View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9124_low_1 (Length: 1606)

Name: NF9124_low_1
Description: NF9124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9124_low_1
NF9124_low_1
[»] chr7 (33 HSPs)
chr7 (288-1175)||(45702846-45703739)
chr7 (1173-1453)||(45702530-45702810)
chr7 (18-256)||(45703740-45703977)
chr7 (1453-1523)||(20091196-20091266)
chr7 (1450-1523)||(25010542-25010615)
chr7 (1454-1523)||(29077335-29077404)
chr7 (1454-1523)||(48983756-48983825)
chr7 (1454-1522)||(23550988-23551056)
chr7 (1453-1523)||(10329326-10329396)
chr7 (1454-1523)||(12596207-12596276)
chr7 (1457-1520)||(8171460-8171523)
chr7 (1454-1521)||(18776683-18776750)
chr7 (1454-1523)||(24525599-24525668)
chr7 (1454-1522)||(26254110-26254178)
chr7 (1454-1523)||(47984885-47984954)
chr7 (1454-1522)||(28749827-28749895)
chr7 (1456-1523)||(8239802-8239869)
chr7 (1468-1523)||(40357311-40357366)
chr7 (1278-1336)||(25408400-25408458)
chr7 (1278-1347)||(3321914-3321983)
chr7 (1278-1347)||(7073037-7073106)
chr7 (1454-1523)||(19692210-19692279)
chr7 (1278-1336)||(25403643-25403701)
chr7 (1454-1523)||(38414793-38414862)
chr7 (1454-1520)||(10955605-10955671)
chr7 (1283-1383)||(21985950-21986050)
chr7 (1455-1523)||(33162257-33162325)
chr7 (272-315)||(4860908-4860951)
chr7 (272-315)||(18411834-18411877)
chr7 (1283-1362)||(24272856-24272935)
chr7 (132-190)||(16883228-16883286)
chr7 (272-314)||(21644214-21644256)
chr7 (132-190)||(24263051-24263109)
[»] chr8 (26 HSPs)
chr8 (1454-1523)||(42600898-42600967)
chr8 (1453-1523)||(10917506-10917576)
chr8 (1454-1523)||(23606548-23606617)
chr8 (1454-1523)||(23798179-23798248)
chr8 (1454-1523)||(37430076-37430145)
chr8 (1454-1522)||(2952137-2952205)
chr8 (1457-1523)||(13534609-13534675)
chr8 (1457-1523)||(13624149-13624215)
chr8 (1454-1523)||(20003728-20003797)
chr8 (1454-1523)||(41879295-41879364)
chr8 (1454-1523)||(45475932-45476001)
chr8 (1454-1522)||(3048435-3048503)
chr8 (1278-1347)||(21040416-21040485)
chr8 (1457-1522)||(30883447-30883512)
chr8 (1278-1347)||(4814352-4814421)
chr8 (1278-1347)||(28893750-28893819)
chr8 (1468-1522)||(5860674-5860728)
chr8 (1278-1347)||(16754386-16754455)
chr8 (1278-1347)||(28330881-28330950)
chr8 (1278-1347)||(25682893-25682962)
chr8 (1283-1383)||(26401306-26401406)
chr8 (132-190)||(10685992-10686050)
chr8 (272-314)||(26299550-26299592)
chr8 (132-190)||(35743690-35743748)
chr8 (1290-1336)||(40827259-40827305)
chr8 (1454-1499)||(33963268-33963313)
[»] chr4 (40 HSPs)
chr4 (1454-1523)||(54083160-54083229)
chr4 (1454-1523)||(34027699-34027768)
chr4 (1453-1523)||(32915506-32915576)
chr4 (1454-1523)||(16882313-16882382)
chr4 (1454-1523)||(32128705-32128774)
chr4 (1454-1523)||(37777140-37777209)
chr4 (1454-1522)||(55255379-55255447)
chr4 (1460-1523)||(38352189-38352252)
chr4 (1453-1523)||(40089645-40089715)
chr4 (1453-1523)||(54780899-54780969)
chr4 (1454-1522)||(2790659-2790727)
chr4 (1465-1523)||(43455460-43455518)
chr4 (1458-1523)||(1105652-1105717)
chr4 (1454-1523)||(24969717-24969786)
chr4 (1453-1521)||(10428115-10428183)
chr4 (1458-1521)||(47129109-47129172)
chr4 (1453-1523)||(16845142-16845211)
chr4 (1454-1523)||(17679520-17679589)
chr4 (1454-1523)||(19498622-19498691)
chr4 (1454-1522)||(34768492-34768560)
chr4 (1454-1517)||(5128758-5128821)
chr4 (1468-1522)||(35465227-35465281)
chr4 (1454-1523)||(10979023-10979092)
chr4 (1454-1523)||(16922245-16922314)
chr4 (1454-1514)||(48209376-48209436)
chr4 (1225-1347)||(15315250-15315372)
chr4 (1470-1521)||(23508443-23508494)
chr4 (1278-1347)||(4568329-4568398)
chr4 (1278-1347)||(16637147-16637216)
chr4 (1468-1521)||(38209522-38209575)
chr4 (1470-1522)||(2975358-2975410)
chr4 (1454-1509)||(13460305-13460360)
chr4 (1453-1523)||(37514781-37514849)
chr4 (1470-1523)||(51964831-51964884)
chr4 (1283-1383)||(3791089-3791189)
chr4 (1454-1514)||(9578575-9578635)
chr4 (753-825)||(15314749-15314821)
chr4 (1457-1523)||(35779248-35779314)
chr4 (1450-1488)||(45560071-45560109)
chr4 (265-315)||(47745865-47745914)
[»] chr2 (30 HSPs)
chr2 (1454-1523)||(27506659-27506728)
chr2 (1453-1523)||(26716244-26716314)
chr2 (1454-1523)||(24410554-24410623)
chr2 (1454-1522)||(4506010-4506078)
chr2 (1454-1522)||(8906996-8907064)
chr2 (1450-1521)||(12337361-12337432)
chr2 (1453-1522)||(3155333-3155402)
chr2 (1454-1523)||(29939781-29939850)
chr2 (1457-1521)||(6965122-6965186)
chr2 (1458-1522)||(40636253-40636317)
chr2 (1457-1523)||(10762488-10762554)
chr2 (1454-1521)||(3953121-3953188)
chr2 (1454-1523)||(8327732-8327801)
chr2 (1454-1523)||(9046144-9046213)
chr2 (1454-1522)||(1396617-1396685)
chr2 (1225-1347)||(2739138-2739260)
chr2 (1460-1523)||(5952642-5952705)
chr2 (1457-1523)||(34694089-34694155)
chr2 (1457-1523)||(34716501-34716567)
chr2 (1278-1347)||(17935070-17935139)
chr2 (1278-1347)||(20051887-20051956)
chr2 (1278-1347)||(22714360-22714429)
chr2 (1278-1347)||(39685233-39685302)
chr2 (1454-1521)||(7162900-7162967)
chr2 (1283-1360)||(31058012-31058089)
chr2 (1283-1383)||(39486167-39486267)
chr2 (1283-1362)||(39484809-39484888)
chr2 (1454-1488)||(3400140-3400174)
chr2 (132-190)||(19347579-19347637)
chr2 (272-314)||(25394063-25394105)
[»] chr1 (31 HSPs)
chr1 (1450-1523)||(19955843-19955916)
chr1 (1454-1523)||(40501707-40501776)
chr1 (1454-1523)||(17169082-17169151)
chr1 (1454-1523)||(6771920-6771989)
chr1 (1454-1523)||(51607358-51607427)
chr1 (1453-1521)||(21740851-21740919)
chr1 (1454-1522)||(27906646-27906714)
chr1 (1454-1523)||(6889736-6889805)
chr1 (1454-1523)||(6891582-6891651)
chr1 (1454-1523)||(14146426-14146495)
chr1 (1454-1523)||(22865378-22865447)
chr1 (1457-1521)||(13913401-13913465)
chr1 (1453-1523)||(5027677-5027747)
chr1 (1454-1514)||(9172940-9173000)
chr1 (1454-1514)||(9180922-9180982)
chr1 (1454-1522)||(44655868-44655936)
chr1 (1460-1523)||(16140181-16140244)
chr1 (1451-1523)||(3406545-3406617)
chr1 (1451-1523)||(3440203-3440275)
chr1 (1471-1523)||(41697072-41697124)
chr1 (1457-1521)||(50881557-50881621)
chr1 (1225-1347)||(2396381-2396503)
chr1 (1452-1523)||(5316806-5316877)
chr1 (1468-1523)||(34247153-34247208)
chr1 (1278-1347)||(9524714-9524783)
chr1 (1454-1523)||(23185553-23185622)
chr1 (1454-1514)||(1366797-1366857)
chr1 (1454-1522)||(4971536-4971604)
chr1 (255-301)||(36295363-36295409)
chr1 (1465-1522)||(44895775-44895832)
chr1 (1283-1383)||(47701993-47702093)
[»] scaffold0070 (1 HSPs)
scaffold0070 (1454-1523)||(1458-1527)
[»] chr6 (25 HSPs)
chr6 (1454-1523)||(27788608-27788677)
chr6 (1453-1523)||(17354073-17354143)
chr6 (1454-1523)||(30832443-30832512)
chr6 (1454-1522)||(13727317-13727385)
chr6 (1454-1522)||(21280665-21280733)
chr6 (1453-1523)||(24710913-24710983)
chr6 (1454-1523)||(20711638-20711707)
chr6 (1454-1523)||(27314097-27314166)
chr6 (1453-1523)||(235142-235212)
chr6 (1456-1521)||(1155767-1155832)
chr6 (1460-1513)||(19987277-19987330)
chr6 (1278-1347)||(22348101-22348170)
chr6 (1454-1522)||(21479615-21479683)
chr6 (1464-1523)||(28075905-28075964)
chr6 (1455-1522)||(33774238-33774305)
chr6 (1278-1347)||(13881725-13881794)
chr6 (1278-1347)||(17691978-17692047)
chr6 (1278-1347)||(25944655-25944724)
chr6 (1278-1347)||(35203189-35203258)
chr6 (132-190)||(33332804-33332862)
chr6 (142-190)||(35204414-35204462)
chr6 (1454-1521)||(19737612-19737678)
chr6 (1454-1488)||(12083030-12083064)
chr6 (133-190)||(14739301-14739358)
chr6 (1283-1336)||(24434270-24434323)
[»] chr5 (30 HSPs)
chr5 (1454-1523)||(16799240-16799309)
chr5 (1454-1523)||(27079128-27079197)
chr5 (1454-1523)||(36187795-36187864)
chr5 (1454-1523)||(38869279-38869348)
chr5 (1453-1523)||(7671049-7671119)
chr5 (1454-1523)||(16198709-16198778)
chr5 (1454-1522)||(15480006-15480074)
chr5 (1454-1523)||(22986473-22986542)
chr5 (1455-1523)||(28822253-28822321)
chr5 (1454-1523)||(9364407-9364476)
chr5 (1458-1523)||(19523315-19523380)
chr5 (1454-1523)||(27924198-27924267)
chr5 (1454-1523)||(31194528-31194597)
chr5 (1462-1519)||(40389461-40389518)
chr5 (1459-1523)||(2275006-2275070)
chr5 (1454-1522)||(16591990-16592058)
chr5 (1462-1522)||(34756289-34756349)
chr5 (1454-1523)||(31881348-31881417)
chr5 (1457-1523)||(30854445-30854511)
chr5 (1454-1523)||(23283943-23284012)
chr5 (1278-1347)||(25450743-25450812)
chr5 (1468-1523)||(7338115-7338170)
chr5 (1173-1362)||(24558430-24558619)
chr5 (1173-1362)||(24599462-24599651)
chr5 (272-315)||(24557452-24557495)
chr5 (272-315)||(24598484-24598527)
chr5 (272-314)||(27448000-27448042)
chr5 (132-190)||(31398720-31398778)
chr5 (272-314)||(43595298-43595340)
chr5 (272-314)||(43628092-43628134)
[»] chr3 (38 HSPs)
chr3 (1454-1523)||(47467803-47467872)
chr3 (1454-1523)||(50939152-50939221)
chr3 (1452-1523)||(48720427-48720498)
chr3 (1453-1523)||(34290553-34290623)
chr3 (1454-1523)||(8073257-8073326)
chr3 (1458-1523)||(37168486-37168551)
chr3 (1454-1523)||(54407073-54407142)
chr3 (1454-1516)||(29620364-29620426)
chr3 (1454-1523)||(21582891-21582960)
chr3 (1454-1522)||(27078486-27078554)
chr3 (1454-1522)||(27084283-27084351)
chr3 (1454-1522)||(38681011-38681079)
chr3 (1453-1523)||(43207156-43207226)
chr3 (1453-1522)||(36715941-36716010)
chr3 (1458-1523)||(44708595-44708660)
chr3 (1454-1522)||(50258542-50258610)
chr3 (1457-1523)||(36606083-36606149)
chr3 (1454-1522)||(53506802-53506869)
chr3 (1454-1522)||(54619121-54619189)
chr3 (1468-1523)||(18372601-18372656)
chr3 (1460-1522)||(48157248-48157310)
chr3 (1278-1347)||(10095932-10096001)
chr3 (1278-1347)||(10202818-10202887)
chr3 (1278-1347)||(10899995-10900064)
chr3 (258-309)||(40771336-40771387)
chr3 (1454-1521)||(42098922-42098989)
chr3 (1455-1521)||(3953816-3953882)
chr3 (1278-1336)||(10609910-10609968)
chr3 (1278-1348)||(47880014-47880084)
chr3 (1278-1347)||(16460450-16460519)
chr3 (1278-1347)||(54191494-54191563)
chr3 (1457-1523)||(53149235-53149301)
chr3 (142-190)||(22624330-22624378)
chr3 (132-190)||(8515395-8515453)
chr3 (132-190)||(32478641-32478699)
chr3 (133-190)||(2673949-2674006)
chr3 (1490-1523)||(9878642-9878675)
chr3 (142-191)||(54190290-54190339)
[»] scaffold0039 (1 HSPs)
scaffold0039 (1453-1523)||(106654-106724)
[»] scaffold0209 (1 HSPs)
scaffold0209 (1278-1348)||(268-338)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1454-1523)||(183175-183244)
[»] scaffold0559 (1 HSPs)
scaffold0559 (1290-1336)||(4835-4881)
[»] scaffold0197 (1 HSPs)
scaffold0197 (132-190)||(16037-16095)
[»] scaffold0078 (1 HSPs)
scaffold0078 (272-313)||(35188-35229)


Alignment Details
Target: chr7 (Bit Score: 796; Significance: 0; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 796; E-Value: 0
Query Start/End: Original strand, 288 - 1175
Target Start/End: Complemental strand, 45703739 - 45702846
Alignment:
Q  288 tgacacctttaaaaagtttaaggaatgatgtattcttatagagaatcactcataaactaaattgaaagtattaagaactaacaacgacctcaagttt--- 384  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||       
T  45703739 tgacacctttaaaaagtttaaggaatgatatattcttatagagaatcactcagaaactaaattgaaagtattaagaactaacaacgacctcaagtttaat 45703640  T
Q  385 --gttttaggatcttttaatgagttttgtggtaacaaaggtatttacccacttgatgaatgaaaattaacattttaaaatgtgtgagatgtatgcatatg 482  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45703639 ttgttttaggatcttttaatgagttttgtggtaacaaaggtatttacccacttgatgaatgaaaattaacattttaaaatgtgtgagatgtatgcatatg 45703540  T
Q  483 agagataggtaaccaaagagtttttggtctgaagttgtgagtacatcaacgtaattgatcaatagaagtctgtcaacacaacttcaagagaactatgaat 582  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45703539 agagataggtaaccaaagagtttcaggtctgaagttgtgagtacatcaacgtaattgatcaatagaagtctgtcaacacaacttcaagagaactatgaat 45703440  T
Q  583 gtttggagtggaaaaccaacaaactgctataatttcaaagttttcataactttggcgttcatgcatatcaagcaagaaaagattgatggtagggttgtaa 682  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45703439 gtttggagtggaaaaccaacaaactgctataatttcaaagttttcataactttggcgttcatgcatatcaagcaagaaaagattgatggtagggttgtaa 45703340  T
Q  683 aacgtgccttctttaatttggttatattgaacgagcaagaattacaagttgctgataatggaaaaagagaaggatcaggatttattataagcataaatat 782  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45703339 aacgtgtcttctttaatttggttatattgaacgagcaagaattacaagttgctgataatggaaaaagagaaggatcaggatttattataagcataaatat 45703240  T
Q  783 tatttttgatgagaccaatatgtggatgaagtgcaaggacctattgaatattcactcagaaacaaagtagaagaaaacatagtttgagttggagccttcc 882  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  45703239 tatttttgatgagaccaatatgtggatgaagtgcaaggacctactgaatattcactcagaaacaaagtagaagaaaacttagtttgagttggagccttcc 45703140  T
Q  883 actagtgagacaagagacaaagaagagggtgagactcctccatcaa--atactagaggaagacaaacaacaacggattttgaccatcaattggatagaga 980  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45703139 actagtgagacaagagacaaagaagagggtgagactcctccatcaaatatactagaggaagacaaacaacaacggattttgaccatcaattggatagaga 45703040  T
