View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9125_low_2 (Length: 1163)
Name: NF9125_low_2
Description: NF9125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9125_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 780; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 780; E-Value: 0
Query Start/End: Original strand, 296 - 1149
Target Start/End: Complemental strand, 16269942 - 16269079
Alignment:
| Q |
296 |
agttttaggtaactttttgtgcatttatttgcaaggttcatgttcttaactgggataattgtaatattgaggctggcacgctgactcagctatggtacaa |
395 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16269942 |
agttttaggtaactttttgtgcatttatttgcaaggttcatgttcttaactgggataattgtaatattgaggctggcacgctgactcagctatggtacaa |
16269843 |
T |
|
| Q |
396 |
gtcatgtgatctgaaaatttccgaaaaatgttgtgttaagaaaattaaactgttatggaaatgagaggaaatattgatttattggatttttgcaatcagt |
495 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16269842 |
gtcatgtgatccgaaaatttccgaaaaatgttgtgttaagaaaattaaactgttaaggaaatgagaggaaatattgatttattggatttttgcaatcagt |
16269743 |
T |
|
| Q |
496 |
gttatttgcttagttttctaatggaatattgatggaca----------ggctagaagggaaaagattagtgaaaggatgaaaactcttcaggatttagtc |
585 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16269742 |
gttattagcttagttttctaatggaatattgatggacactgatggacaggctagaagggaaaagattagtgaaaggatgaaaactcttcaggatttagtc |
16269643 |
T |
|
| Q |
586 |
cctggatgcaacaaggtatggttaacttagtgcctgttaagttttgtctttgttctcgccgcatttttatgtgtataaagtaaccaagaagaaaacaagc |
685 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16269642 |
cctggatgcaacaaggtatggttaacttagtgcctgttaagttttgtctctgctctcgccgcatttttatgtgtataaagtaaccaagaagaaaacaagc |
16269543 |
T |
|
| Q |
686 |
ataaagacagaagagtaaaatgtgttacttttcatatgaaaaagaaaagaacaaaatcatcagtgaatatttgtgtttgtaaatctctgataagatgatc |
785 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16269542 |
ataaagacagaagagtaaaatgtgttacttttcatatgaaatagaaaagaacaaaatcatcagtgaatatttgtgtttgtaaatctctgataagatgatc |
16269443 |
T |
|
| Q |
786 |
tgaaaatattccttatggctggtttatttannnnnnnattcaggttattgggaaagcattggtccttgatgagataatcaattatatccaatcactccat |
885 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16269442 |
tgaaaatattccttatggctggtttatttatttttttattcaggttattgggaaagcattggtccttgatgagataatcaattatatccaatcactccat |
16269343 |
T |
|
| Q |
886 |
caccaagtagaggtgtgaattatttatctgtcattctttgtgaaaataatataatgctttatagtttatttctgagtctttaaattttactttacatgta |
985 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16269342 |
caccaagtagaggtgtgaattatttatctgtcattctttgtgaaaataatataatgctttatagtttatttctgagtctttaaattttactttacatgta |
16269243 |
T |
|
| Q |
986 |
cagtttttgtcgatgaagcttgaagcagtaaattcaagaccgacacctggtatggaagtatttcctcctaaaactgtaagtatttaacagcatccttaca |
1085 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16269242 |
cagtttttgtcgatgaagcttgaagcagtaaattcaagaccgacacctggtatggaagtatttcctcctaaaactgtaagtatttaacagcatccttaca |
16269143 |
T |
|
| Q |
1086 |
tttttacattgaattctatatattctaaaatttggttttatccgctttattctatatgatgtcc |
1149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
16269142 |
tttttacattgaattctatatattctaaaatttggttttatccgctttattctatataatgtcc |
16269079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 299
Target Start/End: Complemental strand, 16270521 - 16270242
Alignment:
| Q |
20 |
taaaggagaagaaaacagttcaggaaagcatgcggaagaaactagtgatgagccacatcctaagaaagactacatccatgtccgagctagaaggggtcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16270521 |
taaaggagaagaaaacagttcaggaaagcatgcggaagaaactagtgatgagccacatcctaagaaagactacatccatgtccgagctagaaggggtcaa |
16270422 |
T |
|
| Q |
120 |
