View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9122_low_8 (Length: 498)
Name: NF9122_low_8
Description: NF9122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9122_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 19 - 478
Target Start/End: Complemental strand, 45467495 - 45467055
Alignment:
| Q |
19 |
cgaatctcatcaatcctctctttctctttactatacttcatcttcagaggttgaagcttgtctctcaagtcatcaagttctctccgtacctacgaagaac |
118 |
Q |
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| T |
45467495 |
cgaatctcatcaatcctctctttctctttactatacttcatcttcagaggttgaagcttgtctctcaagtcatcaagttctctccgtacctgtgaagaac |
45467396 |
T |
|
| Q |
119 |
atcaactatcagaatcattgaagtaccgtaaataaacaatataaaatgaaaactgatacgcaatttgaaccattatcccacatttgcagcaacaccacaa |
218 |
Q |
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| T |
45467395 |
atcaactatcagaatcattgaagtaccgtaaataaacaatataaaatgaaaactgatacgcaatttgaaccattatcccacatttgcagcaacaccacaa |
45467296 |
T |
|
| Q |
219 |
tatagttatgtttttagtattacaaaaatgaagttcatttggaacatatgaagttaaattaaactaaactaatgtacatctgctaaaatctactatgaat |
318 |
Q |
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| T |
45467295 |
tatagttatgtttttagtattacaaaaatgaagttcatttagaacatatgaagttaaattaaactaaa--------------ctaaaatctactatgaat |
45467210 |
T |
|
| Q |
319 |
aaatatatcttcattgttaaatatatcatcaaaattaatgctatcatggcatatttgaattcagaaatcattgtaatgattaaaagaaaaacttaacatc |
418 |
Q |
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| T |
45467209 |
aaatatatcttcattgttaaatatatcatcaaaattaatgctatcatggcatatttgaattcagaaatcat-----tgattaaaagaaaaacttaacatc |
45467115 |
T |
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| Q |
419 |
catacttacatctacaagacgggctttgctagctttgtccttctctttctctagagcatg |
478 |
Q |
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| T |
45467114 |
catacttacatctacaagacgggctttgctagctttgtccttctctttctctagagcatg |
45467055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 10045642 - 10045552
Alignment:
| Q |
19 |
cgaatctcatcaatcctctctttctctttactatacttcatcttcagaggttgaagcttgtctctcaagtcatcaagttctctccgtacct |
109 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| || | ||||||||| |||| |||| |
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| T |
10045642 |
cgaatctcatcaatcctctctttctctttgatatacttcatcttcagaggctgaagcttgtctcttaaattgtcaagttctttccgcacct |
10045552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 400 - 479
Target Start/End: Complemental strand, 10045285 - 10045206
Alignment:
| Q |
400 |
aaaagaaaaacttaacatccatacttacatctacaagacgggctttgctagctttgtccttctctttctctagagcatga |
479 |
Q |
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| T |
10045285 |
aaaagaaaaactcaacatcaacacttacatcgacaagacgagctttgctagctttgtcctcctctttctccaaagcatga |
10045206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 38707467 - 38707405
Alignment:
| Q |
21 |
aatctcatcaatcctctctttctctttactatacttcatcttcagaggttgaagcttgtctct |
83 |
Q |
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| T |
38707467 |
aatctcatcaatcctctctttctctttgttatactgcatcttcagatgtcgaagcttgtctct |
38707405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 42450381 - 42450420
Alignment:
| Q |
20 |
gaatctcatcaatcctctctttctctttactatacttcat |
59 |
Q |
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| T |
42450381 |
gaatctcatcaatcctcactttctcttttctatacttcat |
42450420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 457
Target Start/End: Original strand, 743313 - 743365
Alignment:
| Q |
405 |
aaaaacttaacatccatacttacatctacaagacgggctttgctagctttgtc |
457 |
Q |
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||||||| || |||||||||||||||| ||||||| |||||||||| ||||| |
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| T |
743313 |
aaaaactcaaaatccatacttacatctgcaagacgaactttgctagcgttgtc |
743365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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