View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9124_low_14 (Length: 226)
Name: NF9124_low_14
Description: NF9124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9124_low_14 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 2295325 - 2295555
Alignment:
| Q |
1 |
catttatctttttaaaaagtaggaatnnnnnnnttgagtaatcagaaaaattggtgaccaatcataattgtgaataaaaatagagcgaatagataaattg |
100 |
Q |
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| T |
2295325 |
catttatctttttaaaaagtaggaataaaaaaattgagtaatcagaaaaattggtgaccaatcataagtgtgaataaaaatagagcgaatagataaattg |
2295424 |
T |
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| Q |
101 |
at-ctcaaaattat-aaaaatctatcaaaatagtcattgannnnnnngccacaaattcttccataactcttgtggttataatttgt---nnnnnnnnnnc |
195 |
Q |
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| T |
2295425 |
atcctcaaaattataaaaaatctatcaaaatagtcattgatttttttgccacaaattctttcataactcttgtggttataatttgtaaaaaaaaaaaaac |
2295524 |
T |
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| Q |
196 |
ttttgttggtataaggtaggaccagcattct |
226 |
Q |
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| T |
2295525 |
ttttgttggtataaggtaggaccagcattct |
2295555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 2311135 - 2311320
Alignment:
| Q |
1 |
catttatctttttaaaaagtaggaatnnnnnnnttgagtaatcagaaaaattggtgaccaatcataattgtgaataaaaatagagcgaatagataaattg |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2311135 |
catttatctttttaaaaagtaggaataaaaaaattgagtaatcagaaaaattgatgaccaatcataagtgtgaataaaaatagagcgaatagataaattg |
2311234 |
T |
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| Q |
101 |
at-ctcaaaattataaaa-atctatcaaaatagtcattgannnnnnngccacaaattcttccataactcttgtggttataatttgt |
184 |
Q |
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| T |
2311235 |
atcctcaaaattataaaacatctatcaaaatagtcattgatttttttgccacaaattcttccataactcttgtggttataatttgt |
2311320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 226
Target Start/End: Original strand, 2311338 - 2311369
Alignment:
| Q |
195 |
cttttgttggtataaggtaggaccagcattct |
226 |
Q |
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| T |
2311338 |
cttttgttggtataaggtaggaccagcattct |
2311369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 2322532 - 2322586
Alignment:
| Q |
49 |
aattggtgaccaatcataattgtgaataaaaatagagcgaatagataaattgatc |
103 |
Q |
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||||||||||||||||| | ||||||||||||| || |||||||| |||||||| |
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| T |
2322532 |
aattggtgaccaatcatgagggtgaataaaaatatagtgaatagatgaattgatc |
2322586 |
T |
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