View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9124_low_3 (Length: 750)
Name: NF9124_low_3
Description: NF9124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9124_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 645; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 12 - 733
Target Start/End: Original strand, 38317988 - 38318727
Alignment:
| Q |
12 |
aacctgtggtcaattttattattaacctcttcaattgtgatatgtagacagagaaggcgacagagatgacttggatggaataatgaatgaaattgataat |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38317988 |
aaccagtggtcaattttattattaacctcttcaattgtgatatgtagacagagaaggcgacagagatgacttggatggaataatgaatgaaattgataat |
38318087 |
T |
|
| Q |
112 |
ggtgaaaaaatggtgcaagtgtgacaatgatggcggtgatgattgatttgcttgtagttatttaactttgatttatcatgtttgttttgactttatcttt |
211 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38318088 |
ggtgaaaaaatggtgcaagcgtgacaatgatggcggtgatgattgatttgcttgtagttatttaactttgatttatcatgtttgttttgactttatcttt |
38318187 |
T |
|
| Q |
212 |
taaattgttaggatatggtctggtctggtggacttaac-tttaatgttcgttattgtagacttgttttaacttgtaatatgtgga-----tctcttttat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38318188 |
taaattgttaggatatggtctggtctggtggacttaacttttaatgttcgttattgtagacttgttttaacttgtaatatgtggatttgttctcttttat |
38318287 |
T |
|
| Q |
306 |
caaatttggatctgtttgaaatcattccttatttttgtgtttattttgatcctggttttggttataccaatctccaaaccattactcccaagcaataaaa |
405 |
Q |
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| T |
38318288 |
caaatttggatctgtatgaaatcattccttatttttgtgtttattttgatcctggttttggttataccaatctccaaaccattactcccaagcaataaaa |
38318387 |
T |
|
| Q |
406 |
ttgattttg-ttttaacggtcaaccatttgtgtgaagtgtgaaatccaacaacactccaactactgaagaagaaagaatagtactttctagctgcagagc |
504 |
Q |
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| T |
38318388 |
ttgattttgcttttaacggtcaaccatttgtgtgaagtgtgaaatccaacaacactccaactactgaagtagaaagaatagtactttctagctgcagagc |
38318487 |
T |
|
| Q |
505 |
ttcaagaatacaattacaaggtttgttcaacatagcctatgcatgtattagaaattgaaacagtacaaagatttttggttgcaactc-taaactttaaag |
603 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38318488 |
ttcaagaatacaattacaaggtttgttcaacatagcctatgcatgtattagaaattgaaacagtacaaagatttttggttgcaactcttaaactttaaag |
38318587 |
T |
|
| Q |
604 |
gattttaactacttctagtggttttggcttctgagattaaaagtttccggtattgtcttgcaccttttttcacttgctgccaatgg----------tttc |
693 |
Q |
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| T |
38318588 |
gattttaactacttctagtggttttggcttctgagattaaaagtttccggtattgtcttgcaccttttttcacttgctgccaatggtggttgcctttttc |
38318687 |
T |
|
| Q |
694 |
attaaccttaactttcttgtccctgctatcctatctatct |
733 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
38318688 |
attaaccttaactttcttgtccctgctatcctatctatct |
38318727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 512 - 585
Target Start/End: Original strand, 38322631 - 38322700
Alignment:
| Q |
512 |
atacaattacaaggtttgttcaacatagcctatgcatgtattagaaattgaaacagtacaaagatttttggttg |
585 |
Q |
| |
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|||||||||||||||||||||||||| || | ||||| |||||||||||||||| || ||||||||||||| |
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| T |
38322631 |
atacaattacaaggtttgttcaacatggctt----atgtactagaaattgaaacagttcatagatttttggttg |
38322700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 38326930 - 38326971
Alignment:
| Q |
139 |
tgatggcggtgatgattgatttgcttgtagttatttaacttt |
180 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||| |
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| T |
38326930 |
tgatggtggtgatgattgatttgcttgtatttatttaacttt |
38326971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 38301485 - 38301553
Alignment:
| Q |
139 |
tgatggcggtgatgattgatttgcttgtagttatttaactttgatttatcatgtttgttttgactttat |
207 |
Q |
| |