Q  981 tgaggaatatagggatattgttccaccaataagatatcgctttgttgttcatattttttatgctctaaatgcagatgaaaggttgaaaaacttagaaaca 1080  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45703039 tgaggaatatagggatattgttccaccaataagatatggctttgttgtccatattttttatgctctaaatgcggatgaaaggttgaaaaacttagaaaca 45702940  T
Q  1081 aaggccttcaaaaaagcatttgagagcaatgagagtctaaaatagtttgaaggccattaacgaggaaattcattcattggagatgaactgacttg 1175  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||| || |||||||||||||||||||||||||||| |||||    
T  45702939 aaggccttcaagaaagcatttgagagcaatgagagtctgaaatagttt-aaggccatgaatgaggaaattcattcattggagatgaactaacttg 45702846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 237; E-Value: 1e-130
Query Start/End: Original strand, 1173 - 1453
Target Start/End: Complemental strand, 45702810 - 45702530
Alignment:
Q  1173 ttggatgtaagtagatcttcaagaacaaagaaggtatttagagaattaaagaaccaaagtataaaacaagagttgtggctaagggtttttctcgggttaa 1272  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45702810 ttggatgtaagtggatcttcaagaacaaggaaggtatttagagaattaaagaaccaaagtataaaacaagagttgtggctaagggtttttcccgggttaa 45702711  T
Q  1273 gagatttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaatcagtacaatcttgaaatggaatta 1372  Q
    ||||||||||||||||||||||||| ||||| |||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45702710 gagatttgattacaatgagattttcgcatcgatggtaaaatattattttataagggtacttatgaagattgtaaatcagtacaatcttgaaatggaatta 45702611  T
Q  1373 atgaatgtgaaacatggtttgaagaagagagctggaagatggaaactactccttgtccaaacaggataggaagcaagtata 1453  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||    
T  45702610 atgaatgtgaaacatggtttgaagaagagagctggaagatggaaactactccttgtcctaacgggataggaagcatgtata 45702530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 45703977 - 45703740
Alignment:
Q  18 agttagggcattttgtttagttgaactagcagaattgtgtgttagggaatgttaaattagaggaattagaattttatgataattgcatattaaagaaaca 117  Q
    |||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  45703977 agttggggcattttgtctagttgaactagctgaattgtgtgttagggaatgttaaattagaggaattggaattttatgataattgcatattaaagaaaca 45703878  T
Q  118 acatacatttaagtaagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtctgacaatagcaacatatcttgacaata 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45703877 acatacatttaagtaagtgacattcataattctagtagaccttttgaatatgttcgttcaaa-ctttggggtctgacaatagcaacatatcttgacaata 45703779  T
Q  218 gtttctatttgctcattatgattgatgatttcttagaaa 256  Q
    |||||||||||||||||||||||||||||||||||||||    
T  45703778 gtttctatttgctcattatgattgatgatttcttagaaa 45703740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 5e-29
Query Start/End: Original strand, 1453 - 1523
Target Start/End: Original strand, 20091196 - 20091266
Alignment:
Q  1453 acagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20091196 acagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggccagtgataaaatcaaaacg 20091266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 5e-26
Query Start/End: Original strand, 1450 - 1523
Target Start/End: Complemental strand, 25010615 - 25010542
Alignment:
Q  1450 tatacagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||    
T  25010615 tatacagggccgtccctaagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaacg 25010542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 5e-26
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 29077404 - 29077335
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29077404 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggtcagtgataaaatcaaaacg 29077335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 5e-26
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 48983756 - 48983825
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  48983756 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggccaatgataaaatcaaaacg 48983825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 2e-25
Query Start/End: Original strand, 1454 - 1522
Target Start/End: Original strand, 23550988 - 23551056
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23550988 cagggtcgtccctaagaattcggaggctcggctctgagaatgaaaagaggccagtgataaaatcaaaac 23551056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 1453 - 1523
Target Start/End: Original strand, 10329326 - 10329396
Alignment:
Q  1453 acagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  10329326 acagggccgttcctaagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 10329396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 12596207 - 12596276
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  12596207 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 12596276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 1457 - 1520
Target Start/End: Original strand, 8171460 - 8171523
Alignment:
Q  1457 ggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaa 1520  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8171460 ggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggtcagtgataaaatcaaa 8171523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 1454 - 1521
Target Start/End: Original strand, 18776683 - 18776750
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaa 1521  Q
    ||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  18776683 cagggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggtcagtgataaaatcaaaa 18776750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 3e-21
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 24525599 - 24525668
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||    
T  24525599 cagggtcgtccctaagaattcggaggctcggctctgggaatgaaaagaggcctgtgataaaatcaaaacg 24525668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1454 - 1522
Target Start/End: Complemental strand, 26254178 - 26254110
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    |||||| |||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  26254178 cagggctgtccctgagaattcggaggctcggctttgggaatgaaaagaggtcagtgataaaatcaaaac 26254110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 7e-19
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 47984885 - 47984954
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||||||||||||  |||||||||||| ||||||||||| | |||||||||||||||||||    
T  47984885 cagggccgtccctaagaattcgttggctcggctctgggaatgaaaagatgccagtgataaaatcaaaacg 47984954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 7e-16
Query Start/End: Original strand, 1454 - 1522
Target Start/End: Complemental strand, 28749895 - 28749827
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    ||||||||||||| | |||||||||||||||||||| ||||||||||||  || |||||||||||||||    
T  28749895 cagggccgtccctgaaaattcggaggctcggctctgggaatgaaaagagaccaatgataaaatcaaaac 28749827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 1456 - 1523
Target Start/End: Complemental strand, 8239869 - 8239802
Alignment:
Q  1456 gggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||||||| |||||||||||||||  |||||||||||| || ||||||||| ||||||    
T  8239869 gggccgtccctaagaatttggaggctcggctctggaaatgaaaagaggccaatgataaaatgaaaacg 8239802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 1468 - 1523
Target Start/End: Original strand, 40357311 - 40357366
Alignment:
Q  1468 agaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||||||||||||  |||||||| |||||||||||||||||||||||    
T  40357311 agaattcggaggctcggctctggaaatgaaaaaaggtcagtgataaaatcaaaacg 40357366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 1278 - 1336
Target Start/End: Original strand, 25408400 - 25408458
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatg 1336  Q
    ||||||||||||| || || |||||||||||||||||||||| ||||||||||||||||    
T  25408400 ttgattacaatgaaatcttttcatcggtggtaaaacattgttctataagggtacttatg 25408458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Complemental strand, 3321983 - 3321914
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    ||||||||||||| || || ||| |||||||||||||||||| ||||||||||||||||  |||||||||    
T  3321983 ttgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgttaa 3321914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Original strand, 7073037 - 7073106
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    ||||||||||||| || || ||| |||||||||||||||||| ||||||||||||||||  |||||||||    
T  7073037 ttgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgttaa 7073106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 19692279 - 19692210
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||| |||||||||||||||| |||||||||||  ||||||||| |  |||||||||||||||||||    
T  19692279 cagggccctccctaagaattcggaagctcggctctggaaatgaaaagtgtccagtgataaaatcaaaacg 19692210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1278 - 1336
Target Start/End: Original strand, 25403643 - 25403701
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatg 1336  Q
    ||||||||||||| || || ||| |||||||||||||||||| ||||||||||||||||    
T  25403643 ttgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatg 25403701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 38414793 - 38414862
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||| |||||||||||||||||||||||| |||||  |||||||||||   ||| ||||||||||||||    
T  38414793 cagggtcgtccctaagaattcggaggctcgactctggaaatgaaaagagactagtcataaaatcaaaacg 38414862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 1454 - 1520
Target Start/End: Complemental strand, 10955671 - 10955605
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaa 1520  Q
    |||||| |||| | ||||||||||||||| |||| | ||||||| ||||||||||||| ||||||||    
T  10955671 cagggctgtccatgagaattcggaggctcagctcggggaatgaatagaggtcagtgattaaatcaaa 10955605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 1283 - 1383
Target Start/End: Complemental strand, 21986050 - 21985950
Alignment:
Q  1283 tacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaatcagtacaatcttgaaatggaattaatgaatgtga 1382  Q
    ||||||||||| |||||| ||||||| ||||||||||  |||||| ||||||||   ||||| ||||| | |||||||||  |||||  |||| ||||||    
T  21986050 tacaatgagatcttctcaccggtggtgaaacattgttccataaggatacttatggctattgtgaatcaattcaatcttgagttggaacaaatggatgtga 21985951  T
Q  1383 a 1383  Q
    |    
T  21985950 a 21985950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 1455 - 1523
Target Start/End: Original strand, 33162257 - 33162325
Alignment:
Q  1455 agggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||| | |||||||||||||||  |||| |||| || ||||||||||||| ||||||||| ||||||    
T  33162257 agggccattcctaagaattcggagattcggttctgggagtgaaaagaggtcaatgataaaattaaaacg 33162325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 4860951 - 4860908
Alignment:
Q  272 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatga 315  Q
    |||||||||| ||||||||||| ||| |||||||||||||||||    
T  4860951 ttttgaaaaacaaaagtgacacatttgaaaagtttaaggaatga 4860908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 18411877 - 18411834
Alignment:
Q  272 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatga 315  Q
    |||||||||| ||||||||||| ||| |||||||||||||||||    
T  18411877 ttttgaaaaaaaaaagtgacacattttaaaagtttaaggaatga 18411834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1283 - 1362
Target Start/End: Original strand, 24272856 - 24272935
Alignment:
Q  1283 tacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaatcagtacaatcttga 1362  Q
    ||||||||||| |||||| ||||||| ||||||||||  |||||| ||||||||   ||||| ||||| | |||||||||    
T  24272856 tacaatgagatcttctcaccggtggtgaaacattgttccataaggatacttatggctattgtgaatcaattcaatcttga 24272935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 16883286 - 16883228
Alignment:
Q  132 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 190  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  16883286 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 16883228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 21644256 - 21644214
Alignment:
Q  272 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatg 314  Q
    |||||||||| ||||||||||| ||| ||||||||||||||||    
T  21644256 ttttgaaaaacaaaagtgacacatttgaaaagtttaaggaatg 21644214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 24263051 - 24263109
Alignment:
Q  132 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 190  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  24263051 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 24263109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 2e-28; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-28
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 42600967 - 42600898
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42600967 cagggccgtccctaagaattcggaggctcggctctgaaaatgaaaagaggtcagtgataaaatcaaaacg 42600898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 1453 - 1523
Target Start/End: Complemental strand, 10917576 - 10917506
Alignment:
