View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9123_low_11 (Length: 337)
Name: NF9123_low_11
Description: NF9123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9123_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 329
Target Start/End: Complemental strand, 17030224 - 17029915
Alignment:
| Q |
20 |
aactgtggacaattatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17030224 |
aactgtggacaattatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaa |
17030125 |
T |
|
| Q |
120 |
agtgttgcagccttggtgtagacaatcctccttttggacatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17030124 |
agtgttgcagccttggtgtagacaatcctccttttggaaatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttc |
17030025 |
T |
|
| Q |
220 |
ctgtgaaatcatttcaaaactactacacttataaaggtcgagaaaatcaagatttgggaacagattcagcgggaatgttgttagagagtcgtagctactg |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17030024 |
ctgtgaaatcatttcaaaactactacacttataaaggtcgagaaaatcaagatttgggaacagattcagcgggaatgttgttagagagtcgcagctactg |
17029925 |
T |
|
| Q |
320 |
gtgatgtcca |
329 |
Q |
| |
|
|||||||||| |
|
|
| T |
17029924 |
gtgatgtcca |
17029915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 329
Target Start/End: Complemental strand, 17048562 - 17048253
Alignment:
| Q |
20 |
aactgtggacaattatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17048562 |
aactgtggacaattatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaa |
17048463 |
T |
|
| Q |
120 |
agtgttgcagccttggtgtagacaatcctccttttggacatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17048462 |
agtgttgcagccttggtgtagacaatcctccttttggaaatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttc |
17048363 |
T |
|
| Q |
220 |
ctgtgaaatcatttcaaaactactacacttataaaggtcgagaaaatcaagatttgggaacagattcagcgggaatgttgttagagagtcgtagctactg |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17048362 |
ctgtgaaatcatttcaaaactactacacttataaaggtcgagaaaatcaagatttgggaacagattcagcgggaatgttgttagagagtcgcagctactg |
17048263 |
T |
|
| Q |
320 |
gtgatgtcca |
329 |
Q |
| |
|
|||||||||| |
|
|
| T |
17048262 |
gtgatgtcca |
17048253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 329
Target Start/End: Complemental strand, 16978352 - 16978043
Alignment:
| Q |
20 |
aactgtggacaattatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaa |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16978352 |
aactgtggacaatcatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaa |
16978253 |
T |
|
| Q |
120 |
agtgttgcagccttggtgtagacaatcctccttttggacatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16978252 |
agtgttgcagccttggtgtagacaatcctccttttggaaatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttc |
16978153 |
T |
|
| Q |
220 |
ctgtgaaatcatttcaaaactactacacttataaaggtcgagaaaatcaagatttgggaacagattcagcgggaatgttgttagagagtcgtagctactg |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16978152 |
ctgtgaaatcatttcaaaactactacacttataaaggtcgagaaaatcaagatttgggaacagattcagcgggaatgttgttagagagtcgcagctactg |
16978053 |
T |
|
| Q |
320 |
gtgatgtcca |
329 |
Q |
| |
|
|||||||||| |
|
|
| T |
16978052 |
gtgatgtcca |
16978043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 23 - 309
Target Start/End: Complemental strand, 17109681 - 17109395
Alignment:
| Q |
23 |
tgtggacaattatctatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagt |
122 |
Q |
| |
|
|||||||||| || |||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||| | ||| ||||| |||| || ||| | |
|
|
| T |
17109681 |
tgtggacaatcatttatagacagcttatagagagatggaaggaggatatgcatgcattcaggaagtgattttaactcctctaattttgaaagataaaact |
17109582 |
T |
|
| Q |
123 |
gttgcagccttggtgtagacaatcctccttttggacatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctg |
222 |
Q |
| |
|
| || ||||| |||| |||||||||||| |||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
