View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9122_low_6 (Length: 510)
Name: NF9122_low_6
Description: NF9122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9122_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 101 - 504
Target Start/End: Complemental strand, 17783300 - 17782897
Alignment:
| Q |
101 |
tagcaaatagtaaattagataaaaatccagttactttatttagcagcataaggagaataaagtattcatattcagtgcttctaaattcatgttccaataa |
200 |
Q |
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| T |
17783300 |
tagcaaatagtaaattacataaaaatccagttactttatttagcagcataaggagaataaagtattaatattcagtgcttctaaattcatgttccaataa |
17783201 |
T |
|
| Q |
201 |
tgcttttcagtttggcaaccaacttctcatgaggaggaagtgtctccttcaccaggggatgttccttcaagttattcacccacatgaaaaatttcggcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
17783200 |
tgcttttcagtttggcaaccaacttctcatgaggaggaagtgtctccttcaccaggggatgttccttcaagttattcacccaaatgaaaaatttcggcat |
17783101 |
T |
|
| Q |
301 |
cttttcgggtgtgaagacctctatctcacaggactcctgaaatgcttcgtaggtgcaagaagtcgcagctaccacaatgtcgaggagtcctagtgtttcg |
400 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17783100 |
cttttcgggtgtgaagacctctatctcacaggcctcctgaaatgcttcgtaggtgcaagaagtcgcagctaccacaatgtcgaggagtcctagtgtttcg |
17783001 |
T |
|
| Q |
401 |
ccattgaagaagtggaattgctcattaaaaccttccttgaccccttcttcaaacaccacaagtatctcttccatctcttctgcagctttctttctctctg |
500 |
Q |
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|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17783000 |
ccgttgaagaagtggaatttctcattaaaaccttccttgaccccttcttcaaacaccacaagtatctcttccatctcttctgcagctttctttctctctt |
17782901 |
T |
|
| Q |
501 |
ctcc |
504 |
Q |
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|||| |
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| T |
17782900 |
ctcc |
17782897 |
T |
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