Q  1453 acagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10917576 acagggctgtccttaagaattcggaggctcggctctgagaatgaaaagaggccagtgataaaatcaaaacg 10917506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 23606548 - 23606617
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||    
T  23606548 cagggccgtccctaagaattcggaggctcggctctgggaatgaaaagagaccagtgataaaatcaaaacg 23606617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 23798179 - 23798248
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||    
T  23798179 cagggccgtccctaagaattcggaggctcggctctgggaacgaaaagaggtcaatgataaaatcaaaacg 23798248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 37430076 - 37430145
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  37430076 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 37430145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1454 - 1522
Target Start/End: Original strand, 2952137 - 2952205
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    ||||||||||||| ||||||||||||||||||||||  |||||||||||| ||||||||||||||||||    
T  2952137 cagggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaac 2952205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 1457 - 1523
Target Start/End: Original strand, 13534609 - 13534675
Alignment:
Q  1457 ggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||| | |||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  13534609 ggccgtccctgaaaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 13534675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 1457 - 1523
Target Start/End: Original strand, 13624149 - 13624215
Alignment:
Q  1457 ggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||| | |||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  13624149 ggccgtccctgaaaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 13624215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 7e-19
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 20003728 - 20003797
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||| |||||| ||||||||||||| | ||||||||||||| |||||||||||||||||||    
T  20003728 cagggccgtccctgagaatttggaggctcggctcggggaatgaaaagaggccagtgataaaatcaaaacg 20003797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 7e-19
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 41879364 - 41879295
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||||||||| ||||||||||| ||||||    
T  41879364 cagggccgtccctgagaattcgaaggctcggctctgggaatgaaaagaggttagtgataaaattaaaacg 41879295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 7e-19
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 45476001 - 45475932
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||| ||||| |||||||||||||||||||| | ||||||||||||| |||||||||||||||||||    
T  45476001 cagggccatccctgagaattcggaggctcggctcggggaatgaaaagaggccagtgataaaatcaaaacg 45475932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 1454 - 1522
Target Start/End: Original strand, 3048435 - 3048503
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    |||||||||| || ||||||||||||||||||||||  |||||||||||| ||||||||||||||||||    
T  3048435 cagggccgtctctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaac 3048503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Original strand, 21040416 - 21040485
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    ||||||||||||| || || ||| |||||||||||||||||| |||||||||||||||| ||||||||||    
T  21040416 ttgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggagattgttaa 21040485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 1457 - 1522
Target Start/End: Complemental strand, 30883512 - 30883447
Alignment:
Q  1457 ggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    |||||||||| ||||||| ||||||||||||||  |||||||||||| ||||||||||||||||||    
T  30883512 ggccgtccctgagaattcagaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaac 30883447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Complemental strand, 4814421 - 4814352
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    ||||||||||||| || || ||| |||||||||||||||||| ||||||||||||||||  |||||||||    
T  4814421 ttgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgttaa 4814352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Original strand, 28893750 - 28893819
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    ||||||||||||| || || ||| |||||||||||||||||| ||||||||||||||||  |||||||||    
T  28893750 ttgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgttaa 28893819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1468 - 1522
Target Start/End: Original strand, 5860674 - 5860728
Alignment:
Q  1468 agaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    |||||| |||||||||||||||  ||||||||||||||| |||||||||||||||    
T  5860674 agaatttggaggctcggctctggaaatgaaaagaggtcaatgataaaatcaaaac 5860728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Complemental strand, 16754455 - 16754386
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    ||||||||||||| || || ||| |||| ||||||||||||| ||||||||||||||||  |||||||||    
T  16754455 ttgattacaatgaaatcttttcaccggtagtaaaacattgttctataagggtacttatggcgattgttaa 16754386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Original strand, 28330881 - 28330950
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    ||||||||||||| || || ||| |||| ||||||||||||| ||||||||||||||||  |||||||||    
T  28330881 ttgattacaatgaaatcttttcaccggtagtaaaacattgttctataagggtacttatggcgattgttaa 28330950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Original strand, 25682893 - 25682962
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    ||||||||||||| || || ||| |||||||||| ||||||| ||||| ||||||||||  |||||||||    
T  25682893 ttgattacaatgaaatcttttcaccggtggtaaagcattgttctataaaggtacttatggcgattgttaa 25682962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 1283 - 1383
Target Start/End: Original strand, 26401306 - 26401406
Alignment:
Q  1283 tacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaatcagtacaatcttgaaatggaattaatgaatgtga 1382  Q
    ||||||||||| |||||| ||||||| ||||||||||  |||||| ||||||||   ||||| ||||| | |||||||||  |||||  |||| ||||||    
T  26401306 tacaatgagatattctcaccggtggtgaaacattgttccataaggatacttatggctattgtgaatcaattcaatcttgagttggaacaaatggatgtga 26401405  T
Q  1383 a 1383  Q
    |    
T  26401406 a 26401406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 10685992 - 10686050
Alignment:
Q  132 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 190  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  10685992 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 10686050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 26299592 - 26299550
Alignment:
Q  272 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatg 314  Q
    |||||||||| ||||||||||| ||| ||||||||||||||||    
T  26299592 ttttgaaaaacaaaagtgacacatttgaaaagtttaaggaatg 26299550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 35743748 - 35743690
Alignment:
Q  132 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 190  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  35743748 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 35743690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1290 - 1336
Target Start/End: Original strand, 40827259 - 40827305
Alignment:
Q  1290 agattttctcatcggtggtaaaacattgttttataagggtacttatg 1336  Q
    ||||||||||| | ||| ||||||||||||| |||||||||||||||    
T  40827259 agattttctcaccagtgttaaaacattgtttaataagggtacttatg 40827305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1454 - 1499
Target Start/End: Original strand, 33963268 - 33963313
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaa 1499  Q
    ||||||||| | | ||||||||||||||||||| ||||||||||||    
T  33963268 cagggccgttcatgagaattcggaggctcggctttgagaatgaaaa 33963313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 2e-28; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-28
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 54083160 - 54083229
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54083160 cagggccgtccctaaaaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 54083229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 5e-26
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 34027768 - 34027699
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  34027768 cagggccgtccctaagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 34027699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 1453 - 1523
Target Start/End: Complemental strand, 32915576 - 32915506
Alignment:
Q  1453 acagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  32915576 acagggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 32915506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 16882313 - 16882382
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||    
T  16882313 cagggccgtccctaagaattcggaggctcggctctaggaatgaaaagaagtcagtgataaaatcaaaacg 16882382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 32128774 - 32128705
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  32128774 cagggccgtccctaagaatttggaggctcggctctgggaatgaaaaaaggtcagtgataaaatcaaaacg 32128705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 37777140 - 37777209
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37777140 cagggctgtccctaaaaattcggaggctcggctctgggaatgaaaagaggtcagtgataaaatcaaaacg 37777209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 1454 - 1522
Target Start/End: Complemental strand, 55255447 - 55255379
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  55255447 cagggccgtccctgagaattcggaggctcggctctgaaaatgaaaagaggccagtgataaaatcaaaac 55255379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 1460 - 1523
Target Start/End: Original strand, 38352189 - 38352252
Alignment:
Q  1460 cgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  38352189 cgtccctaagaattcggaggctcggctctgggaatgaaaagagatcagtgataaaatcaaaacg 38352252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 7e-22
Query Start/End: Original strand, 1453 - 1523
Target Start/End: Complemental strand, 40089715 - 40089645
Alignment:
Q  1453 acagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||| |||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||    
T  40089715 acagggtcgtccctaagaattcggaggctcggctcttggaatgaaaagaagtcagtgataaaatcaaaacg 40089645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 7e-22
Query Start/End: Original strand, 1453 - 1523
Target Start/End: Complemental strand, 54780969 - 54780899
Alignment:
Q  1453 acagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||| |||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||    
T  54780969 acagggccgtccctgagaattcggaggcttggctctgggaatgaaaagaggccagtgataaaatcaaaacg 54780899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1454 - 1522
Target Start/End: Original strand, 2790659 - 2790727
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||    
T  2790659 cagggccgtctctaagaattcggaggctcggctctgggaatgaaaagagaccagtgataaaatcaaaac 2790727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 1465 - 1523
Target Start/End: Original strand, 43455460 - 43455518
Alignment:
Q  1465 ctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  43455460 ctaagaattcggaggctcgactctgggaatgaaaagaggtcagtgataaaatcaaaacg 43455518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 7e-19
Query Start/End: Original strand, 1458 - 1523
Target Start/End: Complemental strand, 1105717 - 1105652
Alignment:
Q  1458 gccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||| | ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  1105717 gccgtccttgagaattcagaggctcggctctgggaatgaaaagaggtcagtgataaaatcaaaacg 1105652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 7e-19
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 24969786 - 24969717
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||  |||||||||| |||||||    
T  24969786 cagggccgtccctaagaattcggaggctcgactctgggaatgaaaagaggctagtgataaaaacaaaacg 24969717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 1453 - 1521
Target Start/End: Original strand, 10428115 - 10428183
Alignment:
Q  1453 acagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaa 1521  Q
    ||||||||||||   |||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  10428115 acagggccgtcctcgagaattcggaggctcggctctgggaatgaaaagaggtcagtgctaaaatcaaaa 10428183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 1458 - 1521
Target Start/End: Complemental strand, 47129172 - 47129109
Alignment:
Q  1458 gccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaa 1521  Q
    ||||||||| ||||||||||||||||||||||  |||||||||||| |||||||||||||||||    
T  47129172 gccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaa 47129109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 1453 - 1523
