View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9125_low_21 (Length: 230)
Name: NF9125_low_21
Description: NF9125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9125_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 117; Significance: 9e-60; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 14335942 - 14335745
Alignment:
| Q |
22 |
ccgcgattattaggagaagggtagatttgcatgtaccacttaagtctttcatatcacaaatatgtnnnnnnnnnnnnnnnnn---attcatcaagtgatg |
118 |
Q |
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| T |
14335942 |
ccgcgattattaggagaagggtagatttgcttgtaccacttaagtctttcatatcacaaatatgtttcttcttcttcttcttcttattcatcaagtgatg |
14335843 |
T |
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| Q |
119 |
aaattgacctatgtaatgatgacacctaagaattcattcctttatgaccttgtgccaaatggagacgattaatagaaacttaccccggatcctctctg |
216 |
Q |
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| T |
14335842 |
aaattgacctatgtaatgatgacacctaagaattcattcctttatgaccttgtgacaaatggagacaattaatataaacttaccccggatcctctctg |
14335745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 104 - 216
Target Start/End: Complemental strand, 14331897 - 14331785
Alignment:
| Q |
104 |
attcatcaagtgatgaaattgacctatgtaatgatgacacctaagaattcattcctttatgaccttgtgccaaatggagacgattaatagaaacttaccc |
203 |
Q |
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| T |
14331897 |
attcatcaagtgatgaaattgacctatgtaatgatgacacctaagaattcattcctttatgaccttgtgacaaatggagacaattaatataaacttaccc |
14331798 |
T |
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| Q |
204 |
cggatcctctctg |
216 |
Q |
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| T |
14331797 |
cggatcctctctg |
14331785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 14331258 - 14331332
Alignment:
| Q |
113 |
gtgatgaaattgacctatgtaatgatgacac--ctaagaattcattcctttatgaccttgtgccaaatggagacg |
185 |
Q |
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| T |
14331258 |
gtgatgaaagtgacctctctaatgatgacacacctaagaagtcagtcctttatgaccttgtgacaaatggagacg |
14331332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 14335218 - 14335292
Alignment:
| Q |
113 |
gtgatgaaattgacctatgtaatgatgacac--ctaagaattcattcctttatgaccttgtgccaaatggagacg |
185 |
Q |
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| T |
14335218 |
gtgatgaaagtgacctctctaatgatgacacacctaagaagtcagtcctttatgaccttgtgacaaatggagacg |
14335292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 8671830 - 8671903
Alignment:
| Q |
113 |
gtgatgaaattgacctatgtaatgatgacac--ctaagaattcattcctttatgaccttgtgccaaatggagac |
184 |
Q |
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| T |
8671830 |
gtgatgaaagtgacctctctaatgatgacacacctaagaagtcagtcctttatgaccatatgacaaatggagac |
8671903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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