View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9125_low_15 (Length: 416)

Name: NF9125_low_15
Description: NF9125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9125_low_15
NF9125_low_15
[»] chr2 (4 HSPs)
chr2 (56-380)||(28618625-28618952)
chr2 (312-380)||(28622936-28623004)
chr2 (312-380)||(28623910-28623978)
chr2 (58-112)||(7247397-7247451)
[»] chr1 (4 HSPs)
chr1 (61-315)||(39222032-39222290)
chr1 (56-315)||(36613137-36613403)
chr1 (56-315)||(7675042-7675307)
chr1 (316-379)||(48974804-48974865)
[»] chr5 (5 HSPs)
chr5 (56-315)||(25523360-25523626)
chr5 (57-183)||(7312268-7312394)
chr5 (254-315)||(32639935-32639996)
chr5 (111-152)||(13608659-13608700)
chr5 (111-152)||(21765746-21765787)
[»] chr4 (2 HSPs)
chr4 (56-315)||(8156320-8156586)
chr4 (141-196)||(12129966-12130021)
[»] chr3 (2 HSPs)
chr3 (127-203)||(17776107-17776184)
chr3 (127-203)||(19077408-19077485)
[»] scaffold0018 (1 HSPs)
scaffold0018 (313-379)||(127549-127615)
[»] chr6 (1 HSPs)
chr6 (316-380)||(14649258-14649322)
[»] chr8 (1 HSPs)
chr8 (316-379)||(6764079-6764142)


Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 56 - 380
Target Start/End: Original strand, 28618625 - 28618952
Alignment:
Q  56 gtatggaatgaatgaattcttgtttagagaggaagagatagtctttgctgtgagtttgtggtgatttaaggaattttcgtggtgaaaaggagatttgaga 155  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  28618625 gtatggaatgaatgaattcttgtttatagaggaagagatagtctttgttgtaagtttgtggtgatttaaggaattttcatggtgaaaaggagatttgaga 28618724  T
Q  156 atgaaaatgaaattagggtcttgagttggtgaatctggaatgaagttaccaaag---gaagaagtgaaaagaatagatatgaaattaatggattttgggg 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||| ||||||||||||||    
T  28618725 atgaaaatgaaattagggtcttgagttggtgaatctggaatgaagttaccaaagaaagaagaagtgaaaagaatagatatgaaataaatggattttgggg 28618824  T
Q  253 tgggttgaaatcaagaggaagaagaacaagccattggaaggtggtgttagtgattggggttagaaagagagcgtcaaacccccaatatccataccacagg 352  Q
    |||||||||||||||| ||| ||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||| ||||    
T  28618825 tgggttgaaatcaagatgaataagaagaagccattggaaggtggtgttggtgactggggttagaaagagagcgtcaaacccccaatacccataccgcagg 28618924  T
Q  353 gggcgtatgggatatgcacgcttaacag 380  Q
    ||||||||||||||||||||||||||||    
T  28618925 gggcgtatgggatatgcacgcttaacag 28618952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 28623004 - 28622936
Alignment:
Q  312 ttagaaagagagcgtcaaacccccaatatccataccacagggggcgtatgggatatgcacgcttaacag 380  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||    
T  28623004 ttagaaagatagcgtcaaacccccaatacccataccgcagggggcgtatggtatatgcacgcttaacag 28622936  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 28623978 - 28623910
Alignment:
Q  312 ttagaaagagagcgtcaaacccccaatatccataccacagggggcgtatgggatatgcacgcttaacag 380  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||    
T  28623978 ttagaaagatagcgtcaaacccccaatacccataccgcagggggcgtatggtatatgcacgcttaacag 28623910  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 7247397 - 7247451
Alignment:
Q  58 atggaatgaatgaattcttgtttagagaggaagagatagtctttgctgtgagttt 112  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||    
T  7247397 atggaatggatgaattcttgtttagagaggaagagatagtctatgccgtgagttt 7247451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 61 - 315
Target Start/End: Original strand, 39222032 - 39222290
Alignment:
Q  61 gaatgaatgaattcttgtttagagaggaagagatagtctttgctgtgagtttgtggtgatttaaggaattttcgtggtgaaaaggagatttgagaatgaa 160  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| ||||||||| |||||||| |||||||    
T  39222032 gaatgaatgaattcttgtttagagaggaagagatagtcattgccgtgagtttgtggtggtttaaggaattttcatggtgaaaatgagatttgggaatgaa 39222131  T
Q  161 aatgaaattagggtcttgagttggtgaatctggaatgaagttaccaa---aggaagaagtgaaaagaatagatatgaaattaatggattttggggt-ggg 256  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||   | |||||||||||||||||||||||||||| ||||||||||||||| |||    
T  39222132 aatgaaatcagggtcttgagttggtgaatctggaatgaagttaccaaaagaagaagaagtgaaaagaatagatatgaaatgaatggattttggggtgggg 39222231  T
Q  257 ttgaaatcaagaggaagaagaacaagccattggaaggtggtgttagtgattggggttag 315  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||  |||||||||    
T  39222232 ttgaaatcaagaggaagaagaagaagccattggaaggtggtgttggtggctggggttag 39222290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 56 - 315
Target Start/End: Complemental strand, 36613403 - 36613137
Alignment:
Q  56 gtatggaatgaatgaattcttgtttagagaggaagagatagtctttgctgtgagtttgtggtgatttaaggaattttcgtggtgaaaaggagatttgaga 155  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||   |||||||||||||| |||||| ||||||| |||||||||||||||||||||    
T  36613403 gtatgaaatgaatgaattattgtttagagaggaagagatagtctttaacgtgagtttgtggtggtttaagaaattttcatggtgaaaaggagatttgaga 36613304  T
Q  156 atgaaaatgaaattagggtcttgagttggtgaatctggaa--------tgaagttaccaaag---gaagaagtgaaaagaatagatatgaaattaatgga 244  Q
    ||||||||||||||||| ||||||||||||||||||||||        ||||||||| ||||   ||||||||||||||||||||| |||||| ||||||    
T  36613303 atgaaaatgaaattaggctcttgagttggtgaatctggaatgggttgttgaagttacgaaaggaagaagaagtgaaaagaatagatctgaaatgaatgga 36613204  T
Q  245 ttttggggtgggttgaaatcaagaggaagaagaacaagccattggaaggtggtgttagtgattggggttag 315  Q
    ||| |    || |||||||||||||||||||||| ||||||||||||||||||||| |||  |||||||||    
T  36613203 tttag----ggattgaaatcaagaggaagaagaagaagccattggaaggtggtgttggtggctggggttag 36613137  T

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Target: chr1; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 56 - 315
Target Start/End: Original strand, 7675042 - 7675307
Alignment:
Q  56 gtatggaatgaatgaattcttgtttagagaggaagagatagtctttgctgtgagtttgtggtgatttaaggaattttcgtggtgaaaaggagatttgaga 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   | |||||||||||| |||||| ||||||| |||||||||||||||||||||    
T  7675042 gtatggaatgaatgaattcttgtttagagaggaagagatagtctttaacgcgagtttgtggtggtttaagaaattttcatggtgaaaaggagatttgaga 7675141  T
Q  156 atgaaaatgaaattagggtcttgagttggtgaatctggaa--------tgaagttaccaaag---gaagaagtgaaaagaatagatatgaaattaatgga 244  Q
    ||||||||||||||||| ||||||||||||||||||||||        ||||||||| ||||   ||||||||||||| ||||||| |||||| ||||||    
T  7675142 atgaaaatgaaattaggctcttgagttggtgaatctggaatgggttgttgaagttacgaaaggaagaagaagtgaaaa-aatagatctgaaatgaatgga 7675240  T
Q  245 ttttggggtgggttgaaatcaagaggaagaagaacaagccattggaaggtggtgttagtgattggggttag 315  Q
    ||| |    |  ||||||||||||||| |||||| ||||||||||||||||||||| |||  |||||||||    
T  7675241 tttag----gaattgaaatcaagaggaggaagaagaagccattggaaggtggtgttggtggctggggttag 7675307  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 379
Target Start/End: Complemental strand, 48974865 - 48974804
Alignment:
Q  316 aaagagagcgtcaaacccccaatatccataccacagggggcgtatgggatatgcacgcttaaca 379  Q
    |||||||||||||||||||||||| |||| || || ||||||||||||| ||||| ||||||||    
T  48974865 aaagagagcgtcaaacccccaatacccattccgca-ggggcgtatggga-atgcaagcttaaca 48974804  T