Target Start/End: Complemental strand, 16845211 - 16845142
Alignment:
Q  1453 acagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||||||||||||||||||||||||||  |||||||| | | |||||||||||||||||||    
T  16845211 acagggccgtccctaagaattcggaggctcggctctggaaatgaaaa-aagccagtgataaaatcaaaacg 16845142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 17679589 - 17679520
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||| || ||||||||||||||||| |||| ||||||||||||  |||||||||||||||||||    
T  17679589 cagggccgtctctgagaattcggaggctcggttctgggaatgaaaagagaccagtgataaaatcaaaacg 17679520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 19498691 - 19498622
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||| ||||||||||||||||||||||||  ||||||||| ||| || ||||||||||||||||    
T  19498691 cagggccgtcactaagaattcggaggctcggctctaggaatgaaaacaggccaatgataaaatcaaaacg 19498622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 7e-16
Query Start/End: Original strand, 1454 - 1522
Target Start/End: Original strand, 34768492 - 34768560
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    ||||| ||||||| ||||||||||||||||||| || |||||||||||||  |||||||||||||||||    
T  34768492 cagggtcgtccctgagaattcggaggctcggctttgggaatgaaaagaggctagtgataaaatcaaaac 34768560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 1454 - 1517
Target Start/End: Original strand, 5128758 - 5128821
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatc 1517  Q
    ||||||||||||| ||||||  |||||||||||||| ||||||||||||| |||||||||||||    
T  5128758 cagggccgtccctgagaatttagaggctcggctctgggaatgaaaagaggccagtgataaaatc 5128821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 1468 - 1522
Target Start/End: Complemental strand, 35465281 - 35465227
Alignment:
Q  1468 agaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    ||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  35465281 agaattcggaggctcgattctgggaatgaaaagaggtcagtgataaaatcaaaac 35465227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 10979092 - 10979023
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||| || |||||||||||| |  |||||| |||||||||||||| ||||||||||||||||||    
T  10979092 cagggccgtctctgagaattcggaggtttagctctgggaatgaaaagaggttagtgataaaatcaaaacg 10979023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 16922245 - 16922314
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||| |||||| ||||||||| || || ||||||||||||  |||||||||||||||||||    
T  16922245 cagggccgtccctgagaatttggaggctcgactttgggaatgaaaagagaccagtgataaaatcaaaacg 16922314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 1454 - 1514
Target Start/End: Complemental strand, 48209436 - 48209376
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaa 1514  Q
    ||||||||||||| |||||||||||||||||||||| || |||||||||  ||||||||||    
T  48209436 cagggccgtccctgagaattcggaggctcggctctgggagtgaaaagagaccagtgataaa 48209376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 1225 - 1347
Target Start/End: Original strand, 15315250 - 15315372
Alignment:
Q  1225 accaaagtataaaacaagagttgtggctaagggtttttctcgggtt-aagagatttgattacaatgagattttctcatcggtggtaaaacattgttttat 1323  Q
    ||||| ||||||  ||||| |||| || ||||||||| ||| |||| ||| |||| || |||||||| || || ||| |||||||||||||||||| |||    
T  15315250 accaaggtataaggcaagacttgtagcaaagggttttactcaggttgaagggatt-gactacaatgaaatcttttcaccggtggtaaaacattgttctat 15315348  T
Q  1324 aagggtacttatgaagattgttaa 1347  Q
    |||||||||||||  |||||||||    
T  15315349 aagggtacttatggcgattgttaa 15315372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 1470 - 1521
Target Start/End: Original strand, 23508443 - 23508494
Alignment:
Q  1470 aattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaa 1521  Q
    ||||||||||||||||| || ||||||||||||| |||||||||||||||||    
T  23508443 aattcggaggctcggctttgggaatgaaaagaggccagtgataaaatcaaaa 23508494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Original strand, 4568329 - 4568398
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    ||||||||||||| || || ||| ||||| |||||||||||| ||||||||||||||||  |||||||||    
T  4568329 ttgattacaatgaaatcttttcaccggtgataaaacattgttctataagggtacttatggcgattgttaa 4568398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Original strand, 16637147 - 16637216
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    ||||||||||||| || || ||| ||||||||||||||||||  |||||||||||||||  |||||||||    
T  16637147 ttgattacaatgaaatcttttcagcggtggtaaaacattgttcaataagggtacttatggcgattgttaa 16637216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1468 - 1521
Target Start/End: Original strand, 38209522 - 38209575
Alignment:
Q  1468 agaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaa 1521  Q
    |||||| |||||||||||||||  |||||||||||| |||||||||||||||||    
T  38209522 agaatttggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaa 38209575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1470 - 1522
Target Start/End: Original strand, 2975358 - 2975410
Alignment:
Q  1470 aattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    |||||| | |||||||||||| ||||||||||||||| |||||||||||||||    
T  2975358 aattcgaatgctcggctctgaaaatgaaaagaggtcaatgataaaatcaaaac 2975410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1454 - 1509
Target Start/End: Complemental strand, 13460360 - 13460305
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtg 1509  Q
    ||||||||||| | |||||||||||||||| ||||| |||| ||||||||||||||    
T  13460360 cagggccgtccttgagaattcggaggctcgactctgggaataaaaagaggtcagtg 13460305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1453 - 1523
Target Start/End: Complemental strand, 37514849 - 37514781
Alignment:
Q  1453 acagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||| |||||| |||||||| ||   | ||||||||||||| |||||||||||||||||||    
T  37514849 acagggccgtccctgagaatttggaggctcagcg--gggaatgaaaagaggccagtgataaaatcaaaacg 37514781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1470 - 1523
Target Start/End: Complemental strand, 51964884 - 51964831
Alignment:
Q  1470 aattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||| |||||||||| ||||||||||||| |  ||||||||||||||||    
T  51964884 aattcggagactcggctctgggaatgaaaagaggccgatgataaaatcaaaacg 51964831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 1283 - 1383
Target Start/End: Original strand, 3791089 - 3791189
Alignment:
Q  1283 tacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaatcagtacaatcttgaaatggaattaatgaatgtga 1382  Q
    ||||||||||| |||||| ||||||| ||||||||||  |||||| ||||||||   ||||| ||||| | |||||||||  |||||  |||| ||||||    
T  3791089 tacaatgagatcttctcaccggtggtgaaacattgttccataaggatacttatggctattgtgaatcaattcaatcttgagttggaacaaatggatgtga 3791188  T
Q  1383 a 1383  Q
    |    
T  3791189 a 3791189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 1454 - 1514
Target Start/End: Original strand, 9578575 - 9578635
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaa 1514  Q
    ||||||||||| | |||||||||||||||| ||||| || ||||||||||  |||||||||    
T  9578575 cagggccgtccttgagaattcggaggctcgactctgggagtgaaaagaggcaagtgataaa 9578635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 753 - 825
Target Start/End: Original strand, 15314749 - 15314821
Alignment:
Q  753 aggatcaggatttattataagcataaatattatttttgatgagaccaatatgtggatgaagtgcaaggaccta 825  Q
    |||||||  ||||||||||||||   || ||||||||||||||||| | ||| ||||||||||||| ||||||    
T  15314749 aggatcaaaatttattataagcagggatgttatttttgatgagacccacatggggatgaagtgcaaagaccta 15314821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1457 - 1523
Target Start/End: Original strand, 35779248 - 35779314
Alignment:
Q  1457 ggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||| | |||||||||||| ||| |||   |||||||||||||  ||||||||||||||||||    
T  35779248 ggccgtccttgagaattcggaggttcgactcgaggaatgaaaagaggctagtgataaaatcaaaacg 35779314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1450 - 1488
Target Start/End: Original strand, 45560071 - 45560109
Alignment:
Q  1450 tatacagggccgtccctaagaattcggaggctcggctct 1488  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  45560071 tatacagggccgtccttaagtattcggaggctcggctct 45560109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 47745865 - 47745914
Alignment:
Q  265 gttcatattttgaaaaataaaagtgacacctttaaaaagtttaaggaatga 315  Q
    ||||| ||||||||||||||| ||||||| ||| |||||||||||||||||    
T  47745865 gttcacattttgaaaaataaa-gtgacacatttgaaaagtttaaggaatga 47745914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 2e-28; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 2e-28
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 27506659 - 27506728
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27506659 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggccagtgataaaatcaaaacg 27506728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 7e-22
Query Start/End: Original strand, 1453 - 1523
Target Start/End: Complemental strand, 26716314 - 26716244
Alignment:
Q  1453 acagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||||||||||||  ||||||||| || |||||||||||||||||||||||||||||||||    
T  26716314 acagggccgtccctaagaattcgttggctcggctttgggaatgaaaagaggtcagtgataaaatcaaaacg 26716244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 3e-21
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 24410623 - 24410554
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||||||||||||||||||||| | || ||||||||||||| |||||||||||||||||||    
T  24410623 cagggccgtccctaagaattcggaggctcggttttgggaatgaaaagaggccagtgataaaatcaaaacg 24410554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1454 - 1522
Target Start/End: Complemental strand, 4506078 - 4506010
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    ||||||||||||| ||||||||||||||||||||||  |||||||||||| ||||||||||||||||||    
T  4506078 cagggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaac 4506010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1454 - 1522
Target Start/End: Original strand, 8906996 - 8907064
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    ||||||||| ||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  8906996 cagggccgttcctgagaattcggaggctcggctctgaaaatgaaaagaggccagtgataaaatcaaaac 8907064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 1450 - 1521
Target Start/End: Original strand, 12337361 - 12337432
Alignment:
Q  1450 tatacagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaa 1521  Q
    ||||||||||||||||| |||||||| |||||||||||||  |||||||||||| |||||||||||||||||    
T  12337361 tatacagggccgtccctgagaattcgaaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaa 12337432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 7e-19
Query Start/End: Original strand, 1453 - 1522
Target Start/End: Complemental strand, 3155402 - 3155333
Alignment:
Q  1453 acagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    |||||||||||||| ||||||||||||||||||| | | ||||||||||||||||||||||||| |||||    
T  3155402 acagggccgtccctgagaattcggaggctcggctttaaaaatgaaaagaggtcagtgataaaattaaaac 3155333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 7e-19
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 29939781 - 29939850
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||| |||||||| |||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||    
T  29939781 caggaccgtccctgagaattcgaaggctcggctctgggaataaaaagaggtcagtgataaaatcaaaacg 29939850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 1457 - 1521
Target Start/End: Complemental strand, 6965186 - 6965122
Alignment:
Q  1457 ggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaa 1521  Q
    |||||||||| ||||||||||||||||||||||  |||||||||||| |||||||||||||||||    
T  6965186 ggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaa 6965122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 1458 - 1522
Target Start/End: Complemental strand, 40636317 - 40636253
Alignment:
Q  1458 gccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    ||||||||| ||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||    
T  40636317 gccgtccctgagaattcggaggctcagctctgggaatgaaaagaggccagtgataaaatcaaaac 40636253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 1457 - 1523
Target Start/End: Original strand, 10762488 - 10762554
Alignment:
Q  1457 ggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||||||| |||||||| |||||| ||||||||||||| |||||||||||| ||||||    
T  10762488 ggccgtccctaagaatttggaggctcagctctgggaatgaaaagaggccagtgataaaattaaaacg 10762554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 1454 - 1521
Target Start/End: Complemental strand, 3953188 - 3953121
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaa 1521  Q
    ||||| ||||||| |||||| |||||||||||| ||  ||||||||||||||||||||||||||||||    
T  3953188 cagggtcgtccctgagaatttggaggctcggctttggaaatgaaaagaggtcagtgataaaatcaaaa 3953121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 8327801 - 8327732
