View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9123_low_3 (Length: 709)
Name: NF9123_low_3
Description: NF9123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9123_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 18 - 543
Target Start/End: Original strand, 11624366 - 11624891
Alignment:
| Q |
18 |
caaggaacactagtcatacatggaacttgaggaatgaaaccattattttgctgtggcaatgattcttgtgtcatgtttttaccactttcctccatggatt |
117 |
Q |
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| T |
11624366 |
caaggaacactagtcatacatggaacttggggaatgaaaccattatttttctgtggcaatgattcttgtgtcatgtttttaccactttcctccatggatt |
11624465 |
T |
|
| Q |
118 |
ttgaaactgtaacagaagacgcactcgaaaaacgatcaccattatttcgagtgtcgttaagaacctttttctctgcaggattgagatcatttgacattga |
217 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11624466 |
ttgaaactgtaacagaagacgcacttgaaaaacgatcaccattatttcgagtgtcgttaagaacctttttctctgcaggattgagatcatttgacattga |
11624565 |
T |
|
| Q |
218 |
atcatagatatgtggatgatccaacccaaagttgagaactctaccattggttttcaaattttgaagatgatgagttccattaggtgaaataattcttgct |
317 |
Q |
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| T |
11624566 |
atcatagatatgtggatgatccaacccaaagttgagaactctaccattggttttcaaattttgaagatgatgagttccattaggagaaataattcttgct |
11624665 |
T |
|
| Q |
318 |
gcatcaagagcctcagagatggtgatgtggcgataatgtgacgaagagttgttcttattttttcttcttcctgcacccaccggaacatttctcatggttc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11624666 |
gcatcaagagcctcagagatggtgatgtggcgataatgcgacgaagagttgttcttattttttcttcttcctgcacccaccggaacatttctcatggttc |
11624765 |
T |
|
| Q |
418 |
cgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaactttgtgtccgcgctgttgca |
517 |
Q |
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| T |
11624766 |
cacctgcagtccaatatctttgacacgccttgcagaaatagcgcggctgattgacgttgtaattattgtagtaacagaactttgtgtccgcgctgttgca |
11624865 |
T |
|
| Q |
518 |
gcgtggacacaggagtaatttgtctg |
543 |
Q |
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|||||||||||||||||||||||||| |
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| T |
11624866 |
gcgtggacacaggagtaatttgtctg |
11624891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 616 - 704
Target Start/End: Original strand, 11624964 - 11625046
Alignment:
| Q |
616 |
aagtttcttcatctatggaaggtgtttttgggttctgaataccctccggtaatgttgctgctgaattgttgttgttcttgatctctgct |
704 |
Q |
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| T |
11624964 |
aagtttcttcatctatggaaggtgtttttgggtt------accctccggtaatgttgctgctgaattgttgttgttcttgatctctgct |
11625046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 399 - 506
Target Start/End: Complemental strand, 31771910 - 31771803
Alignment:
| Q |
399 |
ggaacatttctcatggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaact |
498 |
Q |
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| T |
31771910 |
ggaacatttctcattgttcctcctgcagtccaatatctttgacatttcttacaaaaatgacgaggctggttgacattgtaattgttgaagtaacaaaatt |
31771811 |
T |
|
| Q |
499 |
ttgtgtcc |
506 |
Q |
| |
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| |||||| |
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| T |
31771810 |
tggtgtcc |
31771803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 390 - 506
Target Start/End: Complemental strand, 2823737 - 2823621
Alignment:
| Q |
390 |
gcacccaccggaacatttctcatggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagt |
489 |
Q |
| |
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||||| ||||| || |||||||||||||| || |||||||||||||| || || |||||| |||| || || || ||||| ||||||||||| |||| |
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| T |
2823737 |
gcacctaccggtacgtttctcatggttccaccggcagtccaatatctctggcagttcttgcagaaatgacggggttggttgacattgtaattattatagt |
2823638 |
T |
|
| Q |
490 |
aacagaactttgtgtcc |
506 |
Q |
| |
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| |||||||| |||||| |
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| T |
2823637 |
agcagaacttcgtgtcc |
2823621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 412 - 526
Target Start/End: Complemental strand, 18193495 - 18193381
Alignment:
| Q |
412 |
tggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaactttgtgtccgcgct |
511 |
Q |
| |
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||||||| || |||||||||||||| ||||| ||||| || | || ||||| ||| |||||||||||||||||||||| || |||||||| |||| |
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| T |
18193495 |
tggttcctccggcagtccaatatctctgacagtttttgcagaagtgtcggggctggttggcgttgtaattattgtagtaacaaaattttgtgtctacgct |
18193396 |
T |
|
| Q |
512 |
gttgcagcgtggaca |
526 |
Q |
| |
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||||| | |||||| |
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| T |
18193395 |
tttgcatcttggaca |
18193381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 462 - 506
Target Start/End: Complemental strand, 18188204 - 18188160
Alignment:
| Q |
462 |
ggctgattgacgttgtaattattgtagtaacagaactttgtgtcc |
506 |
Q |
| |
|
||||| ||| |||||||||||||||||||||| || ||||||||| |
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| T |
18188204 |
ggctggttggcgttgtaattattgtagtaacaaaattttgtgtcc |
18188160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 402 - 506
Target Start/End: Complemental strand, 3775700 - 3775596
Alignment:
| Q |
402 |
acatttctcatggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaactttg |
501 |
Q |
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||||||||||||| ||| || |||||||| ||||| || || ||||||||||| ||| || || || || ||||| ||||||||||| ||||| || | |
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| T |
3775700 |
acatttctcatggctcccccggcagtccagtatctctggcatttcttgcaaaaatggcgaggttggttaacattgtagttattgtagtagcagaatttgg |
3775601 |
T |
|
| Q |
502 |
tgtcc |
506 |
Q |
| |
|
||||| |
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|
| T |
3775600 |
tgtcc |
3775596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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