View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9125_high_1 (Length: 781)
Name: NF9125_high_1
Description: NF9125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9125_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 11 - 417
Target Start/End: Complemental strand, 3625550 - 3625144
Alignment:
| Q |
11 |
tttggtggtcgatggatatgcggtttatgtgctgaggcagtgaaggaagaaagggcgaggtcggagagtgatgagaagatgatcacaattgatgaagctt |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3625550 |
tttggtggtcgatggatatgcggtttgtgtgctgaggcagtgaaggaagaaagggcgaggtcggagagtgatgagaagatgatcacaattgatgaagctt |
3625451 |
T |
|
| Q |
111 |
taatgcggcacaccaaatttcgccagcagttcagatcttctgcatctgatcataacaaagatttcatagttgctgtgaaacagattctttttaggacttt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3625450 |
taatgcggcacaccaaatttcgccagcagttcagatcttctgcatctgatcataacaaagatttcatagttgctgtgaaacagattctttttaggacttt |
3625351 |
T |
|
| Q |
211 |
ggattctcctaggagcaagccgagtaaggaacattctgcgtgcagacctcttggtagatctcatagttgcttctcaaaaatggaaacaactccgccgagg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3625350 |
ggattctcctaggagcaagccgagtaaggaacattctgcgtgcagacctcttggtagatctcatagttgcttctcaaaaatggaaacaactccgccgagg |
3625251 |
T |
|
| Q |
311 |
acgacagagacacatacagagtgattaagaatgaagtgaacattggtttattgcaaggcaagcattgttggttggtggtgtcaaggtttatttagaatta |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3625250 |
acgacagagacacatacagagtgattaagaatgaagtgaacattggtttattgcaaggcaagcattgttggttggtggtgtcaaggtttatttagaatta |
3625151 |
T |
|
| Q |
411 |
gttctta |
417 |
Q |
| |
|
||||||| |
|
|
| T |
3625150 |
gttctta |
3625144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 482 - 781
Target Start/End: Complemental strand, 3625079 - 3624782
Alignment:
| Q |
482 |
gcattggtgattgaatggatgatggttggagaaaagttttccatcccggacttcaatcacttggctgccatctcattttgattactagcaattgaatttt |
581 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3625079 |
gcattggtgattgaatggatgatggttggagaaaa-ttttccatcccggacttcaatcacttggctgcgatctcattttgattactagcaattgaatttt |
3624981 |
T |
|
| Q |
582 |
agtttttatatggttggaccaaattcaggttatgaaatttatttgaagcttttgtttggacataatgtttagtttggtttggtgaacaaatcgttgcatt |
681 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
3624980 |
aatttttatatggttggaccaaattcaggttatgaaatttatttgaagcttttgtttggacataatgtttagtttggtttggtggactaatcgttgcatt |
3624881 |
T |
|
| Q |
682 |
ctaccttcgatagtttgatctgaattgtttgattgaaatcggataactatgccattcatattgtgttgaaacagaaacagatccactctggtgggatttt |
781 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3624880 |
ctaccttcgatagtttgatctgaattgtttgattgaaatcggataactatgccattca-atagtgttgaaacagaaacagatccactccggtgggatttt |
3624782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University