View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9124_low_6 (Length: 519)
Name: NF9124_low_6
Description: NF9124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9124_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Original strand, 11027018 - 11027518
Alignment:
| Q |
1 |
atagcaccaaattaagtaaatgctaaagtggaggagcttatcatatagatcttggggnnnnnnnnactcatagatgttaagttaattttcttgatgttga |
100 |
Q |
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| T |
11027018 |
atagcaccaaattaagtaaatgctaaagtggaggagcttatcatatagatcttggggttttttt-actcatagattttaagttaattttcttgatgttga |
11027116 |
T |
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| Q |
101 |
cattttgtactgcaaaggtttacccattttaaannnnnnnaaacagatgaacagccacagatcaccatcttacaccttccaacttcacaatccaaaatat |
200 |
Q |
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| T |
11027117 |
cattttgtactgcaaaggtttacc-attttaattttttttaaacaggtgaacagccacagatcaccagcttacaccttccaacttcacaatccaaaatat |
11027215 |
T |
|
| Q |
201 |
acaaatggaacctaattttgtcacaccatatactgttccaacaattcattaaaattatatcacatttcaaaacacttaaattatactatagcttctctcc |
300 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11027216 |
acaaatggaaccaaattttgtaacaccatatactgttccaacaattcattataattatatcacatatcaaaacacttaaattatactatagcttctctcc |
11027315 |
T |
|
| Q |
301 |
atgtgnnnnnnntcaccctgcttcctctcatgcacacatatataaaaactggaaccaaaccttatatataaaaaattaaccctagtaaa-tatcagttga |
399 |
Q |
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| T |
11027316 |
atgtgaaaaaa-tcaccctgcttcctctcatgcacacatatataaaaactggaaccaaaccttatatataaaaaattaaccctagtaaaatatcagttga |
11027414 |
T |
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| Q |
400 |
gatcattttgctgttctagacattcatggtaaagtaattacattcactggtatcatcactaaaacaatagagtaccaatgtaaaagaataacaaatgtga |
499 |
Q |
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| T |
11027415 |
gatcattttgttgttctagacattcttggtaaagtaattacattcactggtatcatcaataaaacaatagagtaccaatgtaaaagaataacaaatgtga |
11027514 |
T |
|
| Q |
500 |
gaga |
503 |
Q |
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|||| |
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| T |
11027515 |
gaga |
11027518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 431 - 497
Target Start/End: Original strand, 11042060 - 11042126
Alignment:
| Q |
431 |
aagtaattacattcactggtatcatcactaaaacaatagagtaccaatgtaaaagaataacaaatgt |
497 |
Q |
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| T |
11042060 |
aagtaattacattcactggtatcctcattaaaacaatggagtaccaacgtaaaagaataacaaatgt |
11042126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 497
Target Start/End: Original strand, 10993668 - 10993713
Alignment:
| Q |
452 |
tcatcactaaaacaatagagtaccaatgtaaaagaataacaaatgt |
497 |
Q |
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| T |
10993668 |
tcatcactaaaacagttgagtaccaatgcaaatgaataacaaatgt |
10993713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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