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||| |||||||||| ||||||||||||| | ||||  ||||||||||| ||||||||||||||||||||    
T  8327801 caggaccgtccctaaaaattcggaggctcagttctggaaatgaaaagagatcagtgataaaatcaaaacg 8327732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 9046213 - 9046144
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||| |||||||||  ||||| |||||| |||| |||||||| |||||||||||||||||||    
T  9046213 cagggccgtcccaaagaattcgttggctcagctctgggaattaaaagaggccagtgataaaatcaaaacg 9046144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 1454 - 1522
Target Start/End: Original strand, 1396617 - 1396685
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    ||||||| ||| | |||||||||||||||| |||||  |||||||||||| ||||||||||||||||||    
T  1396617 cagggccttccttgagaattcggaggctcgactctggaaatgaaaagaggccagtgataaaatcaaaac 1396685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 1225 - 1347
Target Start/End: Original strand, 2739138 - 2739260
Alignment:
Q  1225 accaaagtataaaacaagagttgtggctaagggtttttctcgggtt-aagagatttgattacaatgagattttctcatcggtggtaaaacattgttttat 1323  Q
    ||||| ||||||  ||||| |||| |||||||||||| ||| |||  ||| |||| ||||||||||| || || ||| || ||||||||||||||| |||    
T  2739138 accaaggtataaggcaagacttgtagctaagggttttactcaggtggaagggatt-gattacaatgaaatcttttcaccgctggtaaaacattgttctat 2739236  T
Q  1324 aagggtacttatgaagattgttaa 1347  Q
    |||||||||||||  |||||||||    
T  2739237 aagggtacttatggcgattgttaa 2739260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 1460 - 1523
Target Start/End: Original strand, 5952642 - 5952705
Alignment:
Q  1460 cgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||| |||||||||||| ||||||||  ||||||||||||| || ||||||||||||||||    
T  5952642 cgtccctgagaattcggaggttcggctctcggaatgaaaagaggccaatgataaaatcaaaacg 5952705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1457 - 1523
Target Start/End: Complemental strand, 34694155 - 34694089
Alignment:
Q  1457 ggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||| |||||||||||| |||| ||||  |||||||||||| | |||||||||||||||||    
T  34694155 ggccgtccctgagaattcggaggttcggatctggaaatgaaaagaggcccgtgataaaatcaaaacg 34694089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1457 - 1523
Target Start/End: Complemental strand, 34716567 - 34716501
Alignment:
Q  1457 ggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||| |||||||||||| |||| ||||  |||||||||||| | |||||||||||||||||    
T  34716567 ggccgtccctgagaattcggaggttcggatctggaaatgaaaagaggcccgtgataaaatcaaaacg 34716501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Original strand, 17935070 - 17935139
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    |||| |||||||| || || ||| |||||||||||||||||| ||||||||||||||||  |||||||||    
T  17935070 ttgactacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgttaa 17935139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Complemental strand, 20051956 - 20051887
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    ||||||| ||||| || || ||| |||||||||||||||||| ||||||||||||||||  |||||||||    
T  20051956 ttgattataatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgttaa 20051887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Complemental strand, 22714429 - 22714360
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    ||||||||||||| || || ||| |||| ||||||||||||| ||||||||||||||||  |||||||||    
T  22714429 ttgattacaatgaaatcttttcaccggtagtaaaacattgttctataagggtacttatggcgattgttaa 22714360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Original strand, 39685233 - 39685302
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    ||||||||||||| || || ||| |||| ||||||||||||| ||||||||||||||||  |||||||||    
T  39685233 ttgattacaatgaaatcttttcaccggtagtaaaacattgttctataagggtacttatggcgattgttaa 39685302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1454 - 1521
Target Start/End: Complemental strand, 7162967 - 7162900
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaa 1521  Q
    ||||||||||||| ||| |||| |||||| |||| | ||||||||||||| |||||||||||| ||||    
T  7162967 cagggccgtccctgagatttcgaaggctcagctcggggaatgaaaagaggccagtgataaaattaaaa 7162900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1283 - 1360
Target Start/End: Complemental strand, 31058089 - 31058012
Alignment:
Q  1283 tacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaatcagtacaatctt 1360  Q
    |||||| |||| |||||||||||||| ||||||||||  |||||| |||||||||  ||||| ||||| | |||||||    
T  31058089 tacaatcagatcttctcatcggtggtgaaacattgttccataaggatacttatgaccattgtgaatcaattcaatctt 31058012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 1283 - 1383
Target Start/End: Original strand, 39486167 - 39486267
Alignment:
Q  1283 tacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaatcagtacaatcttgaaatggaattaatgaatgtga 1382  Q
    ||||||||||| |||||| ||||||| ||||||||||  |||||| ||||||||   ||||| ||||| | |||||||||  |||||  |||| ||||||    
T  39486167 tacaatgagatcttctcaccggtggtgaaacattgttccataaggatacttatggctattgtgaatcaattcaatcttgagttggaagaaatggatgtga 39486266  T
Q  1383 a 1383  Q
    |    
T  39486267 a 39486267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1283 - 1362
Target Start/End: Complemental strand, 39484888 - 39484809
Alignment:
Q  1283 tacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaatcagtacaatcttga 1362  Q
    ||||||||||| |||||| ||||||| ||||||||||  |||||| ||||||||   ||||| ||||| | |||||||||    
T  39484888 tacaatgagatattctcaccggtggtgaaacattgttccataaggatacttatggctattgtgaatcaattcaatcttga 39484809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1454 - 1488
Target Start/End: Complemental strand, 3400174 - 3400140
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctct 1488  Q
    |||||||||||||||| ||||||||||||||||||    
T  3400174 cagggccgtccctaagtattcggaggctcggctct 3400140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 19347637 - 19347579
Alignment:
Q  132 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 190  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  19347637 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 19347579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 25394105 - 25394063
Alignment:
Q  272 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatg 314  Q
    |||||||||| ||||||||||| ||| ||||||||||||||||    
T  25394105 ttttgaaaaacaaaagtgacacatttgaaaagtttaaggaatg 25394063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 2e-28; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 2e-28
Query Start/End: Original strand, 1450 - 1523
Target Start/End: Complemental strand, 19955916 - 19955843
Alignment:
Q  1450 tatacagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19955916 tatacagggctgtccctaagaattcggaggctcggctctgagaatgaaaagaggccagtgataaaatcaaaacg 19955843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-28
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 40501707 - 40501776
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40501707 cagggccgtccctaagaattcggaggctcgactctgagaatgaaaagaggtcagtgataaaatcaaaacg 40501776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 5e-26
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 17169151 - 17169082
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  17169151 cagggccgtccctaagaattcggaggctcggctctggaaatgaaaagaggtcagtgataaaatcaaaacg 17169082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 6771989 - 6771920
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  6771989 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 6771920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 51607358 - 51607427
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  51607358 caggaccgtccctaaaaattcggaggctcggctctgggaatgaaaagaggtcagtgataaaatcaaaacg 51607427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 1453 - 1521
Target Start/End: Original strand, 21740851 - 21740919
Alignment:
Q  1453 acagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaa 1521  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21740851 acagggccgtccttgagaattcggaggctcggctctgagaatgaaaagaggccagtgataaaatcaaaa 21740919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 1454 - 1522
Target Start/End: Original strand, 27906646 - 27906714
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  27906646 cagggccgtccctgagaattcggaggctcggctctgaaaatgaaaagaggccagtgataaaatcaaaac 27906714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 3e-21
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 6889805 - 6889736
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||| | | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6889805 cagggccgtccttgaaaattcggaggctcggttctgagaatgaaaagaggtcagtgataaaatcaaaacg 6889736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 3e-21
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 6891651 - 6891582
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||| | | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6891651 cagggccgtccttgaaaattcggaggctcggttctgagaatgaaaagaggtcagtgataaaatcaaaacg 6891582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 3e-21
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 14146495 - 14146426
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||| |||||||||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  14146495 cagggccgtccctgagaattcggaggctcggctcttggaatgaaaagaggccagtgataaaatcaaaacg 14146426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 3e-21
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 22865378 - 22865447
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||| ||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||    
T  22865378 cagggccgtccctgagaattcggaggcacggctctgggaatgaaaagaggtcaatgataaaatcaaaacg 22865447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1457 - 1521
Target Start/End: Original strand, 13913401 - 13913465
Alignment:
Q  1457 ggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaa 1521  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||    
T  13913401 ggccgtccctaagaattcggaggcttggctctgagaatgaaaagatgccagtgataaaatcaaaa 13913465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 1453 - 1523
Target Start/End: Complemental strand, 5027747 - 5027677
Alignment:
Q  1453 acagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||| |||||||||||||||| ||| | ||||||||||||| |||||||||||||||||||    
T  5027747 acagggccgtccctgagaattcggaggctcgactcggggaatgaaaagaggccagtgataaaatcaaaacg 5027677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 1454 - 1514
Target Start/End: Original strand, 9172940 - 9173000
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaa 1514  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||    
T  9172940 cagggccgtccctaagaattcggaggctcggctctgggaatgaaaagaggccggtgataaa 9173000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 1454 - 1514
Target Start/End: Original strand, 9180922 - 9180982
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaa 1514  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||    
T  9180922 cagggccgtccctaagaattcggaggctcggctctgggaatgaaaagaggccggtgataaa 9180982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 1454 - 1522
Target Start/End: Complemental strand, 44655936 - 44655868
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    ||||||||||||| ||||||||||||||||||||||  |||||||||||  ||||||||||||||||||    
T  44655936 cagggccgtccctgagaattcggaggctcggctctggaaatgaaaagagaccagtgataaaatcaaaac 44655868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 1460 - 1523
Target Start/End: Complemental strand, 16140244 - 16140181
Alignment:
Q  1460 cgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||| |||||||||||||||||||||| ||||||||||||| | |||||||||||||||||    
T  16140244 cgtccctgagaattcggaggctcggctctgggaatgaaaagaggccggtgataaaatcaaaacg 16140181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 7e-16
Query Start/End: Original strand, 1451 - 1523
Target Start/End: Complemental strand, 3406617 - 3406545
Alignment:
Q  1451 atacagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||| |||||| |||||| |||||||| |||| | |||||||||||||||||||||||||| ||||||    
T  3406617 atacagggctgtccctgagaatttggaggctcagctcggggaatgaaaagaggtcagtgataaaatgaaaacg 3406545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 7e-16
Query Start/End: Original strand, 1451 - 1523
Target Start/End: Original strand, 3440203 - 3440275
Alignment:
Q  1451 atacagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||| |||||| |||||| |||||||| |||| | |||||||||||||||||||||||||| ||||||    
T  3440203 atacagggctgtccctgagaatttggaggctcagctcggggaatgaaaagaggtcagtgataaaatgaaaacg 3440275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 7e-16
Query Start/End: Original strand, 1471 - 1523
