View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9124_low_4 (Length: 690)

Name: NF9124_low_4
Description: NF9124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9124_low_4
NF9124_low_4
[»] chr7 (1 HSPs)
chr7 (18-682)||(47628428-47629093)


Alignment Details
Target: chr7 (Bit Score: 592; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 18 - 682
Target Start/End: Complemental strand, 47629093 - 47628428
Alignment:
Q  18 aagatcctcttacggaacttctcgtaaatcaattctcnnnnnnnccttcaaacaagaacaagtcactttcaccgcccctttctccgacgaaccacatgtc 117  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47629093 aagatcctcttacggaacttctcgtaaatcaattctcaaaaaaaccttcaaacaagaacaagtcactttcaccgcccctttctccgacgaaccacatgtc 47628994  T
Q  118 gccatcattggcggtggtatctctggtctcatttgcgctatcttcttagacaaacgcggcattcgctccaccgttttcgacactggtcttcatggtcttg 217  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47628993 gccatcattggcggtggtatctccggtctcatttgcgctatcttcttagacaaacgcggcattcgctccaccgttttcgacactggtcttcatggtcttg 47628894  T
Q  218 gaggaagattgggaacaaggcttattgatgatgaatatgattctttggtttttgaccatgctgctcagttttttactgtcaatgattctcgttttgctga 317  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47628893 gaggaagattgggaacaaggattattgatgatgaatatgattctttggtttttgaccatgctgctcagttttttactgtcaatgattctcgttttgctga 47628794  T
Q  318 aattgttaatgtttggttggataagggtttggttcgagaatggaagggtactgtaggagagttgaagaatggtggtgagtttcttccatttttaccctct 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47628793 aattgttaatgtttggttggataagggtttggttcgagaatggaagggtactgtaggagagttgaagaatggtggtgagtttcttccatttttaccctct 47628694  T
Q  418 cctccaagatatatagctactcgtggaatgcgctttctggctgattcgttactgtctcaggttagttgttcctaatattcattgttttcaacaattaaat 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  47628693 cctccaagatatatagctactcgtggaatgcgctttctggctgattcgttactgtctcaggttagttcttcctaatattcattgttttcaacaattaaat 47628594  T
Q  518 acttacaacctacaagtgtctcagaagtgtcctagaattaaagtgtgtcaaaacgagg-nnnnnnngttggttttgggacacttatggtacgagtgtcta 616  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  47628593 acttacaacctacaagtgtctcagaagtgtccaagaattaaattgtgtcaaaacgaggaaaataaagttggttttgggacacttatggtacgagtgtcta 47628494  T
Q  617 tgggtgtcggacactgacgcgcattggacaccgagacacgcctaatgtcagaggtgtctctgcttc 682  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  47628493 tgggtgtcggacactgacgcgcattggacaccgagacatgcctaatgtcagaggtgtctctgcttc 47628428  T

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