17109581 |
gctgaagcctgggtgcagacaatcctccatttggaaatgatgcaaatttaggacactcttcaattaagagagatgtgagtttaagatgttcattttcctg |
17109482 |
T |
|
| Q |
223 |
tgaaatcatttcaaaactactacacttataaaggtcgagaaaatcaagatttgggaacagattcagcgggaatgttgttagagagtc |
309 |
Q |
| |
|
|||||||||||| ||| || |||||||||||| || ||| |||||||| |||||||| || || ||||| || ||||||||||| |
|
|
| T |
17109481 |
tgaaatcatttcgaaattaatacacttataaacatcaagagtgtcaagattcgggaacagtttgagagggaaggtcgttagagagtc |
17109395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 274
Target Start/End: Complemental strand, 17024547 - 17024305
Alignment:
| Q |
37 |
tatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgatttta-----aattctccaatttggaaatatcaaagtgttgcagcc |
131 |
Q |
| |
|
||||||||| |||| ||||||||||| || || |||||||||||||||||||||||||| |||||||| ||||| |||||| ||||||||| | | |
|
|
| T |
17024547 |
tatagataggttatgaagagatggaaagaagatatgcatgcatttaggaagtgattttaaattgaattctcctatttgaaaatattaaagtgttgtaaac |
17024448 |
T |
|
| Q |
132 |
ttggtgtagacaatcctccttttggacatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatcat |
231 |
Q |
| |
|
|||| | |||| ||||| | || || ||| | |||| | |||||||| | |||||||||| || | ||| ||||||| |||||||||| ||| |||| |
|
|
| T |
17024447 |
ttggagcagacgatccttccttgggtaatgttccaaaataaggacacttcctaattgagagatatttaagtataagatgttcattttcctaggaattcat |
17024348 |
T |
|
| Q |
232 |
ttcaaaactactacacttataaaggtcgagaaaatcaagattt |
274 |
Q |
| |
|
||||||| || || ||||||||| | ||||| ||||||||||| |
|
|
| T |
17024347 |
ttcaaaattattaaacttataaacgccgagataatcaagattt |
17024305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 37 - 274
Target Start/End: Complemental strand, 17089819 - 17089577
Alignment:
| Q |
37 |
tatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgatttta-----aattctccaatttggaaatatcaaagtgttgcagcc |
131 |
Q |
| |
|
||||||||| |||| ||||||||||| || || |||||||||||||||||||||||||| |||||||| ||||| |||||| ||||||||| | |
|
|
| T |
17089819 |
tatagataggttatgaagagatggaaagaagatatgcatgcatttaggaagtgattttaaattgaattctcctatttgaaaatattaaagtgttgtaaat |
17089720 |
T |
|
| Q |
132 |
ttggtgtagacaatcctccttttggacatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatcat |
231 |
Q |
| |
|
|||| | |||| ||||| | || || ||| | |||| | |||||||| | |||||||||| || | ||| ||||||| |||||||||| ||| |||| |
|
|
| T |
17089719 |
ttggagcagacgatccttccttgggtaatgttccaaaataaggacacttcctaattgagagatatttaagtataagatgttcattttcctaggaattcat |
17089620 |
T |
|
| Q |
232 |
ttcaaaactactacacttataaaggtcgagaaaatcaagattt |
274 |
Q |
| |
|
||||||| || || ||||||||| | ||||| ||||||||||| |
|
|
| T |
17089619 |
ttcaaaattattaaacttataaacgccgagataatcaagattt |
17089577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 269
Target Start/End: Complemental strand, 17035309 - 17035072
Alignment:
| Q |
37 |
tatagatagcttataaagagatggaaggaggacatgcatgcatttaggaagtgatttta-----aattctccaatttggaaatatcaaagtgttgcagcc |
131 |
Q |
| |
|
||||||||| |||| ||||||||||| || || |||||||||||||||||||||||||| |||||||| ||||| |||||| ||||||||| | | |
|
|
| T |
17035309 |
tatagataggttatgaagagatggaaagaagatatgcatgcatttaggaagtgattttaaattgaattctcctatttgaaaatattaaagtgttgtaaac |
17035210 |
T |
|
| Q |
132 |
ttggtgtagacaatcctccttttggacatgatgcaaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatcat |
231 |
Q |
| |
|
|||| | |||| ||||| | || || ||| | |||| | |||||||| | |||||||||| || | ||| ||||||| |||||||||| ||| |||| |
|
|
| T |
17035209 |
ttggagcagacgatccttccttgggtaatgttccaaaataaggacacttcctaattgagagatatttaagtataagatgttcattttcctaggaattcat |
17035110 |
T |
|
| Q |
232 |
ttcaaaactactacacttataaaggtcgagaaaatcaa |
269 |
Q |
| |
|
||||||| || || ||||||||| | ||||| |||||| |
|
|
| T |
17035109 |
ttcaaaattattaaacttataaacgccgagataatcaa |
17035072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University