Target Start/End: Original strand, 41697072 - 41697124
Alignment:
Q  1471 attcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  41697072 attcggaagctcggctctgggaatgaaaagaggtcagtgataaaatcaaaacg 41697124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 7e-16
Query Start/End: Original strand, 1457 - 1521
Target Start/End: Complemental strand, 50881621 - 50881557
Alignment:
Q  1457 ggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaa 1521  Q
    |||||||||| ||||||||||||||||||||||  |||||||||||| |||||||||||| ||||    
T  50881621 ggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaattaaaa 50881557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 1225 - 1347
Target Start/End: Complemental strand, 2396503 - 2396381
Alignment:
Q  1225 accaaagtataaaacaagagttgtggctaagggtttttctcgggtt-aagagatttgattacaatgagattttctcatcggtggtaaaacattgttttat 1323  Q
    ||||| ||||||  ||||| |||| || ||||||||| ||| |||  ||| ||||| |||||||||| || |||||| |||||||||||||||||| |||    
T  2396503 accaaggtataaggcaagacttgtagcaaagggttttactcaggtggaagggattt-attacaatgaaatcttctcaccggtggtaaaacattgttctat 2396405  T
Q  1324 aagggtacttatgaagattgttaa 1347  Q
    |||||||||||||  |||||||||    
T  2396404 aagggtacttatggcgattgttaa 2396381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 1452 - 1523
Target Start/End: Complemental strand, 5316877 - 5316806
Alignment:
Q  1452 tacagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||||| |||||| ||||||||| |  |  |||||||||||||||||||||||||||||||||    
T  5316877 tacagggccgtccctgagaatttggaggctcgaccttaggaatgaaaagaggtcagtgataaaatcaaaacg 5316806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 1468 - 1523
Target Start/End: Complemental strand, 34247208 - 34247153
Alignment:
Q  1468 agaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||||||||||||  |||||||| |||||||||||||||||||||||    
T  34247208 agaattcggaggctcggctctggaaatgaaaaaaggtcagtgataaaatcaaaacg 34247153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Original strand, 9524714 - 9524783
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    ||||||||||||| || || ||| |||||||||||||||||| ||||||||||||||||  |||||||||    
T  9524714 ttgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgttaa 9524783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 23185622 - 23185553
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||| ||| ||||||||||||||||||||   || |||||||||| |||||||||||||||||||    
T  23185622 cagggccgttcctgagaattcggaggctcggctcgaggattgaaaagaggccagtgataaaatcaaaacg 23185553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1454 - 1514
Target Start/End: Original strand, 1366797 - 1366857
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaa 1514  Q
    |||||||||| ||| ||||| |||||||| |||||| ||||||||||||| ||||||||||    
T  1366797 cagggccgtctctacgaatttggaggctcagctctgggaatgaaaagaggccagtgataaa 1366857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1454 - 1522
Target Start/End: Original strand, 4971536 - 4971604
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    |||||| |||||| ||||||| ||||||||| || | ||||||||||||  ||||||||||||||||||    
T  4971536 cagggctgtccctgagaattctgaggctcggttcggggaatgaaaagagaccagtgataaaatcaaaac 4971604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 36295363 - 36295409
Alignment:
Q  255 aagagtatgagttcatattttgaaaaataaaagtgacacctttaaaa 301  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||||||    
T  36295363 aagagtatgagttcacattttaaaacataaaagtgacacctttaaaa 36295409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1465 - 1522
Target Start/End: Complemental strand, 44895832 - 44895775
Alignment:
Q  1465 ctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    |||| |||||||||| |||| |||| ||||||||||||||| |||| |||||||||||    
T  44895832 ctaaaaattcggaggttcggttctgggaatgaaaagaggtcggtgaaaaaatcaaaac 44895775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 1283 - 1383
Target Start/End: Original strand, 47701993 - 47702093
Alignment:
Q  1283 tacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaatcagtacaatcttgaaatggaattaatgaatgtga 1382  Q
    ||||||||||| |||||| ||||||| ||||||||||  |||||| ||||||||   ||||| ||||| | |||||||||  |||||  |||| ||||||    
T  47701993 tacaatgagatcttctcaccggtggtgaaacattgttccataaggatacttatggctattgtgaatcaattcaatcttgagttggaacaaatggatgtga 47702092  T
Q  1383 a 1383  Q
    |    
T  47702093 a 47702093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 62; Significance: 5e-26; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 62; E-Value: 5e-26
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 1527 - 1458
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1527 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggtcagtgataaaatcaaaacg 1458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 5e-26; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 5e-26
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 27788608 - 27788677
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  27788608 cagggccgtccctaagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 27788677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 1453 - 1523
Target Start/End: Complemental strand, 17354143 - 17354073
Alignment:
Q  1453 acagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||    
T  17354143 acagggccgtccctaagaattcggaggctcgactcttggaatgaaaagaggtcagtgataaaatcaaaacg 17354073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 3e-21
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 30832443 - 30832512
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||| |||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||    
T  30832443 cagggccgtccctgagaattcgaaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 30832512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1454 - 1522
Target Start/End: Original strand, 13727317 - 13727385
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    ||||||||||||| ||||||||||||||||||||||  |||||||||||| ||||||||||||||||||    
T  13727317 cagggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaac 13727385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1454 - 1522
Target Start/End: Complemental strand, 21280733 - 21280665
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    ||||||||||||| ||||||||||||||||||||||  |||||||||||| ||||||||||||||||||    
T  21280733 cagggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaac 21280665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 1453 - 1523
Target Start/End: Original strand, 24710913 - 24710983
Alignment:
Q  1453 acagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||| ||||||||||||||| |||| | |||||||||||||| ||||||||||||||||||    
T  24710913 acagggccgtccctgagaattcggaggctcagctcagggaatgaaaagaggttagtgataaaatcaaaacg 24710983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 7e-19
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 20711638 - 20711707
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||| ||||||| ||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  20711638 cagggacgtccctgagaattcggaggctcggttctgggaatgaaaagaggtcagtcataaaatcaaaacg 20711707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 7e-19
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 27314097 - 27314166
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||| | |||||||||||||| ||||| ||||||||||||| |||||||||||||||||||    
T  27314097 cagggccgtccctgaaaattcggaggctcgactctgggaatgaaaagaggccagtgataaaatcaaaacg 27314166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 1453 - 1523
Target Start/End: Original strand, 235142 - 235212
Alignment:
Q  1453 acagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||| || |||||||||||||||||| |||||| |||||||||||||||  |||||||||||||||||||    
T  235142 acaggaccatccctaagaattcggaggttcggctatgagaatgaaaagagaccagtgataaaatcaaaacg 235212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 1456 - 1521
Target Start/End: Original strand, 1155767 - 1155832
Alignment:
Q  1456 gggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaa 1521  Q
    ||||||||||||| |||| |||||||||| |||  |||||||||||||||||||||||||||||||    
T  1155767 gggccgtccctaaaaatttggaggctcggttctaggaatgaaaagaggtcagtgataaaatcaaaa 1155832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 1460 - 1513
Target Start/End: Complemental strand, 19987330 - 19987277
Alignment:
Q  1460 cgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataa 1513  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  19987330 cgtccctaagaattcggaggatcggctctcagaatgaaaagaggtcagtgataa 19987277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Complemental strand, 22348170 - 22348101
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    ||||||||||||| || || ||| |||||||||||||||||| ||||||||||||||||| |||||||||    
T  22348170 ttgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatgacgattgttaa 22348101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 7e-16
Query Start/End: Original strand, 1454 - 1522
Target Start/End: Complemental strand, 21479683 - 21479615
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    |||||||||| || |||||| |||||||||||||||  |||||||||||| ||||||||||||||||||    
T  21479683 cagggccgtctctgagaatttggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaac 21479615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 1464 - 1523
Target Start/End: Complemental strand, 28075964 - 28075905
Alignment:
Q  1464 cctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||| ||||||||||||||| ||||||||||||| |||||| ||||||||||||    
T  28075964 cctaagaatttggaggctcggctctgggaatgaaaagaggccagtgaaaaaatcaaaacg 28075905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 1455 - 1522
Target Start/End: Complemental strand, 33774305 - 33774238
Alignment:
Q  1455 agggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    |||||| ||| | ||||||||||||||||||||||| |||||||||||| |||| |||||||||||||    
T  33774305 agggccatccttgagaattcggaggctcggctctgaaaatgaaaagaggccagtaataaaatcaaaac 33774238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Original strand, 13881725 - 13881794
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    ||||||||||||| || || ||| |||||||||||||||||| ||||||||||||||||  |||||||||    
T  13881725 ttgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgttaa 13881794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Complemental strand, 17692047 - 17691978
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    ||||||||||||| || || ||| |||||||||||||||||| ||||||||||||||||  |||||||||    
T  17692047 ttgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgttaa 17691978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Original strand, 25944655 - 25944724
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    ||||||||||||| || || ||| |||||||||||||||||| ||||||||||||||||  |||||||||    
T  25944655 ttgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgttaa 25944724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Complemental strand, 35203258 - 35203189
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    ||||||||||||| || || ||| |||||||||||||||||| ||||||||||||||||  |||||||||    
T  35203258 ttgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgttaa 35203189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 33332804 - 33332862
Alignment:
Q  132 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 190  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||| ||||||||||||    
T  33332804 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcagatctttggggtc 33332862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 35204462 - 35204414
Alignment:
Q  142 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 190  Q
    ||||| ||||||||||||||||||||||||| |||  ||||||||||||    
T  35204462 cataaatctagtagaccttttgagtatgttcattcggatctttggggtc 35204414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1454 - 1521
Target Start/End: Original strand, 19737612 - 19737678
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaa 1521  Q
    ||||| ||||||| |||||| | ||| |||||||| || ||||||||||| |||||||||||||||||    
T  19737612 cagggtcgtccctgagaatttgaaggttcggctct-aggatgaaaagaggccagtgataaaatcaaaa 19737678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1454 - 1488
Target Start/End: Original strand, 12083030 - 12083064
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctct 1488  Q
    |||||||||||||||| ||||||||||||||||||    
T  12083030 cagggccgtccctaagtattcggaggctcggctct 12083064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 14739301 - 14739358
Alignment:
Q  133 agtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 190  Q
    |||| ||| ||| |||||||||| |||||||||||||| | |||| ||||||||||||    
T  14739301 agtggcatgcatcattctagtaggccttttgagtatgtgcattcagatctttggggtc 14739358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1283 - 1336