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Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 56 - 315
Target Start/End: Complemental strand, 25523626 - 25523360
Alignment:
Q  56 gtatggaatgaatgaattcttgtttagagaggaagagatagtctttgctgtgagtttgtggtgatttaaggaattttcgtggtgaaaaggagatttgaga 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||| |||||| ||||||| |||||||||||||||||||||    
T  25523626 gtatggaatgaatgaattcttgtttagagaggaagagatagtctttaacgtgagtttgtggtggtttaagaaattttcatggtgaaaaggagatttgaga 25523527  T
Q  156 atgaaaatgaaattagggtcttgagttggtgaatctggaa--------tgaagttaccaaag---gaagaagtgaaaagaatagatatgaaattaatgga 244  Q
    ||||||||||||||||| ||||||||||||||||||||||        ||||||||| ||||   ||||||||||||||||||||| |||||| ||||||    
T  25523526 atgaaaatgaaattaggctcttgagttggtgaatctggaatgggttgttgaagttacgaaaggaagaagaagtgaaaagaatagatctgaaatgaatgga 25523427  T
Q  245 ttttggggtgggttgaaatcaagaggaagaagaacaagccattggaaggtggtgttagtgattggggttag 315  Q
    ||| |    || |||||||||||||||||||||| ||||||||||||||||||||| |||  |||||||||    
T  25523426 tttag----ggattgaaatcaagaggaagaagaagaagccattggaaggtggtgttggtggctggggttag 25523360  T