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|||||| | |||||||||||||||||||| |||||||||||| ||||| |||| | ||||| |||||| |
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| T |
38301485 |
tgatggtgatgatgattgatttgcttgtatctatttaactttggtttataatgtgtcttttggctttat |
38301553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 38323024 - 38323075
Alignment:
| Q |
148 |
tgatgattgatttgcttgtagttatttaactttgatttatcatgtttgtttt |
199 |
Q |
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| T |
38323024 |
tgatgattgatttgcttgtatttacttaactttggtttatgatgtttttttt |
38323075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 38314594 - 38314671
Alignment:
| Q |
30 |
ttattaacctcttcaattgtgatatgtagacagagaaggcgacagagatgacttggatggaataatgaatgaaattga |
107 |
Q |
| |
|
||||||| |||||| ||| ||||||||||| |||||| |||| |||||||| || | |||||||||||||||||| |
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| T |
38314594 |
ttattaatctcttcgattatgatatgtagatggagaagacgacgacgatgactttgaagaaataatgaatgaaattga |
38314671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 575 - 612
Target Start/End: Original strand, 38315395 - 38315432
Alignment:
| Q |
575 |
atttttggttgcaactctaaactttaaaggattttaac |
612 |
Q |
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|||||||||||||| |||||||||||||| |||||||| |
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| T |
38315395 |
atttttggttgcaagtctaaactttaaagaattttaac |
38315432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 38849192 - 38849130
Alignment:
| Q |
138 |
atgatggcggtgatgattgatttgcttgtagttatttaactttgatttatcatgtttgttttg |
200 |
Q |
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|||||| || |||||||||||||||||||| ||||||||||||| |||||||||||| ||||| |
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| T |
38849192 |
atgatgtcgatgatgattgatttgcttgtatttatttaactttggtttatcatgtttattttg |
38849130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 505 - 627
Target Start/End: Complemental strand, 38848616 - 38848500
Alignment:
| Q |
505 |
ttcaagaatacaattacaaggtttgttcaacatagcctatgcatgtattagaaattgaaacagtacaaagatttttggttgcaactctaaactttaaagg |
604 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||| || ||||||||||||| || | ||||||||| |||||||||||||| | || |
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| T |
38848616 |
ttcaagaatacaattaaaaggtttgttcaacatagtctatg----tactagaaattgaaacttcccatacatttttggtcgcaactctaaacttcagag- |
38848522 |
T |
|
| Q |
605 |
attttaactacttctagtggttt |
627 |
Q |
| |
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||||||||| |||| ||||||| |
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|
| T |
38848521 |
-ttttaactatttctggtggttt |
38848500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 38849330 - 38849223
Alignment:
| Q |
23 |
aattttattattaacctcttcaattgtgatatgtagacagagaaggcgacagagatgacttggatggaataatgaatgaaattgataatggtgaaaaaat |
122 |
Q |
| |
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|||||| ||||||| ||||||||| ||||||||||| |||||| ||| || ||||| || | ||||| ||||||||||||||||| ||||||||| |
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| T |
38849330 |
aattttgttattaagttcttcaattatgatatgtagatggagaagacgatgacgacgactttgaagaaataaagaatgaaattgataatgatgaaaaaat |
38849231 |
T |
|
| Q |
123 |
ggtgcaag |
130 |
Q |
| |
|
|| ||||| |
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| T |
38849230 |
ggagcaag |
38849223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 373 - 414
Target Start/End: Complemental strand, 38848815 - 38848774
Alignment:
| Q |
373 |
caatctccaaaccattactcccaagcaataaaattgattttg |
414 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||||||| |
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|
| T |
38848815 |
caatatccaaaccattactcccaagcaataaacatgattttg |
38848774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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