View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9122_low_60 (Length: 219)

Name: NF9122_low_60
Description: NF9122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9122_low_60
NF9122_low_60
[»] chr7 (9 HSPs)
chr7 (15-202)||(39567508-39567695)
chr7 (15-202)||(39360720-39360907)
chr7 (15-202)||(39346169-39346356)
chr7 (15-202)||(39334911-39335098)
chr7 (15-202)||(39550715-39550902)
chr7 (15-198)||(39541457-39541640)
chr7 (15-188)||(39577315-39577488)
chr7 (15-188)||(39591792-39591965)
chr7 (17-182)||(39624279-39624444)
[»] chr4 (3 HSPs)
chr4 (23-202)||(2874189-2874368)
chr4 (23-202)||(2900602-2900781)
chr4 (123-179)||(2884206-2884262)
[»] chr3 (1 HSPs)
chr3 (17-177)||(49770236-49770396)
[»] chr2 (1 HSPs)
chr2 (26-177)||(44213302-44213453)
[»] chr1 (1 HSPs)
chr1 (128-177)||(2163906-2163955)
[»] chr8 (1 HSPs)
chr8 (122-180)||(4497929-4497987)


Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 39567508 - 39567695
Alignment:
Q  15 cagagagtagaataacgtcgtcaaaaagattgtaagtctctggtggtggctgcaggagtgagataatggcggttccattgagaatgtggacatcttgcct 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39567508 cagagagtagaataacgtcgtcaaaaagattgtaagtctctggtggtggctgcaggagtgagataatggcggttccattgagaatgtggacatcttgcct 39567607  T
Q  115 cattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaatagagctttagtgggtccaaccaac 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39567608 cattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaatagagctttagtgggtccaaccaac 39567695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 39360907 - 39360720
Alignment:
Q  15 cagagagtagaataacgtcgtcaaaaagattgtaagtctctggtggtggctgcaggagtgagataatggcggttccattgagaatgtggacatcttgcct 114  Q
    |||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||| |   ||||||| ||||||||||| |||| ||||||    
T  39360907 cagagagtagtataatgtcgtcaaaaagattgtaagtctctggtggaggctgcaggagtgagatcaccacggttcctttgagaatgtgaacatattgcct 39360808  T
Q  115 cattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaatagagctttagtgggtccaaccaac 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||    
T  39360807 cattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaataaagctttagtcggtccaaccaac 39360720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 39346356 - 39346169
Alignment:
Q  15 cagagagtagaataacgtcgtcaaaaagattgtaagtctctggtggtggctgcaggagtgagataatggcggttccattgagaatgtggacatcttgcct 114  Q
    ||||||||||||||| |||||| || ||||||||||| |||||||| ||||||||||||||||| |  |||||||| |||||||||||||||| |||| |    
T  39346356 cagagagtagaataatgtcgtcgaatagattgtaagtttctggtggcggctgcaggagtgagatcaccgcggttcctttgagaatgtggacatattgctt 39346257  T
Q  115 cattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaatagagctttagtgggtccaaccaac 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||    
T  39346256 cattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaataaagctttagttggtccaaccaac 39346169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 39335098 - 39334911
Alignment:
Q  15 cagagagtagaataacgtcgtcaaaaagattgtaagtctctggtggtggctgcaggagtgagataatggcggttccattgagaatgtggacatcttgcct 114  Q
    ||||||||||||||| |  |||||| ||||||||||| |||||||| ||||||||||||||||| |  |||||||| |||||||||||||||| |||| |    
T  39335098 cagagagtagaataatgctgtcaaatagattgtaagtttctggtggcggctgcaggagtgagatcaccgcggttcctttgagaatgtggacatattgctt 39334999  T
Q  115 cattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaatagagctttagtgggtccaaccaac 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||    
T  39334998 cattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaataaagctttagttggtccaaccaac 39334911  T

