View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9125_high_6 (Length: 347)
Name: NF9125_high_6
Description: NF9125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9125_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 166 - 333
Target Start/End: Original strand, 6330067 - 6330246
Alignment:
| Q |
166 |
ttgtacattactttttcagcactatcatctttttatcatgccatatcgcacta------------aaaccttggggtcattaattcattttttccaaact |
253 |
Q |
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| T |
6330067 |
ttgtacattactttttcagcactatcatctttttatcatgccatatcgcactactaggtttgcacaaaccttggggtcattaattcattttttccaaact |
6330166 |
T |
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| Q |
254 |
taaactaatgcatttcaatatcatatcacatgtattacacatacaagaggtaaacacatcttaagaacttcttattgatg |
333 |
Q |
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| T |
6330167 |
taaactaatgcatttcattatcatatcacatgtattacacatacaagaggtaaacacatcttaagaacttcttattgatg |
6330246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 6329854 - 6330020
Alignment:
| Q |
1 |
atcgatggcggaattttcatggaaatat--gtgctctacctaataatggtcagtgtaacaacttgaaggcaccatgatctctagtcatagtttaaaattg |
98 |
Q |
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| T |
6329854 |
atcgatggcggaattttcatggaaatatatgtgctctacctaat---ggtcagtgtaacaacttgaaggcaccatgatttctagtcatagtttaaaattg |
6329950 |
T |
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| Q |
99 |
tttgatgtaaaagactgaaactaaagcattaaggtaaaatataattcactttaactgttattactttttg |
168 |
Q |
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| T |
6329951 |
tttgatgtaaaaggtcgaaactaaagcattaaggtaaaatataattcactttaactgttattactttttg |
6330020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 333
Target Start/End: Original strand, 6319720 - 6319779
Alignment:
| Q |
274 |
tcatatcacatgtattacacatacaagaggtaaacacatcttaagaacttcttattgatg |
333 |
Q |
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| T |
6319720 |
tcatatcacatgtctaacacatacaagaggtacacacatcatgagtatttcttattgatg |
6319779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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