Target Start/End: Original strand, 24434270 - 24434323
Alignment:
Q  1283 tacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatg 1336  Q
    ||||||||||| |||||| ||||||| ||||||||||  |||||| ||||||||    
T  24434270 tacaatgagatattctcaccggtggtgaaacattgttccataaggatacttatg 24434323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 5e-26; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 5e-26
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 16799240 - 16799309
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  16799240 cagggccgtccctaagaattcggaggctcggctctgggaatgaaaagatgtcagtgataaaatcaaaacg 16799309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 5e-26
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 27079197 - 27079128
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27079197 cagggccgtccctgagaattcggaggctcggctctgagaatgaaaagaggccagtgataaaatcaaaacg 27079128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 5e-26
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 36187795 - 36187864
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36187795 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggtcagtgataaaatcaaaacg 36187864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 5e-26
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 38869279 - 38869348
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  38869279 cagggccgtccctaagaattcggaggctcggctctgggaatgaaaagaggtcagttataaaatcaaaacg 38869348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 1453 - 1523
Target Start/End: Complemental strand, 7671119 - 7671049
Alignment:
Q  1453 acagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  7671119 acagggccgtccttaagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 7671049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 16198709 - 16198778
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  16198709 cagggccttccctaagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 16198778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 1454 - 1522
Target Start/End: Original strand, 15480006 - 15480074
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  15480006 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaac 15480074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 3e-21
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 22986473 - 22986542
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||| | ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  22986473 cagggccgtccgtgagaattcggaggctcagctctgagaatgaaaagaggccagtgataaaatcaaaacg 22986542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1455 - 1523
Target Start/End: Original strand, 28822253 - 28822321
Alignment:
Q  1455 agggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||||||||||||||| |||||| || |||||||||||||| ||||||||||||||||||    
T  28822253 agggccgtccctaagaattcggaggttcggctttgggaatgaaaagaggttagtgataaaatcaaaacg 28822321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 7e-19
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 9364476 - 9364407
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||  |||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||    
T  9364476 cagggccacccctaagaattcggaggctcagctctgggaatgaaaagaggccagtgataaaatcaaaacg 9364407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 7e-19
Query Start/End: Original strand, 1458 - 1523
Target Start/End: Complemental strand, 19523380 - 19523315
Alignment:
Q  1458 gccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||  |||||||||||||||||||    
T  19523380 gccgtccctgagaattcggaggctcggctctgggaatgaaaagagaccagtgataaaatcaaaacg 19523315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 7e-19
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 27924267 - 27924198
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||  |||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||    
T  27924267 cagggccgtttctaagaattcgggggctcgactctgagaatgaaaagaggccagtgataaaatcaaaacg 27924198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 7e-19
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 31194528 - 31194597
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||| | |||||||||||||||||||| ||||||||||||  |||||||||||||||||||    
T  31194528 cagggccgtccctgaaaattcggaggctcggctctgggaatgaaaagagaccagtgataaaatcaaaacg 31194597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 7e-19
Query Start/End: Original strand, 1462 - 1519
Target Start/End: Original strand, 40389461 - 40389518
Alignment:
Q  1462 tccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaa 1519  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  40389461 tccctaagaattcggaggctcggctctgggaatgaaaagatgtcagtgataaaatcaa 40389518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 1459 - 1523
Target Start/End: Complemental strand, 2275070 - 2275006
Alignment:
Q  1459 ccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||| ||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||    
T  2275070 ccgtccctgagaattcggaggctcggttctgggaatgaaaagaggccagtgataaaatcaaaacg 2275006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 1454 - 1522
Target Start/End: Original strand, 16591990 - 16592058
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    ||||||||||| | |||||| ||||||||||||||||||||||||||||| || |||||||||||||||    
T  16591990 cagggccgtccttgagaatttggaggctcggctctgagaatgaaaagaggccaatgataaaatcaaaac 16592058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 7e-16
Query Start/End: Original strand, 1462 - 1522
Target Start/End: Original strand, 34756289 - 34756349
Alignment:
Q  1462 tccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    ||||| ||||||||||||||||||||||  |||||||||||| ||||||||||||||||||    
T  34756289 tccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaac 34756349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 31881348 - 31881417
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||| | ||||  |||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  31881348 cagggccgtccctgaaaatttagaggctcggctctgggaatgaaaagtggtcagtaataaaatcaaaacg 31881417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1457 - 1523
Target Start/End: Complemental strand, 30854511 - 30854445
Alignment:
Q  1457 ggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||| | |||| ||||||||||||||| ||||||||| ||||||| |||||||| ||||||    
T  30854511 ggccgtccctgataatttggaggctcggctctgggaatgaaaaaaggtcagcgataaaattaaaacg 30854445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 23283943 - 23284012
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||| ||||||| ||||||| | | |  ||||||||||||| |||||||||||||||||||    
T  23283943 cagggccgtccctgagaattcagaggctcagttttaggaatgaaaagaggccagtgataaaatcaaaacg 23284012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Original strand, 25450743 - 25450812
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    |||||||||| || || || ||| |||||||||||||||||| ||||||||||||||||  |||||||||    
T  25450743 ttgattacaacgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgttaa 25450812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1468 - 1523
Target Start/End: Complemental strand, 7338170 - 7338115
Alignment:
Q  1468 agaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||| ||||||||||||||  ||||||||||||||||  |||||||||||||||    
T  7338170 agaatttggaggctcggctctaggaatgaaaagaggtcaaggataaaatcaaaacg 7338115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1173 - 1362
Target Start/End: Original strand, 24558430 - 24558619
Alignment:
Q  1173 ttggatgtaagtagatcttcaagaacaaagaaggtatttagagaattaaagaaccaaagtataaaacaagagttgtggctaagggtttttctcgggttaa 1272  Q
    ||||||| |||| |||||||||||| || |||||||||  | || || |||  || | ||| ||| ||||| ||||||| ||||||||  |||  ||  |    
T  24558430 ttggatgcaagtggatcttcaagaaaaaggaaggtattccgggagttgaaggtcctaggtacaaagcaagacttgtggccaagggtttcactcaagtgga 24558529  T
Q  1273 gagatttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaatcagtacaatcttga 1362  Q
    | |  |||| ||||||||||| |||||| ||||||| ||||||||||  |||||| ||||||||   ||||| ||||| | |||||||||    
T  24558530 ggggattgactacaatgagatcttctcaccggtggtgaaacattgttccataaggatacttatggctattgtgaatcaattcaatcttga 24558619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1173 - 1362
Target Start/End: Original strand, 24599462 - 24599651
Alignment:
Q  1173 ttggatgtaagtagatcttcaagaacaaagaaggtatttagagaattaaagaaccaaagtataaaacaagagttgtggctaagggtttttctcgggttaa 1272  Q
    ||||||| |||| |||||||||||| || |||||||||  | || || |||  || | ||| ||| ||||| ||||||| ||||||||  |||  ||  |    
T  24599462 ttggatgcaagtggatcttcaagaaaaaggaaggtattccgggagttgaaggtcctaggtacaaagcaagacttgtggccaagggtttcactcaagtgga 24599561  T
Q  1273 gagatttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaatcagtacaatcttga 1362  Q
    | |  |||| ||||||||||| |||||| ||||||| ||||||||||  |||||| ||||||||   ||||| ||||| | |||||||||    
T  24599562 ggggattgactacaatgagatcttctcaccggtggtgaaacattgttccataaggatacttatggctattgtgaatcaattcaatcttga 24599651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 24557452 - 24557495
Alignment:
Q  272 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatga 315  Q
    |||||||||| ||||||||||||||| | |||||||||||||||    
T  24557452 ttttgaaaaacaaaagtgacacctttgagaagtttaaggaatga 24557495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 24598484 - 24598527
Alignment:
Q  272 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatga 315  Q
    |||||||||| ||||||||||||||| | |||||||||||||||    
T  24598484 ttttgaaaaacaaaagtgacacctttgagaagtttaaggaatga 24598527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 27448042 - 27448000
Alignment:
Q  272 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatg 314  Q
    |||||||||| ||||||||||||||| |||||||||| |||||    
T  27448042 ttttgaaaaacaaaagtgacacctttgaaaagtttaaagaatg 27448000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 31398720 - 31398778
Alignment:
Q  132 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 190  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  31398720 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 31398778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 43595340 - 43595298
Alignment:
Q  272 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatg 314  Q
    |||||||||| ||||||||||||||| |||||||||| |||||    
T  43595340 ttttgaaaaacaaaagtgacacctttgaaaagtttaaagaatg 43595298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 43628134 - 43628092
Alignment:
Q  272 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaatg 314  Q
    |||||||||| ||||||||||||||| |||||||||| |||||    
T  43628134 ttttgaaaaacaaaagtgacacctttgaaaagtttaaagaatg 43628092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 5e-26; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 5e-26
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 47467872 - 47467803
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  47467872 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggtcagtgataaaatcaaaacg 47467803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 5e-26
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 50939152 - 50939221
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  50939152 cagggccgtccctaagaattcgggggctcggctctgagaatgaaaagaggccagtgataaaatcaaaacg 50939221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 7e-25
Query Start/End: Original strand, 1452 - 1523
Target Start/End: Original strand, 48720427 - 48720498
Alignment:
Q  1452 tacagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  48720427 tacagggccgtccctaagaattgggaggctcggctctgggaatgaaaagaggtaagtgataaaatcaaaacg 48720498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 1453 - 1523
Target Start/End: Original strand, 34290553 - 34290623
Alignment:
Q  1453 acagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  34290553 acagggccgtccttaagaattcggaggctcggctctgggaatgaaaagaagtcagtgataaaatcaaaacg 34290623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 8073257 - 8073326
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  8073257 cagggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggtcagtgataaaatcaaaacg 8073326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 1458 - 1523
Target Start/End: Complemental strand, 37168551 - 37168486
Alignment:
Q  1458 gccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  37168551 gccgtccctaagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 37168486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Original strand, 54407073 - 54407142
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||    
T  54407073 cagggccgtccctaagaattcggaggctcggctctgggaatgaaaagaggccggtgataaaatcaaaacg 54407142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 7e-22