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Target: chr7; HSP #5
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 39550715 - 39550902
Alignment:
Q  15 cagagagtagaataacgtcgtcaaaaagattgtaagtctctggtggtggctgcaggagtgagataatggcggttccattgagaatgtggacatcttgcct 114  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| |  || ||||| |||||||||||||||  |||| |    
T  39550715 cagagagtagaataatgtcgtcaaaaagattgtaagtctctggtggtggctgaaggagcgagatgaccgcagttcctttgagaatgtggacaaattgctt 39550814  T
Q  115 cattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaatagagctttagtgggtccaaccaac 202  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |  ||||||||||||    
T  39550815 cattgaattcacaatctgaaaagttgtcgagctatccaaaccagtagatatttcatccatgaatagagctttcgccggtccaaccaac 39550902  T

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Target: chr7; HSP #6
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 39541457 - 39541640
Alignment:
Q  15 cagagagtagaataacgtcgtcaaaaagattgtaagtctctggtggtggctgcaggagtgagataatggcggttccattgagaatgtggacatcttgcct 114  Q
    |||||||||||||||  || |||||||||||| | ||||||||||||||||| ||||||||||| |  || ||||| ||||||||||| ||||  ||| |    
T  39541457 cagagagtagaataatttcatcaaaaagattgaatgtctctggtggtggctgaaggagtgagatgacagccgttcctttgagaatgtgtacatactgctt 39541556  T
Q  115 cattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaatagagctttagtgggtccaac 198  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  39541557 tattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaatagagctttagtcggtccaac 39541640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 39577315 - 39577488
Alignment:
Q  15 cagagagtagaataacgtcgtcaaaaagattgtaagtctctggtggtggctgcaggagtgagataatggcggttccattgagaatgtggacatcttgcct 114  Q
    ||||||||||||||| ||||||||||||||  |||||||||||||||||||||| ||||||||| |  || ||||||||||| | ||||||||  ||| |    
T  39577315 cagagagtagaataatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcaggtggacatactgctt 39577414  T
Q  115 cattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaatagagctttag 188  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||    
T  39577415 cattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaaaagagccttag 39577488  T

