View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9125_low_8 (Length: 742)

Name: NF9125_low_8
Description: NF9125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9125_low_8
NF9125_low_8
[»] chr3 (33 HSPs)
chr3 (20-295)||(1713663-1713932)
chr3 (515-625)||(1713969-1714079)
chr3 (338-443)||(51665765-51665870)
chr3 (344-444)||(53163794-53163894)
chr3 (516-624)||(26442957-26443065)
chr3 (517-624)||(1632816-1632923)
chr3 (673-731)||(1714098-1714156)
chr3 (516-636)||(18271955-18272075)
chr3 (516-618)||(31192073-31192175)
chr3 (340-410)||(12011681-12011751)
chr3 (346-424)||(31436312-31436390)
chr3 (516-621)||(34905857-34905962)
chr3 (516-624)||(2671911-2672019)
chr3 (516-620)||(10593453-10593556)
chr3 (367-474)||(49893331-49893437)
chr3 (375-477)||(26966493-26966595)
chr3 (382-483)||(48725262-48725362)
chr3 (310-474)||(272220-272384)
chr3 (310-475)||(10617306-10617470)
chr3 (375-471)||(13898979-13899075)
chr3 (375-471)||(17752688-17752784)
chr3 (375-471)||(19054008-19054104)
chr3 (352-423)||(27644052-27644123)
chr3 (656-727)||(1692261-1692334)
chr3 (376-477)||(39074416-39074516)
chr3 (375-475)||(27994387-27994487)
chr3 (382-442)||(25743842-25743902)
chr3 (382-442)||(40614462-40614522)
chr3 (516-624)||(40840641-40840748)
chr3 (516-624)||(45852926-45853034)
chr3 (519-602)||(48897675-48897758)
chr3 (376-474)||(52520681-52520778)
chr3 (422-474)||(46352634-46352687)
[»] chr7 (33 HSPs)
chr7 (310-483)||(38128282-38128456)
chr7 (338-474)||(6097336-6097473)
chr7 (312-480)||(32805532-32805701)
chr7 (338-471)||(30924040-30924174)
chr7 (312-474)||(34556914-34557076)
chr7 (338-477)||(13106364-13106504)
chr7 (340-472)||(19434495-19434628)
chr7 (338-474)||(20402389-20402526)
chr7 (517-652)||(46413736-46413874)
chr7 (359-474)||(45842844-45842959)
chr7 (516-605)||(21882761-21882850)
chr7 (516-624)||(23611742-23611849)
chr7 (516-624)||(22631488-22631596)
chr7 (516-615)||(1985023-1985122)
chr7 (548-624)||(8123699-8123775)
chr7 (517-605)||(19511437-19511525)
chr7 (526-604)||(23730507-23730583)
chr7 (541-624)||(46297621-46297704)
chr7 (520-605)||(24250450-24250535)
chr7 (310-474)||(24798425-24798588)
chr7 (375-443)||(38022579-38022647)
chr7 (376-474)||(4628566-4628663)
chr7 (376-474)||(18485961-18486058)
chr7 (376-474)||(34333284-34333381)
chr7 (377-474)||(34546404-34546500)
chr7 (375-412)||(4088488-4088525)
chr7 (523-621)||(44601019-44601109)
chr7 (516-624)||(20125598-20125706)
chr7 (367-474)||(29993567-29993673)
chr7 (367-474)||(27456193-27456298)
chr7 (422-473)||(28587911-28587962)
chr7 (367-477)||(43594116-43594225)
chr7 (422-477)||(18470072-18470129)
[»] chr8 (40 HSPs)
chr8 (340-478)||(18955689-18955828)
chr8 (338-479)||(39751521-39751663)
chr8 (338-486)||(29566688-29566837)
chr8 (338-485)||(40267910-40268058)
chr8 (340-473)||(43714240-43714373)
chr8 (338-450)||(24261390-24261502)
chr8 (312-443)||(42655300-42655431)
chr8 (311-443)||(39206217-39206349)
chr8 (353-442)||(37479600-37479689)
chr8 (340-436)||(2270564-2270659)
chr8 (338-419)||(2490207-2490288)
chr8 (548-653)||(26415531-26415636)
chr8 (516-624)||(29414390-29414498)
chr8 (516-602)||(25124400-25124486)
chr8 (346-451)||(4811581-4811686)
chr8 (516-624)||(38585080-38585188)
chr8 (516-606)||(5718439-5718529)
chr8 (516-618)||(33543362-33543463)
chr8 (516-612)||(5686282-5686378)
