View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9125_low_10 (Length: 454)
Name: NF9125_low_10
Description: NF9125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9125_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 12 - 436
Target Start/End: Complemental strand, 45390967 - 45390543
Alignment:
| Q |
12 |
tggtgttgacaacaacggcaatggataagagaaagagcaacttccaatggtgtcgtagaaacagaactctgaatctcgccatattcaccaactctgaatc |
111 |
Q |
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| T |
45390967 |
tggtgttgacaacaacggcaatggataagagaaagagcaacttccaatggtgtcgtagaaacagaactctgaatctcgccatattcaccaactctgaatc |
45390868 |
T |
|
| Q |
112 |
tcgcctctaagtggaatttttctttattagattttttctgttctttacactcctgtatataagtatattttacgatatacattctatgtcatcttttaag |
211 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
45390867 |
tcgcctctaagtggaatttttctttattggattttttctgttctttacactcctgtatataagtatatttttcgatatacattctctgtcatcttttaag |
45390768 |
T |
|
| Q |
212 |
taatattggtcttgtgacttttatacatatcttttgatgcacttgtactagatcaatcatctgaaccttgtttcttgaaatacagtacaaatattttatg |
311 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45390767 |
taatattggtcttgtgactattatacatctcttttgatgcacttgtactagatcaatcatctgaaccttctttcttgaaatacagtacaaatattttatg |
45390668 |
T |
|
| Q |
312 |
ttttgattttaatctctattttaggagatatatcagattcatttagtgctatttatcttctaatgattgcttttatgattaagttatctccgatgggcta |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45390667 |
ttttgattttaatctctattttaggagatatatcagattcatttaggactatttatcttctaatgattgcttttatgattaaattatctccgatgggcta |
45390568 |
T |
|
| Q |
412 |
gcttctattgcactcatcctaagtg |
436 |
Q |
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||||||||||||||||||||||||| |
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| T |
45390567 |
gcttctattgcactcatcctaagtg |
45390543 |
T |
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