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Target: chr7; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 39591792 - 39591965
Alignment:
Q  15 cagagagtagaataacgtcgtcaaaaagattgtaagtctctggtggtggctgcaggagtgagataatggcggttccattgagaatgtggacatcttgcct 114  Q
    ||||||||||||||| |||||| ||||||| ||||||||| ||||||||||||| ||||||||| |  || ||||| |||||||  |||||||  ||| |    
T  39591792 cagagagtagaataatgtcgtcgaaaagatagtaagtctcaggtggtggctgcaagagtgagattacagcagttcctttgagaagatggacataatgcat 39591891  T
Q  115 cattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaatagagctttag 188  Q
    || |||  |||||| |||||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||    
T  39591892 cactgatctcacaacttgaaaagttgtcgagctatccaaaccagtagatatttcatccatgaaaagagccttag 39591965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 39624279 - 39624444
Alignment:
Q  17 gagagtagaataacgtcgtcaaaaagattgtaagtctctggtggtggctgcaggagtgagataatggcggttccattgagaatgtggacatcttgcctca 116  Q
    ||||||| ||||| ||| ||||||||||||||||||||| ||| ||||||  | |||||||| |  || ||||  ||||||| || ||||  |||  |||    
T  39624279 gagagtaaaataatgtcatcaaaaagattgtaagtctctagtgatggctgttgtagtgagatcacagcagttcttttgagaaggtagacaaattgtttca 39624378  T
Q  117 ttgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaatagag 182  Q
      || |||||||||||||| | |||||||  |||||||||| ||||||| || |||| ||||||||    
T  39624379 gcgatttcacaatttgaaaggctgttgagtcatccaaaccaatagatatatcatccacgaatagag 39624444  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 2874368 - 2874189
Alignment:
Q  23 agaataacgtcgtcaaaaagattgtaagtctctggtggtggctgcaggagtgagataatggcggttccattgagaatgtggacatcttgcctcattgaat 122  Q
    ||||||| ||| |||||||| |  ||||||||||||| |||||| || | ||||||||  || |||||||  ||||| |  |||| |||||| |  || |    
T  2874368 agaataatgtcatcaaaaagttcataagtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatt 2874269  T
Q  123 tcacaatttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaatagagctttagtgggtccaaccaac 202  Q
    ||||||||||||||| ||| || ||||| || ||||| |||||||| |||||||||||| |||| |  ||||||||||||    
T  2874268 tcacaatttgaaaagctgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaac 2874189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 2900602 - 2900781
Alignment:
Q  23 agaataacgtcgtcaaaaagattgtaagtctctggtggtggctgcaggagtgagataatggcggttccattgagaatgtggacatcttgcctcattgaat 122  Q
    ||||||| ||| |||||||| |  ||||||||||||| ||| || || |  |||||||  || |||||||| ||||| || |||| |||||| |  || |    
T  2900602 agaataatgtcatcaaaaagttcataagtctctggtgctggttgaagcaaagagataactgcagttccattaagaatatgaacatattgcctaagagatt 2900701  T
Q  123 tcacaatttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaatagagctttagtgggtccaaccaac 202  Q
    |||||||||| |||||||| || || ||||| |||||||||||||| |||||||||| ||| || |  ||||||||||||    
T  2900702 tcacaatttggaaagttgtggaactgtccaagccagtagatatttcatccatgaataaagcatttgctggtccaaccaac 2900781  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 2884262 - 2884206
Alignment:
Q  123 tcacaatttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaata 179  Q
    |||||||||| |||||||| || || |||||||||||||||||||| ||||||||||    
T  2884262 tcacaatttggaaagttgtggaactgtccaaaccagtagatatttcatccatgaata 2884206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 49770396 - 49770236
Alignment:
Q  17 gagagtagaataacgtcgtcaaaaagattgtaagtctctggtggtggctgcaggagtgagataatggcggttccattgagaatgtggacatcttgcctca 116  Q
    ||||| ||||| | |||||| || | || |||||| || |||| |||||| || || |||||||  || |||||||| ||||||||||    |||||| |    
T  49770396 gagaggagaattatgtcgtcgaataaatcgtaagtttcaggtgttggctgtagaagagagataagagctgttccattcagaatgtggatggattgcctta 49770297  T
Q  117 ttgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaa 177  Q
     |||||| |  |||||||| |||||||| || ||||||||||| |||||||||||||||||    
T  49770296 gtgaattaatcatttgaaatgttgttgaactgtccaaaccagtcgatatttcgtccatgaa 49770236  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 177
Target Start/End: Original strand, 44213302 - 44213453
Alignment:
Q  26 ataacgtcgtcaaaaagattgtaagtctctggtggtggctgcaggagtgagataatggcggttccattgagaatgtggacatcttgcctcattgaattca 125  Q
    |||| ||| ||||||||||  |||||||| |||| |||||| || ||||| ||||  || || ||||| | |||||| |||| ||||||||  ||  |||    
T  44213302 ataatgtcatcaaaaagatcataagtctcaggtgctggctggagcagtgatataactgcagtgccattcataatgtgaacatattgcctcagagagctca 44213401  T
Q  126 caatttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaa 177  Q
    |||||||||||||||| || || ||||  |||||||| ||||| ||||||||    
T  44213402 caatttgaaaagttgtggaactgtccagtccagtagaaatttcatccatgaa 44213453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 2163906 - 2163955
Alignment:
Q  128 atttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaa 177  Q
    ||||||||||||||||| || ||||||||||| |||||||||||||||||    
T  2163906 atttgaaaagttgttgaactgtccaaaccagttgatatttcgtccatgaa 2163955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 4497987 - 4497929
Alignment:
Q  122 ttcacaatttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaatag 180  Q
    |||||||||||||| |||||||| ||||| | |||||| |||||||| |||||||||||    
T  4497987 ttcacaatttgaaatgttgttgaactatcaagaccagttgatatttcatccatgaatag 4497929  T

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