Query Start/End: Original strand, 1454 - 1516
Target Start/End: Original strand, 29620364 - 29620426
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaat 1516  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29620364 cagggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggtcagtgataaaat 29620426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 3e-21
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 21582960 - 21582891
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||| ||||||||||||||||||| || ||||||||||||| |||||||||||||||||||    
T  21582960 cagggccgtccctgagaattcggaggctcggctttgggaatgaaaagaggccagtgataaaatcaaaacg 21582891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1454 - 1522
Target Start/End: Original strand, 27078486 - 27078554
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    ||||||||||||| |||||||||||||| |||||||  |||||||||||||||||||||||||||||||    
T  27078486 cagggccgtccctgagaattcggaggcttggctctggaaatgaaaagaggtcagtgataaaatcaaaac 27078554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1454 - 1522
Target Start/End: Original strand, 27084283 - 27084351
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    ||||||||||||| |||||||||||||| |||||||  |||||||||||||||||||||||||||||||    
T  27084283 cagggccgtccctgagaattcggaggcttggctctggaaatgaaaagaggtcagtgataaaatcaaaac 27084351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1454 - 1522
Target Start/End: Original strand, 38681011 - 38681079
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    ||||||||||||| ||||||||||||||||||||||  |||||||||||| ||||||||||||||||||    
T  38681011 cagggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaac 38681079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 1453 - 1523
Target Start/End: Original strand, 43207156 - 43207226
Alignment:
Q  1453 acagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||| | ||||||    
T  43207156 acagggccgtccctaagaatttggaggctcggctctgggaatgaaaagaggccagtgataaattaaaaacg 43207226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 7e-19
Query Start/End: Original strand, 1453 - 1522
Target Start/End: Original strand, 36715941 - 36716010
Alignment:
Q  1453 acagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||| |||||||||||| |||||    
T  36715941 acagggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaataaaaac 36716010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 7e-19
Query Start/End: Original strand, 1458 - 1523
Target Start/End: Complemental strand, 44708660 - 44708595
Alignment:
Q  1458 gccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||||||||||||||  ||||| ||||||||||||| |||||||||||||||||||    
T  44708660 gccgtccctaagaattcggaggctcaactctgggaatgaaaagaggccagtgataaaatcaaaacg 44708595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 1454 - 1522
Target Start/End: Original strand, 50258542 - 50258610
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    ||||||||| ||| |||||||||||||||||||||| ||| |||||||| |||||||||||||||||||    
T  50258542 cagggccgttcctgagaattcggaggctcggctctgggaacgaaaagagatcagtgataaaatcaaaac 50258610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 1457 - 1523
Target Start/End: Complemental strand, 36606149 - 36606083
Alignment:
Q  1457 ggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||| | |||||||||| |||||||||  ||||||||||||||||||||||||||||||||    
T  36606149 ggccgtccctgaaaattcggaggttcggctctggaaatgaaaagaggtcagtgataaaatcaaaacg 36606083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 7e-16
Query Start/End: Original strand, 1454 - 1522
Target Start/End: Original strand, 53506802 - 53506869
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    ||||||||||| |||||||||| ||||||||||||| ||||||| ||||| ||||||||||||||||||    
T  53506802 cagggccgtcc-taagaattcgaaggctcggctctgggaatgaagagaggccagtgataaaatcaaaac 53506869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 7e-16
Query Start/End: Original strand, 1454 - 1522
Target Start/End: Original strand, 54619121 - 54619189
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    ||||||||||||| ||||||||||||||||||||||  |||||||||| | || |||||||||||||||    
T  54619121 cagggccgtccctgagaattcggaggctcggctctggaaatgaaaagaagccaatgataaaatcaaaac 54619189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 1468 - 1523
Target Start/End: Complemental strand, 18372656 - 18372601
Alignment:
Q  1468 agaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  18372656 agaattcggaggctcgacactgggaatgaaaagaggtcagtgataaaatcaaaacg 18372601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 1460 - 1522
Target Start/End: Complemental strand, 48157310 - 48157248
Alignment:
Q  1460 cgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaac 1522  Q
    ||||||||||||||||||||||||| || | |||| |||||||| ||||||||||||||||||    
T  48157310 cgtccctaagaattcggaggctcggttccgggaataaaaagaggccagtgataaaatcaaaac 48157248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Complemental strand, 10096001 - 10095932
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    ||||||||||||| || || ||| |||||||||||||||||| ||||||||||||||||  |||||||||    
T  10096001 ttgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgttaa 10095932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Complemental strand, 10202887 - 10202818
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    ||||||||||||| || || ||| |||||||||||||||||| ||||||||||||||||  |||||||||    
T  10202887 ttgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgttaa 10202818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Original strand, 10899995 - 10900064
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    ||||||||||||| || || ||| |||||||||||||||||| ||||||||||||||||  |||||||||    
T  10899995 ttgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgttaa 10900064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 40771387 - 40771336
Alignment:
Q  258 agtatgagttcatattttgaaaaataaaagtgacacctttaaaaagtttaag 309  Q
    |||||||||||||||||||||| ||||||||||||| ||| |||||||||||    
T  40771387 agtatgagttcatattttgaaacataaaagtgacacatttgaaaagtttaag 40771336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 1454 - 1521
Target Start/End: Complemental strand, 42098989 - 42098922
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaa 1521  Q
    ||||||||||||| |||||||| |||||| |||| |  |||||||||||| |||||||||||||||||    
T  42098989 cagggccgtccctgagaattcgaaggctcagctcgggaaatgaaaagaggccagtgataaaatcaaaa 42098922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1455 - 1521
Target Start/End: Original strand, 3953816 - 3953882
Alignment:
Q  1455 agggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaa 1521  Q
    |||||||||||| |||||||||||| || ||||||  |||||||||||| |||||||||||| ||||    
T  3953816 agggccgtccctgagaattcggaggttccgctctggaaatgaaaagaggccagtgataaaattaaaa 3953882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1278 - 1336
Target Start/End: Complemental strand, 10609968 - 10609910
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatg 1336  Q
    ||||||||||||| || || ||| |||||||||||||||||| ||||||||||||||||    
T  10609968 ttgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatg 10609910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1278 - 1348
Target Start/End: Complemental strand, 47880084 - 47880014
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaat 1348  Q
    ||||||||||||| || || ||| || ||||||||||||||| ||||||||||||||||  ||||||||||    
T  47880084 ttgattacaatgaaatcttttcaccgatggtaaaacattgttctataagggtacttatggcgattgttaat 47880014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Original strand, 16460450 - 16460519
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    ||||||||||||| || || ||| |||| ||||||||||||| ||||||||||||||||  |||||||||    
T  16460450 ttgattacaatgaaatcttttcaccggtagtaaaacattgttctataagggtacttatggcgattgttaa 16460519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1278 - 1347
Target Start/End: Original strand, 54191494 - 54191563
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaa 1347  Q
    ||||||||||||| || || ||| ||||||| |||||||||| ||||||||||||||||  |||||||||    
T  54191494 ttgattacaatgaaatcttttcaccggtggtgaaacattgttctataagggtacttatggcgattgttaa 54191563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 1457 - 1523
Target Start/End: Original strand, 53149235 - 53149301
Alignment:
Q  1457 ggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||| || ||||||||||||||| | || | ||||||||||||  |||||||||||||||||||    
T  53149235 ggccgtctctgagaattcggaggctcagttcggggaatgaaaagagaccagtgataaaatcaaaacg 53149301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 22624378 - 22624330
Alignment:
Q  142 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 190  Q
    ||||| |||||||| |||||||||||||||| |||| ||||||||||||    
T  22624378 cataaatctagtaggccttttgagtatgttcattcagatctttggggtc 22624330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 8515453 - 8515395
Alignment:
Q  132 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 190  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  8515453 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 8515395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 32478699 - 32478641
Alignment:
Q  132 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 190  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  32478699 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 32478641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 2673949 - 2674006
Alignment:
Q  133 agtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 190  Q
    |||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  2673949 agtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 2674006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1490 - 1523
Target Start/End: Original strand, 9878642 - 9878675
Alignment:
Q  1490 agaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    |||||||||||||||||||||||||||| |||||    
T  9878642 agaatgaaaagaggtcagtgataaaatctaaacg 9878675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 54190290 - 54190339
Alignment:
Q  142 cataattctagtagaccttttgagtatgttcgttcaaatctttggggtct 191  Q
    ||||| |||||||| |||||||||||||||| |||  |||||||||||||    
T  54190290 cataaatctagtaggccttttgagtatgttcattcggatctttggggtct 54190339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 59; Significance: 3e-24; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 1453 - 1523
Target Start/End: Complemental strand, 106724 - 106654
Alignment:
Q  1453 acagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  106724 acagggccgtccctaagaatttggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 106654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 47; Significance: 4e-17; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 1278 - 1348
Target Start/End: Complemental strand, 338 - 268
Alignment:
Q  1278 ttgattacaatgagattttctcatcggtggtaaaacattgttttataagggtacttatgaagattgttaat 1348  Q
    ||||||||||||| ||||| ||| |||||||||||||||||| ||||||||||||||||  ||||||||||    
T  338 ttgattacaatgaaattttttcaccggtggtaaaacattgttctataagggtacttatggcgattgttaat 268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 46; Significance: 2e-16; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 1454 - 1523
Target Start/End: Complemental strand, 183244 - 183175
Alignment:
Q  1454 cagggccgtccctaagaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 1523  Q
    ||||||||||||| | ||||| |||||||||||||| ||||||||||||| |||||||||||| ||||||    
T  183244 cagggccgtccctgaaaattcagaggctcggctctgggaatgaaaagaggccagtgataaaattaaaacg 183175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0559 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0559
Description:

Target: scaffold0559; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1290 - 1336
Target Start/End: Original strand, 4835 - 4881
Alignment:
Q  1290 agattttctcatcggtggtaaaacattgttttataagggtacttatg 1336  Q
    ||||||||||| | ||| ||||||||||||| |||||||||||||||    
T  4835 agattttctcaccagtgttaaaacattgtttaataagggtacttatg 4881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 16037 - 16095
Alignment:
Q  132 aagtgacattcataattctagtagaccttttgagtatgttcgttcaaatctttggggtc 190  Q
    ||||| ||| ||| ||||||||||||||||||||||||| | |||  ||||||||||||    
T  16037 aagtggcatgcatcattctagtagaccttttgagtatgtgcattcggatctttggggtc 16095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 30; Significance: 0.0000006; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 35229 - 35188
Alignment:
Q  272 ttttgaaaaataaaagtgacacctttaaaaagtttaaggaat 313  Q
    |||| ||||| ||||||||||||||||| |||||||||||||    
T  35229 ttttaaaaaacaaaagtgacacctttaataagtttaaggaat 35188  T

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