View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9125_high_3 (Length: 441)
Name: NF9125_high_3
Description: NF9125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9125_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Original strand, 3624399 - 3624810
Alignment:
| Q |
18 |
aaaataaattctaataaatcaagcaaattcaagatgtatagaaggtacaagatgcaccataaataggcaactatgcaaaattatgcaggtatcacggtaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3624399 |
aaaataaattctaataaatcaagcaaattcaagatgtatagaaggtacaagatgcaccataaataggcaactatgcaaaattatgcaggtatcacggtaa |
3624498 |
T |
|
| Q |
118 |
ccagcaccagatcaacactaattcctgcaatttaacacgttacgatataataacgagaagtattaagtaaagaaatctctgtcgttagatgaagatcaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3624499 |
ccagcaccagatcaacactaattcctgcaatttaacacgttacgatataataacgagaagtattaagtaaagaaatctctgtcgttagatgaagatcaga |
3624598 |
T |
|
| Q |
218 |
tgttctaatttgactttattgcaactgacagaggttttttaactgtctgcagctgtgttaacgcggaaacagatcctcttccgcgtaaactttctgcagt |
317 |
Q |
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||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3624599 |
tgttctattttgactttattgcaactgac--aggttttttaactgtctgcagctgttttaacgcggaaacagatcctcttccgcgtaaactttctgcagt |
3624696 |
T |
|
| Q |
318 |
ggaatctcagccagccgtctattcataccgaatgcggtcagagagaactcaagggtggaggtatccattggacactctccagtaaaaaatcccaccagag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
3624697 |
ggaatctcagccagccgtctattcataccgaatgcggtcagagagaactcaagggtggaggtatccatcggacactctccagtaaaaaatcccaccggag |
3624796 |
T |
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| Q |
418 |
tggatctgtctctg |
431 |
Q |
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||||||||| |||| |
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| T |
3624797 |
tggatctgtttctg |
3624810 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 2069000 - 2068963
Alignment:
| Q |
18 |
aaaataaattctaataaatcaagcaaattcaagatgta |
55 |
Q |
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|||||||||| ||||||| ||||||||||||||||||| |
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| T |
2069000 |
aaaataaattgtaataaaccaagcaaattcaagatgta |
2068963 |
T |
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