View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9125_low_13 (Length: 421)
Name: NF9125_low_13
Description: NF9125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9125_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 34612054 - 34612459
Alignment:
| Q |
1 |
aaaagaactcctatgtaaatcactagattacaagaagcatttacaagcagattgtgtgttgtctccataaaatcaaattacaagtaattgttggagatgg |
100 |
Q |
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| T |
34612054 |
aaaagaactcctatgtaaatcactagattacaagaagcatttacaagcagattgtgtgttgtctccataaaatcaaattacaagtaattgttggagatgg |
34612153 |
T |
|
| Q |
101 |
atttcttgaacctccaaggatgcttttttgggtgactgcataataataatcccactgatacatttgagattgaattggttgagcctccaaggatgcatta |
200 |
Q |
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| T |
34612154 |
atttcttgaacctccaaggatgcttttttgggtgactgcataataataatcccactgatacatttgagat-gaattggttgagcctccaaggatgcatta |
34612252 |
T |
|
| Q |
201 |
tttgaaagttgcttcaatgtggccactagtagttttgtataaatttataagtcatcaccaattcttcttctttattgatatggttgtctggtgctcccat |
300 |
Q |
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| T |
34612253 |
tttgaaagttgcttcaatgtggccactagtagttttgtataaatttataagtcatcaccaattcttcttctttattgatatggttgtctggtgctcccat |
34612352 |
T |
|
| Q |
301 |
actaactagtaaacatgtaaagtagtattcaaaatatccaccaaatcaattttatgatcatgctcatatttannnnnnnacacaatacatacattgaact |
400 |
Q |
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| T |
34612353 |
actaactagtaaacatgtaaagtagtattcaaaatatccaccaaatcaattttatgatcatgctcatatttatttttttacacaatacatacattgaact |
34612452 |
T |
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| Q |
401 |
ccatatt |
407 |
Q |
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| T |
34612453 |
ccatatt |
34612459 |
T |
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