View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9125_high_5 (Length: 373)
Name: NF9125_high_5
Description: NF9125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9125_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 27429306 - 27429644
Alignment:
| Q |
18 |
aactatctccatcaactttttgcttattgcactaaaccccacattcccactcaccccaaaacaacaaaacctgaaaacctcaccacattaatacagacac |
117 |
Q |
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| T |
27429306 |
aactatctccatcaactttttgcttattggactaaaccccacattcccactcaccccaaaacaacaaaacctgaaaacctcaccacattaatacagacac |
27429405 |
T |
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| Q |
118 |
ctttgttatttcatgcaatgaaacactgaacctatacacttataaccttatctcatacagtgactcatgttgttctcatatggtacaagtataatactac |
217 |
Q |
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| T |
27429406 |
ccttgttatttcatgcaatgaaacactgaacctatacacttataaccttatctcatacagtgactcatgttgttctcatatggtacaagtataataccac |
27429505 |
T |
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| Q |
218 |
ataatcactctgcacgttgcttttattattcgcaactacactttgcttttatcttaaagaagatattatttttccatcacaaacacaagcaaaatcacta |
317 |
Q |
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| T |
27429506 |
ataatcactctgcacgttgcttttattattcgcaactacactttgcttttatcttaaagaagacattatttttccatcacaaacacaagcaaaatcacta |
27429605 |
T |
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| Q |
318 |
tatatgacacattttttgttattgataaattatgtcaca |
356 |
Q |
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| T |
27429606 |
tatatgacacattttttgttattgataaattatgtcaca |
27429644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 27446785 - 27446841
Alignment:
| Q |
224 |
actctgcacgttgcttttattattcgcaac--tacactttgcttttatcttaaagaa |
278 |
Q |
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| T |
27446785 |
actctgcacgttgcttttattattcacaactatacacattgcttttattttaaagaa |
27446841 |
T |
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