View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9125_low_6 (Length: 742)
Name: NF9125_low_6
Description: NF9125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9125_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 645; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 1 - 724
Target Start/End: Original strand, 2377534 - 2378259
Alignment:
| Q |
1 |
cttgaggaggagcagagaaggaagaaaactgtggaatctgttgtaatagtgaagaaatctcaactttctatgaatgaggctgaagactcttgtgcagaca |
100 |
Q |
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||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
2377534 |
cttgaggaggaacagaaaaggaagaaaactgtggaatctgttgtaatagtgaagaaatctcaactttctatgaatgaggctgaaga---tcgtgcagaca |
2377630 |
T |
|
| Q |
101 |
ctaataatagtacatatgatgagacattacctgaaattgaagcaagattttgtgaaagaagtgtcctcataagactacattgtttgaagagtcaaggagt |
200 |
Q |
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| T |
2377631 |
ctaataatagtacatatgatgagacattacctgaaattgaagcaagattttgtgaaagaagtgtcctcataagactacattgtttgaagagtcaaggagt |
2377730 |
T |
|
| Q |
201 |
tattgagaaaattatgagtgaaattgagaaacttcatctaaaagtcatcaatagcagttccttgacttttgggaatttcacccttgatataaccatcatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2377731 |
tattgagaaaattatgagtgaaattgagaaacttcatctaaaagtcatcaatagcagttccttgacttttgggaatttcacccttgatataaccatcatt |
2377830 |
T |
|
| Q |
301 |
gctcaggtaatttcactacaccgtcaccaaataataatcaatagaatatgtgactttaaaagtagttaggatgaaaactaaatatttttaatgatctcac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2377831 |
gctcaggtaatttcactacaccgtcaccaaataataatcaatagaatatgtgactttaaaagtagttaggatgaaaactaaatatttttaatgatctcac |
2377930 |
T |
|
| Q |
401 |
gattatgattgattgaatatggaannnnnnnnncccgcaatttgcagatggatgtgggattttgcatgacggtgaaggatcttgtgaggaagatacgttc |
500 |
Q |
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| T |
2377931 |
gattatgattgattgaatatggaa-ttttttttcccgcaatttgcagatggatgtgggattttgcatgacggtgaaggatcttgtgaggaagatacgttc |
2378029 |
T |
|
| Q |
501 |
agcatattcatctttcatgtgaacaaagtttcatgttttgttcactataaataaaaccataaagcagttaaattttatgctctttataagtaataatcat |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2378030 |
agcatattcatctttcatgtgaacaaagtttcatgttttgttcactataaataaaaccataaagcagttaaattttatgctctttataagtaataatcat |
2378129 |
T |
|
| Q |
601 |
g------tggtgggtatagtatgtcatttaatcattttcgaaaaatgtttgctctgaaggttcattttgcagaagggttttttagtcatatttttgcatg |
694 |
Q |
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| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2378130 |
gtttgcatggtgggtatagtatgtcattgaatcattttcgaaaaatgtttgctctgaaggttcattttgcagaagggttttttagtcatatttttgcatg |
2378229 |
T |
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| Q |
695 |
gtcaacttgttgactgtgttattttttatt |
724 |
Q |
| |
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| T |
2378230 |
gtcaacttgttgactgtgttattttttatt |
2378259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 437 - 488
Target Start/End: Complemental strand, 36766511 - 36766460
Alignment:
| Q |
437 |
gcaatttgcagatggatgtgggattttgcatgacggtgaaggatcttgtgag |
488 |
Q |
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| T |
36766511 |
gcaatttgcagatggatgtggaattttgcatgacagtgaaggatcttgtgag |
36766460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 311
Target Start/End: Complemental strand, 36766866 - 36766683
Alignment:
| Q |
128 |
tacctgaaattgaagcaagattttgtgaaagaagtgtcctcataagactacattgtttgaagagtcaaggagttattgagaaaattatgagtgaaattga |
227 |
Q |
| |
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|||| ||||||||||||||||||||||| |||| ||||||||||||| | |||||| ||| | |||||||| | || |||| || ||||||| |
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| T |
36766866 |
taccagaaattgaagcaagattttgtgatagaaatgtcctcataagagttcattgtgagaaaatcaaaggagttgtggaaaaaacaatccacaaaattga |
36766767 |
T |
|
| Q |
228 |
gaaacttcatctaaaagtcatcaatagcagttccttgacttttgggaatttcacccttgatataaccatcattgctcaggtaat |
311 |
Q |
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|||||| |||||||||||| ||||||||||| | |||| ||||| | || | ||||||||||| || ||||| |||||||| |
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| T |
36766766 |
gaaactcaatctaaaagtcaccaatagcagtttcatgacatttggaagttgtgcacttgatataacaattattgcacaggtaat |
36766683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 383 - 416
Target Start/End: Original strand, 33817355 - 33817388
Alignment:
| Q |
383 |
tatttttaatgatctcacgattatgattgattga |
416 |
Q |
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| T |
33817355 |
tatttttaatgatctaacgattatgattgattga |
33817388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 383 - 416
Target Start/End: Complemental strand, 14004367 - 14004334
Alignment:
| Q |
383 |
tatttttaatgatctcacgattatgattgattga |
416 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
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| T |
14004367 |
tattttaaatgatctcacgattatgattgattga |
14004334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 387 - 416
Target Start/End: Original strand, 15920245 - 15920274
Alignment:
| Q |
387 |
tttaatgatctcacgattatgattgattga |
416 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
15920245 |
tttaatgatctcacgattatgattgattga |
15920274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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