chr8 (367-473)||(16888624-16888728)
chr8 (528-618)||(36947229-36947319)
chr8 (341-471)||(13643015-13643144)
chr8 (341-471)||(13743440-13743569)
chr8 (382-476)||(37373204-37373296)
chr8 (375-457)||(37713989-37714071)
chr8 (376-478)||(30675661-30675762)
chr8 (382-476)||(34228680-34228773)
chr8 (376-473)||(21595848-21595943)
chr8 (367-474)||(27988579-27988685)
chr8 (367-474)||(28045881-28045987)
chr8 (367-474)||(33357209-33357315)
chr8 (420-474)||(2490320-2490375)
chr8 (367-477)||(2805340-2805449)
chr8 (386-469)||(33899108-33899190)
chr8 (376-474)||(12203855-12203951)
chr8 (376-474)||(12448283-12448379)
chr8 (397-478)||(12652626-12652707)
chr8 (396-477)||(16394169-16394250)
chr8 (367-472)||(20831633-20831737)
chr8 (375-444)||(16196892-16196961)
[»] chr4 (34 HSPs)
chr4 (340-471)||(34151124-34151255)
chr4 (338-474)||(292114-292251)
chr4 (310-451)||(28119928-28120069)
chr4 (346-474)||(55594131-55594259)
chr4 (338-484)||(16572537-16572684)
chr4 (338-472)||(22225795-22225930)
chr4 (342-474)||(10110053-10110188)
chr4 (338-474)||(11893451-11893588)
chr4 (340-435)||(6493751-6493846)
chr4 (338-474)||(37402808-37402939)
chr4 (363-476)||(8749874-8749987)
chr4 (523-652)||(29065277-29065406)
chr4 (516-624)||(42504186-42504294)
chr4 (516-621)||(5288533-5288638)
chr4 (548-624)||(19482526-19482602)
chr4 (516-624)||(24060584-24060692)
chr4 (541-624)||(25817673-25817756)
chr4 (310-386)||(28120071-28120147)
chr4 (525-621)||(51304300-51304396)
chr4 (367-485)||(32217034-32217151)
chr4 (338-475)||(54897307-54897444)
chr4 (338-400)||(47092657-47092719)
chr4 (367-478)||(32202560-32202670)
chr4 (517-605)||(37762834-37762922)
chr4 (376-474)||(789619-789716)
chr4 (382-475)||(28755620-28755711)
chr4 (516-605)||(30220727-30220815)
chr4 (548-624)||(41545423-41545499)
chr4 (376-474)||(16536048-16536145)
chr4 (542-605)||(35364674-35364737)
chr4 (376-474)||(43202472-43202569)
chr4 (367-473)||(19503185-19503289)
chr4 (385-423)||(24142268-24142306)
chr4 (382-474)||(18067974-18068065)
[»] chr1 (32 HSPs)
chr1 (310-480)||(28725927-28726098)
chr1 (340-477)||(38595804-38595942)
chr1 (339-475)||(30664218-30664354)
chr1 (338-475)||(52702195-52702333)
chr1 (340-474)||(27457002-27457137)
chr1 (339-474)||(10679510-10679650)
chr1 (516-624)||(35413034-35413142)
chr1 (516-624)||(43537137-43537245)
chr1 (519-624)||(21540082-21540187)
chr1 (526-624)||(11470032-11470130)
chr1 (516-624)||(10061600-10061708)
chr1 (575-653)||(13085092-13085170)
chr1 (516-623)||(29657373-29657480)
chr1 (517-624)||(35149657-35149764)
chr1 (367-476)||(24178543-24178651)
chr1 (382-476)||(17333377-17333469)
chr1 (352-433)||(33644399-33644480)
chr1 (367-423)||(37350166-37350222)
chr1 (382-478)||(5694317-5694412)
chr1 (523-624)||(23906605-23906706)
chr1 (516-624)||(26469952-26470060)
chr1 (576-624)||(49313615-49313663)
chr1 (382-472)||(9413973-9414062)
chr1 (382-474)||(13961212-13961302)
chr1 (382-474)||(29657771-29657862)
chr1 (382-481)||(15227732-15227830)
chr1 (532-624)||(48852651-48852743)
chr1 (376-474)||(14350366-14350463)
chr1 (422-473)||(19011129-19011180)
chr1 (340-375)||(23789547-23789582)
chr1 (340-375)||(23822573-23822608)
chr1 (367-474)||(48071483-48071588)
[»] chr6 (26 HSPs)
chr6 (310-474)||(34706720-34706885)
chr6 (338-475)||(34712175-34712313)
chr6 (309-451)||(1127839-1127981)
chr6 (340-454)||(31379418-31379532)
