View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9124_low_7 (Length: 390)
Name: NF9124_low_7
Description: NF9124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9124_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 37890395 - 37890027
Alignment:
| Q |
1 |
cattgagtcggtaaccttttgtcaacttagtataaccaatcacttcacttttgtcattttatttataccttgaggttcatatgcgatgtataacttcgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37890395 |
cattgagtcggtaaccttttgtcaacttagtataaccaatcacttcacttttgtcattttatttataccttgaggttcatatgcgatgtataacttcgta |
37890296 |
T |
|
| Q |
101 |
taactaataatatttttgctatgtcaaatgtttttactaaaagtatcctatattttaacgatcatcatctatatatcttactattcataataagatttga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37890295 |
taactaataatatttttgctatgtcaaatgtttttactaaaagtatcctatattt-aacgatcatcatctatatatcttactattcataataagatttga |
37890197 |
T |
|
| Q |
201 |
ttcactaatagatcttctgactgattcatgatttgtaatctcaaatttacaactacgccggagaagagtttatttgacctttcgatgatcatgataatct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37890196 |
ttcactaatagatcttctgactgattcatgatttgtaatctcaaatttacaactacgccggagaagagtttattggacctttcgatgatcatgataatct |
37890097 |
T |
|
| Q |
301 |
catcaattgatatgatatgaggtaaatttagagaatattgatgcttttgtatcttaggatttaggatagataatt |
375 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37890096 |
catcaattgat-----atgaggtaaatttagagaatattgatgcttttgtatcttaggatttaggatagataatt |
37890027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 362
Target Start/End: Complemental strand, 37185268 - 37185196
Alignment:
| Q |
285 |
atgatcatgataatctcatcaattgatatgatatgaggtaaatttagagaatattgatgcttttgtatcttaggattt |
362 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| | |||||||||| |||||||||||||| ||| ||||| |
|
|
| T |
37185268 |
atgatcatgataatctcatcacttgatatga-----ggtagaattagagaatactgatgcttttgtatgttacgattt |
37185196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 37185373 - 37185327
Alignment:
| Q |
174 |
tatcttactattcataataagatttgattcactaatagatcttctga |
220 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||| ||||||| |||||| |
|
|
| T |
37185373 |
tatcttaccattcataataagattcgattcacaaatagatattctga |
37185327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University