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Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 57 - 183
Target Start/End: Original strand, 7312268 - 7312394
Alignment:
Q  57 tatggaatgaatgaattcttgtttagagaggaagagatagtctttgctgtgagtttgtggtgatttaaggaattttcgtggtgaaaaggagatttgagaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||| |||||||||||||||||  |||    
T  7312268 tatggaatgaatgaattcttgtttagagaggaagagatagtctttgtcgtgagtttgtggtggtttaaggaattttcatggtgaaaaggagatttaggaa 7312367  T
Q  157 tgaaaatgaaattagggtcttgagttg 183  Q
    |||||||||||||||||||||||||||    
T  7312368 tgaaaatgaaattagggtcttgagttg 7312394  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 315
Target Start/End: Complemental strand, 32639996 - 32639935
Alignment:
Q  254 gggttgaaatcaagaggaagaagaacaagccattggaaggtggtgttagtgattggggttag 315  Q
    ||||||||||||||||||||||||| ||||||||| |||||| |||| |||  |||||||||    
T  32639996 gggttgaaatcaagaggaagaagaagaagccattgaaaggtgatgttggtggctggggttag 32639935  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 13608659 - 13608700
Alignment:
Q  111 ttgtggtgatttaaggaattttcgtggtgaaaaggagatttg 152  Q
    ||||| |||||| |||||||||| ||||||||||||||||||    
T  13608659 ttgtgatgatttgaggaattttcatggtgaaaaggagatttg 13608700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 21765787 - 21765746
Alignment:
Q  111 ttgtggtgatttaaggaattttcgtggtgaaaaggagatttg 152  Q
    ||||| |||||| |||||||||| ||||||||||||||||||    
T  21765787 ttgtgatgatttgaggaattttcatggtgaaaaggagatttg 21765746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 56 - 315
Target Start/End: Original strand, 8156320 - 8156586
Alignment:
Q  56 gtatggaatgaatgaattcttgtttagagaggaagagatagtctttgctgtgagtttgtggtgatttaaggaattttcgtggtgaaaaggagatttgaga 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||| |||||| ||||||| |||||||||||||||||| ||    
T  8156320 gtatggaatgaatgaattcttgtttagagaggaagagatagtctttaacgtgagtttgtggtggtttaagaaattttcatggtgaaaaggagatttggga 8156419  T
Q  156 atgaaaatgaaattagggtcttgagttggtgaatctggaa--------tgaagttaccaaag---gaagaagtgaaaagaatagatatgaaattaatgga 244  Q
    ||||||||||||||||| ||||||||||||||||||||||        ||||||||||||||   ||||||||||||| ||||||| |||||| ||||||    
T  8156420 atgaaaatgaaattaggctcttgagttggtgaatctggaatgggttgttgaagttaccaaaggaagaagaagtgaaaataatagatctgaaatgaatgga 8156519  T
Q  245 ttttggggtgggttgaaatcaagaggaagaagaacaagccattggaaggtggtgttagtgattggggttag 315  Q
    |||||    |  |||||||||||||||||||||| ||||||||||||||||| ||| |||  |||||||||    
T  8156520 ttttg----gaattgaaatcaagaggaagaagaagaagccattggaaggtggggttggtggctggggttag 8156586  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 12130021 - 12129966
Alignment:
Q  141 aaaggagatttgagaatgaaaatgaaattagggtcttgagttggtgaatctggaat 196  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  12130021 aaaggagatttgataatgaaaatgaaattaggctcttgagttggtgaatctggaat 12129966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 17776184 - 17776107
Alignment:
Q  127 aattttcgtggtgaaaaggagatttgagaatgaaaatgaaattaggg-tcttgagttggtgaatctggaatgaagtta 203  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||    
T  17776184 aattttcatggtgaaaaggagatttgagaatgaaaatgaaattagggtttttgagttggtgaatctggaatggagtta 17776107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 19077485 - 19077408
Alignment:
Q  127 aattttcgtggtgaaaaggagatttgagaatgaaaatgaaattaggg-tcttgagttggtgaatctggaatgaagtta 203  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||    
T  19077485 aattttcatggtgaaaaggagatttgagaatgaaaatgaaattagggtttttgagttggtgaatctggaatggagtta 19077408  T

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Target: scaffold0018 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 379
Target Start/End: Complemental strand, 127615 - 127549
Alignment:
Q  313 tagaaagagagcgtcaaacccccaatatccataccacagggggcgtatgggatatgcacgcttaaca 379  Q
    |||||||||||||| |||||| ||||| ||||||| ||||||||||||||||||||| |||||||||    
T  127615 tagaaagagagcgttaaacccgcaatacccatacctcagggggcgtatgggatatgctcgcttaaca 127549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 380
Target Start/End: Complemental strand, 14649322 - 14649258
Alignment:
Q  316 aaagagagcgtcaaacccccaatatccataccacagggggcgtatgggatatgcacgcttaacag 380  Q
    ||||||||||| |||||| ||||| ||||||| |||||| |||||||||||||| ||||||||||    
T  14649322 aaagagagcgttaaaccctcaatacccatacctcaggggtcgtatgggatatgctcgcttaacag 14649258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 6764079 - 6764142
Alignment:
Q  316 aaagagagcgtcaaacccccaatatccataccacagggggcgtatgggatatgcacgcttaaca 379  Q
    ||||||||| | |||||  ||||| ||||||| |||||||||||||||||||||||||||||||    
T  6764079 aaagagagcattaaaccaacaatacccatacctcagggggcgtatgggatatgcacgcttaaca 6764142  T

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