chr6 (516-624)||(32871744-32871853)
chr6 (516-624)||(2130484-2130592)
chr6 (516-605)||(6784694-6784783)
chr6 (516-621)||(28867196-28867301)
chr6 (516-624)||(34713509-34713617)
chr6 (367-476)||(21878427-21878535)
chr6 (367-474)||(7851239-7851345)
chr6 (310-474)||(32929530-32929694)
chr6 (576-624)||(6519248-6519296)
chr6 (516-624)||(11301844-11301952)
chr6 (376-478)||(392092-392193)
chr6 (352-407)||(22021731-22021786)
chr6 (382-474)||(20897948-20898039)
chr6 (367-474)||(34396607-34396713)
chr6 (376-474)||(3515766-3515863)
chr6 (367-477)||(12145197-12145306)
chr6 (415-478)||(23629703-23629765)
chr6 (383-474)||(29451211-29451300)
chr6 (381-442)||(3246180-3246240)
chr6 (338-474)||(18276665-18276800)
chr6 (382-474)||(27433492-27433583)
chr6 (382-459)||(34477645-34477720)
[»] chr5 (30 HSPs)
chr5 (339-477)||(39234828-39234966)
chr5 (310-474)||(14214071-14214236)
chr5 (311-451)||(31467743-31467883)
chr5 (338-474)||(16972176-16972313)
chr5 (340-474)||(21944912-21945047)
chr5 (338-475)||(40608586-40608723)
chr5 (338-472)||(1383324-1383457)
chr5 (358-478)||(32188060-32188180)
chr5 (338-444)||(30889480-30889586)
chr5 (346-442)||(14349592-14349688)
chr5 (516-624)||(3040252-3040360)
chr5 (516-624)||(30735313-30735421)
chr5 (520-653)||(34280102-34280237)
chr5 (516-624)||(25493827-25493935)
chr5 (517-621)||(30700863-30700967)
chr5 (382-483)||(10069960-10070060)
chr5 (376-475)||(34650922-34651019)
chr5 (375-451)||(6042135-6042210)
chr5 (376-479)||(10054441-10054543)
chr5 (367-475)||(21547474-21547580)
chr5 (367-484)||(35132512-35132628)
chr5 (367-483)||(9721687-9721802)
chr5 (382-474)||(13661808-13661899)
chr5 (531-607)||(7547291-7547366)
chr5 (376-475)||(35504329-35504427)
chr5 (367-477)||(6283559-6283668)
chr5 (373-423)||(5302365-5302415)
chr5 (375-424)||(1069610-1069659)
chr5 (386-443)||(17534240-17534297)
chr5 (516-613)||(40519198-40519294)
[»] chr2 (38 HSPs)
chr2 (339-472)||(26269987-26270119)
chr2 (338-478)||(31782615-31782756)
chr2 (338-474)||(44854390-44854526)
chr2 (339-474)||(5282304-5282440)
chr2 (340-475)||(15135772-15135907)
chr2 (312-456)||(28178420-28178564)
chr2 (352-473)||(29771417-29771538)
chr2 (506-649)||(14131139-14131284)
chr2 (339-474)||(45261903-45262045)
chr2 (339-478)||(28012005-28012144)
chr2 (516-649)||(27007152-27007285)
chr2 (516-618)||(19945716-19945818)
chr2 (516-624)||(20142976-20143084)
chr2 (395-475)||(44854309-44854388)
chr2 (516-621)||(35457411-35457516)
chr2 (516-624)||(13716702-13716810)
chr2 (517-624)||(37714431-37714538)
chr2 (516-624)||(38320192-38320300)
chr2 (516-624)||(32976012-32976122)
chr2 (353-444)||(3336412-3336504)
chr2 (516-593)||(31845453-31845530)
chr2 (367-474)||(561598-561704)
chr2 (367-474)||(26891743-26891849)
chr2 (352-407)||(44331839-44331894)
chr2 (382-475)||(20552930-20553022)
chr2 (517-605)||(27407449-27407537)
chr2 (367-474)||(32860102-32860208)
chr2 (376-475)||(44587901-44587999)
chr2 (382-472)||(16807318-16807409)
chr2 (382-472)||(16846599-16846690)
chr2 (375-446)||(30217651-30217721)
chr2 (367-474)||(34442612-34442717)
chr2 (338-476)||(43637163-43637300)
chr2 (376-478)||(3668202-3668302)
chr2 (576-621)||(3167907-3167952)
chr2 (575-624)||(4434305-4434354)
chr2 (382-471)||(30834456-30834545)
chr2 (367-475)||(31438645-31438752)
[»] scaffold0001 (1 HSPs)
scaffold0001 (338-472)||(509039-509173)
