttcatccatttctctaagtttctcgttcaatttaactttgtcgttaaccaaactttccttttccgtttcaaggttgcgaaccagcgaatggagt |
209 |
Q |
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| T |
28752924 |
catttcgtccatttctctaagtttctcgttcaatttaactttgtcgttaaccaaactttccttttccgtttcaaggttgcgaaccagcgaatggagt |
28753020 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 13749285 - 13749339
Alignment:
| Q |
39 |
gcttcggtgaaatgagtttgaagattgttgttctgatcttcaacaacttggttta |
93 |
Q |
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| T |
13749285 |
gcttcggtgaaatgagtttggaggttgctattctgatcttcaacagtttggttta |
13749339 |
T |
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