gctactgatagccacagtcttgcagaaagagtattttcctacttcctatttctcacaaagtgtatttttatagggtgttcaatttcttattttcaaataa |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16270421 |
gctactgatagccatagtcttgcagaaagagtattttcctacttcctatttctcacaaagtgtatttttatagggtgttcaatttcttattttcaaataa |
16270322 |
T |
|
| Q |
220 |
tattgatcctcaaagatattgcttgcttatgttgcttttgtcttttcgattttatgttttacaaattggccagtaaagtt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16270321 |
tattgatcctcaaagatattgcttgcttatgttgcttttgtcttttcgattttatgttttacaaattggccagtaaagtt |
16270242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 8e-24; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 26003068 - 26002999
Alignment:
| Q |
77 |
tcctaagaaagactacatccatgtccgagctagaaggggtcaagctactgatagccacagtcttgcagaa |
146 |
Q |
| |
|
||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26003068 |
tcctaagcaagattacatccatgttcgagctagaaggggtcaagctactgatagccacagtcttgcagaa |
26002999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 827 - 899
Target Start/End: Complemental strand, 26002386 - 26002314
Alignment:
| Q |
827 |
aggttattgggaaagcattggtccttgatgagataatcaattatatccaatcactccatcaccaagtagaggt |
899 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| |||||||| |||||||| || | |||||| ||||| |
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|
| T |
26002386 |
aggttattgggaaagcattggtgcttgatgagataattaattatattcaatcacttcagcgccaagtggaggt |
26002314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 531 - 603
Target Start/End: Complemental strand, 26002684 - 26002612
Alignment:
| Q |
531 |
acaggctagaagggaaaagattagtgaaaggatgaaaactcttcaggatttagtccctggatgcaacaaggta |
603 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| || || |||||| |
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|
| T |
26002684 |
acaggccagaagggaaaagattagtgaaaggatgaaaattctacaggatttagttcctggttgtaataaggta |
26002612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 3451186 - 3451254
Alignment:
| Q |
84 |
aaagactacatccatgtccgagctagaaggggtcaagctactgatagccacagtcttgcagaaagagta |
152 |
Q |
| |
|
||||| ||||| |||||| |||| ||||| |||||||||||||| || ||||||||||||||| ||||| |
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|
| T |
3451186 |
aaagattacattcatgtcagagcaagaagaggtcaagctactgacagtcacagtcttgcagaacgagta |
3451254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 152
Target Start/End: Original strand, 18810331 - 18810393
Alignment:
| Q |
90 |
tacatccatgtccgagctagaaggggtcaagctactgatagccacagtcttgcagaaagagta |
152 |
Q |
| |
|
||||| |||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||| |
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|
| T |
18810331 |
tacattcatgtcagagcaagaagaggtcaagctactgatagccatagtcttgcagaaagagta |
18810393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 45175764 - 45175819
Alignment:
| Q |
93 |
atccatgtccgagctagaaggggtcaagctactgatagccacagtcttgcagaaag |
148 |
Q |
| |
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||||| |||||||| ||||||||||| || |||||||||||||| ||||| ||||| |
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|
| T |
45175764 |
atccacgtccgagcaagaaggggtcaggccactgatagccacagccttgctgaaag |
45175819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 31420787 - 31420837
Alignment:
| Q |
103 |
gagctagaaggggtcaagctactgatagccacagtcttgcagaaagagtat |
153 |
Q |
| |
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|||| ||||| ||||||||||||||||| |||||||| |||||||| |||| |
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|
| T |
31420787 |
gagcaagaagaggtcaagctactgatagtcacagtctagcagaaagggtat |
31420837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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