[»] scaffold0194 (1 HSPs)
scaffold0194 (516-595)||(27101-27180)
[»] scaffold0122 (1 HSPs)
scaffold0122 (517-624)||(18642-18749)
[»] scaffold0264 (1 HSPs)
scaffold0264 (367-474)||(22961-23067)
[»] scaffold0018 (1 HSPs)
scaffold0018 (548-624)||(69949-70025)
[»] scaffold0206 (1 HSPs)
scaffold0206 (367-474)||(11050-11154)
[»] scaffold0674 (1 HSPs)
scaffold0674 (382-459)||(7992-8067)
[»] scaffold0549 (1 HSPs)
scaffold0549 (382-459)||(7304-7379)
[»] scaffold0003 (1 HSPs)
scaffold0003 (382-474)||(53780-53871)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 1713663 - 1713932
Alignment:
Q  20 cccaaagcatgtcgatggagtcatatattaacatgggacacatgactattgagacgacgttgcatgaagatatccttgccatctcatgtgaggttggagt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1713663 cccaaagcatgtcgatggagtcatatattaacatgggacacatgactattgagacgacgttgcatgaagatatccttgccatctcatgtgaggttggagt 1713762  T
Q  120 tgtattattattatataagagagagaatataaattgaagaagattctattatttgaatgtggtgaatatcattttaaggggattttgatttttataaata 219  Q
    ||   ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||    
T  1713763 tg---tattattatataagagagagaatataaatt---gaagattctattatttgaatgtggtgaatatcattttgagggtattttgatttttatatata 1713856  T
Q  220 atggagatagagatagattcaagnnnnnnntcggaagcctaatcaataataggagaacacataagcatataattaa 295  Q
    ||||||||||||||||||| |||       |||||||||||||||||||||||||||||| |||||||||||||||    
T  1713857 atggagatagagatagattgaagaaaaaaatcggaagcctaatcaataataggagaacacgtaagcatataattaa 1713932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 515 - 625
Target Start/End: Original strand, 1713969 - 1714079
Alignment:
Q  515 ggaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagaca 614  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| | |    
T  1713969 ggaaaatttcaagacagtgtatttattaacatattttcttaattatacacaattatctcccttaatttccgccaaataacaaatttaattgattgaaata 1714068  T
Q  615 ttttcttgatg 625  Q
    |||||||||||    
T  1714069 ttttcttgatg 1714079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 338 - 443
Target Start/End: Original strand, 51665765 - 51665870
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatc 437  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||  ||||||||||||    
T  51665765 ggaaattcttaccataaaatgaagtttcgttgacttatttatgaattaattaaacaattttcaatgcaataattaatatataatttctctttttattatc 51665864  T
Q  438 cttaac 443  Q
    ||||||    
T  51665865 cttaac 51665870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 344 - 444
Target Start/End: Complemental strand, 53163894 - 53163794
Alignment:
Q  344 tcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaac 443  Q
    ||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||| ||| |||||||||||||||    
T  53163894 tcttaccataaaagaaagttttgttgacttatttatggattaattaaacaattttcaatccagtaattaacatataatttccctatttattatccttaac 53163795  T
Q  444 c 444  Q
    |    
T  53163794 c 53163794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 516 - 624
Target Start/End: Complemental strand, 26443065 - 26442957
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    |||||||||||||||||||||||  |||||  |||  ||||||| |||| |||| ||| ||||||||||||||||||||||||||||||| ||||||| |    
T  26443065 gaaaatttcaagacagtgtatttggtaacaccttttgttaattacacaccattacctcccttgatttccgccaaataacaaatttaattggttgagacct 26442966  T
Q  616 tttcttgat 624  Q
    |||||||||    
T  26442965 tttcttgat 26442957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 517 - 624
Target Start/End: Complemental strand, 1632923 - 1632816
Alignment:
Q  517 aaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacatt 616  Q
    |||||| ||||||||||||||| ||||||  |||| ||||||| |||| |||| |||  ||||||||||| |||||||||||||||||  ||||||||||    
T  1632923 aaaattccaagacagtgtatttgttaacacgtttctttaattacacaccattacctcctttgatttccgcaaaataacaaatttaattagttgagacatt 1632824  T
Q  617 ttcttgat 624  Q
    ||||||||    
T  1632823 ttcttgat 1632816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 673 - 731
Target Start/End: Original strand, 1714098 - 1714156
Alignment:
Q  673 ttactaatttaatattcaagttatgtttacaacctttccttatttatatgaacacgaaa 731  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1714098 ttaccaatttaatattcaagttatgtttacaacctttccttatttatatgaacacgaaa 1714156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 516 - 636
Target Start/End: Original strand, 18271955 - 18272075
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    |||||||| |||| || ||||||  |||||  |||| ||||||| |||| |||| |||  |||||||||||||||||||||||||||||| |||||| ||    
T  18271955 gaaaattttaagatagagtatttgctaacacctttctttaattacacaccattacctccattgatttccgccaaataacaaatttaattggttgagatat 18272054  T
Q  616 tttcttgatgtaaactctctt 636  Q
    |||||||||  ||||||||||    
T  18272055 tttcttgataaaaactctctt 18272075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 516 - 618
Target Start/End: Complemental strand, 31192175 - 31192073
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    |||||||| ||||||| ||||||  ||| || |||||||||||| |||| |||||||||||| |||| |   ||||||||||||||||||||||||| ||    
T  31192175 gaaaattttaagacagggtatttgctaatatctttccttaattacacactattatctctcttaattttcaataaataacaaatttaattgattgagatat 31192076  T
Q  616 ttt 618  Q
    |||    
T  31192075 ttt 31192073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 340 - 410
Target Start/End: Complemental strand, 12011751 - 12011681
Alignment:
Q  340 aaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataat 410  Q
    |||||| |||| |||||| |||||||||||||||||||||  ||||||||| |||||||||||||| ||||    
T  12011751 aaattcataccataaaagaaagttttgttgacttatttatgaattaattaaccaattttcaatgcactaat 12011681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 346 - 424
Target Start/End: Complemental strand, 31436390 - 31436312
Alignment:
Q  346 ttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataatttt 424  Q
    ||||| |||||| || ||||||||||||||||||  |||||||| |||||||| |||||||||||||  ||||||||||    
T  31436390 ttaccataaaagaaaattttgttgacttatttatgaattaattacacaatttttaatgcaataattactatataatttt 31436312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 516 - 621
Target Start/End: Complemental strand, 34905962 - 34905857
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    |||||||| ||||||||||||||  |||||  ||||||||||||||||  |||| |||  |||||||  | |||||||||||||||| ||  ||||||||    
T  34905962 gaaaattttaagacagtgtatttgctaacacctttccttaattatacatcattacctcctttgatttttgacaaataacaaatttaactggctgagacat 34905863  T
Q  616 tttctt 621  Q
    ||||||    
T  34905862 tttctt 34905857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 516 - 624
Target Start/End: Complemental strand, 2672019 - 2671911
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    |||||||| |||||||||||||| ||||||| |||||||||||| |||  ||||||||   |||||| |  | |||||||||||||||||  ||| || |    
T  2672019 gaaaattttaagacagtgtatttgttaacatctttccttaattacacatcattatctcctctgattttcagccaataacaaatttaattggctgacacct 2671920  T
Q  616 tttcttgat 624  Q
    |||||||||    
T  2671919 tttcttgat 2671911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 516 - 620
Target Start/End: Original strand, 10593453 - 10593556
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    |||||||| |||| ||||||||| ||||||  ||| | ||||||||||| ||||  | |||||| | |||| |||||||||||||||||| |||||||||    
T  10593453 gaaaattttaagatagtgtatttgttaacaccttttcctaattatacaccattagttttcttgaat-ccgctaaataacaaatttaattggttgagacat 10593551  T
Q  616 tttct 620  Q
    |||||    
T  10593552 tttct 10593556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 367 - 474
Target Start/End: Complemental strand, 49893437 - 49893331
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggtta 465  Q
    |||||||  |||||||||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  ||||||||||| |||||| ||||||| ||||||    
T  49893437 ttgactttattatagattaattacacaattt-caatgcattaactattatataattt-cctttttcatatccttaaccagtgccccgggggcaccggtta 49893340  T
Q  466 gcatttccc 474  Q
    |||||||||    
T  49893339 gcatttccc 49893331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 375 - 477
Target Start/End: Complemental strand, 26966595 - 26966493
Alignment:
Q  375 tttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttagcatttccc 474  Q
    ||||| ||||||||||||||||||||||||||||| ||  |||||||||   |||||| ||||||||| | ||   ||||| || ||||| |||||||||    
T  26966595 tttatggattaattaaacaattttcaatgcaataactactatataatttctttttttagtatccttaatcagtagtcggggacaccggttggcatttccc 26966496  T
Q  475 ata 477  Q
    |||    
T  26966495 ata 26966493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 382 - 483
Target Start/End: Complemental strand, 48725362 - 48725262
Alignment:
Q  382 attaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccg-ggggcatcggttagcatttcccataatt 480  Q
    |||||||| ||||||| ||||||| ||||||  ||||||||| |||||||  ||||||||||| ||||||  |||||| ||||||||||||||||||| |    
T  48725362 attaattacacaattt-caatgcattaattactatataattt-cctttttcatatccttaaccagtgcccccggggcaccggttagcatttcccataaat 48725265  T
Q  481 aaa 483  Q
    |||    
T  48725264 aaa 48725262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 310 - 474
Target Start/End: Complemental strand, 272384 - 272220
Alignment:
Q  310 cggggcaccggttaagcatacnnnnnnnggaaattcttaccgtaaaaggaagtt-ttgttgacttatttatagattaattaaacaattttcaatgcaata 408  Q
    |||||||||| ||||||||||       || |||| ||||| |||||||||  | || |||||||  ||||| |||||||| ||||||| ||||||| ||    
T  272384 cggggcaccgattaagcataccataaaagggaattattaccataaaaggaaactatttttgactttattataaattaattacacaattt-caatgcatta 272286  T
Q  409 attaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggttagcatttccc 474  Q
    | ||  ||||||||| |||||||  ||||||||||| |||||| ||||||| |||||||||||||||    
T  272285 actactatataattt-cctttttcatatccttaaccagtgccccgggggcaccggttagcatttccc 272220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 310 - 475
Target Start/End: Original strand, 10617306 - 10617470
Alignment:
Q  310 cggggcaccggttaagcatacnnnnnnnggaaattcttaccgtaaaaggaagtt-ttgttgacttatttatagattaattaaacaattttcaatgcaata 408  Q
    |||||||| ||||||||||||       || |||| ||||| ||||||||| || || |||||||  ||||| |||||||| |||||||| |||||| ||    
T  10617306 cggggcacgggttaagcataccataaaagggaattattaccataaaaggaaattgtttttgactttattataaattaattacacaatttt-aatgcatta 10617404  T
Q  409 attaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttagcatttccca 475  Q
    | ||  |||||| ||||||||||  ||||||||| | ||| ||||||||| |||||| |||||||||    
T  10617405 actactatataa-tttccttttttatatccttaatcagtgtccgggggcaccggttaacatttccca 10617470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 375 - 471
Target Start/End: Original strand, 13898979 - 13899075
Alignment:
Q  375 tttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttagcattt 471  Q
    ||||| ||||||||| | |||||||||| |||||||||  ||||||||||| ||||||  ||| |||||| ||  ||| |||||||||||| |||||    
T  13898979 tttatggattaattacaaaattttcaatacaataattactatataattttcttttttagcatctttaaccagtatccgagggcatcggttaacattt 13899075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 375 - 471
Target Start/End: Complemental strand, 17752784 - 17752688
Alignment:
Q  375 tttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttagcattt 471  Q
    |||||| |||||||| ||||||||||| ||||||| ||  |||| |||| || ||||| ||||||||||| |||||| |||| | |||||| |||||    
T  17752784 tttataaattaattacacaattttcaacgcaataaatactatatgatttaccattttagtatccttaaccagtgccccggggaaacggttaacattt 17752688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 375 - 471
Target Start/End: Complemental strand, 19054104 - 19054008
Alignment:
Q  375 tttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttagcattt 471  Q
    |||||| |||||||| ||||||||||| ||||||| ||  |||| |||| || ||||| ||||||||||| |||||| |||| | |||||| |||||    
T  19054104 tttataaattaattacacaattttcaacgcaataaatactatatgatttaccattttagtatccttaaccagtgccccggggaaacggttaacattt 19054008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 352 - 423
Target Start/End: Complemental strand, 27644123 - 27644052
Alignment:
Q  352 taaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattt 423  Q
    |||||| || |||||||||||||||||  ||||||||| |||||||| |||| ||||||||  |||||||||    
T  27644123 taaaagaaaattttgttgacttatttaaggattaattacacaatttttaatgtaataattactatataattt 27644052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 656 - 727
Target Start/End: Original strand, 1692261 - 1692334
Alignment:
Q  656 ttgaataagacttttactta--ctaatttaatattcaagttatgtttacaacctttccttatttatatgaacac 727  Q
    ||||||||||||| ||||||  | |||||||||||||| || |||||||| ||||||||||| ||| |||||||    
T  1692261 ttgaataagacttctacttatacaaatttaatattcaacttttgtttacagcctttccttatatatgtgaacac 1692334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 376 - 477
Target Start/End: Complemental strand, 39074516 - 39074416
Alignment:
Q  376 ttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggttagcatttccc 474  Q
    ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  || |||||||| |||||| ||||||| |||||||||||||||    
T  39074516 ttataaattaattacacaattt-caatgcattaactactatataattt-cctttttcatacccttaaccagtgccccgggggcaccggttagcatttccc 39074419  T
Q  475 ata 477  Q
    |||    
T  39074418 ata 39074416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 375 - 475
Target Start/End: Original strand, 27994387 - 27994487
Alignment:
Q  375 tttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggttagcatttcc 473  Q
    ||||| ||||||||| | |||||||| | || ||||||  ||| ||||| | |||||| ||||||||||| |||||| |||||||||||||| |||||||    
T  27994387 tttatggattaattacataattttcactacattaattactataaaattt-cttttttagtatccttaaccagtgccccgggggcatcggttaacatttcc 27994485  T
Q  474 ca 475  Q
    ||    
T  27994486 ca 27994487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 442
Target Start/End: Complemental strand, 25743902 - 25743842
Alignment:
Q  382 attaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaa 442  Q
    |||||||| |||||||| |||||||||||||  ||||||||| | |||||| |||||||||    
T  25743902 attaattacacaatttttaatgcaataattactatataatttccttttttagtatccttaa 25743842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 442
Target Start/End: Complemental strand, 40614522 - 40614462
Alignment:
Q  382 attaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaa 442  Q
    |||| ||| ||||||||||||||||||| ||  ||||||||| |||||||| |||||||||    
T  40614522 attagttacacaattttcaatgcaataactactatataatttccctttttagtatccttaa 40614462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 624
Target Start/End: Original strand, 40840641 - 40840748
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    ||||||||||||| |||||||   ||||| | |||| || ||||||||  |||| |||  |||||||||||||||||| ||||||||||  |||| ||||    
T  40840641 gaaaatttcaagagagtgtataggttaac-tctttctttgattatacatcattacctcctttgatttccgccaaataataaatttaattagttgaaacat 40840739  T
Q  616 tttcttgat 624  Q
    ||| |||||    
T  40840740 ttttttgat 40840748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 624
Target Start/End: Original strand, 45852926 - 45853034
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    |||||||| ||||| ||||||||  |||||  ||| |||||||| | |  |||||||| ||||||| |   ||||||| ||||||||||| ||||||| |    
T  45852926 gaaaattttaagaccgtgtatttgctaacaccttttcttaattacatatcattatctcccttgattgcaagcaaataataaatttaattggttgagactt 45853025  T
Q  616 tttcttgat 624  Q
    |||||||||    
T  45853026 tttcttgat 45853034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 519 - 602
Target Start/End: Original strand, 48897675 - 48897758
Alignment:
Q  519 aatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaa 602  Q
    ||||||||| |||| |||||  |||||| ||| |||||||| |||| ||||| ||  ||||||| || ||||||||||||||||    
T  48897675 aatttcaaggcagtctatttgctaacatcttttcttaattacacaccattatttccattgattttcgacaaataacaaatttaa 48897758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 474
Target Start/End: Complemental strand, 52520778 - 52520681
Alignment:
Q  376 ttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggttagcatttccc 474  Q
    ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  || |||||||| |||||| ||||||| |||||||||||||||    
T  52520778 ttataaattaattacacaattt-caatgcattaactactatataattt-cctttttcatacccttaaccagtgccccgggggcaccggttagcatttccc 52520681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 422 - 474
Target Start/End: Complemental strand, 46352687 - 46352634
Alignment:
Q  422 tttcctttttattatccttaacccgtgccc-gggggcatcggttagcatttccc 474  Q
    ||||||||||  ||||||||||| |||||| ||||||| |||||||||||||||    
T  46352687 tttcctttttcatatccttaaccagtgccccgggggcaccggttagcatttccc 46352634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 2e-57; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 310 - 483
Target Start/End: Complemental strand, 38128456 - 38128282
Alignment:
Q  310 cggggcaccggttaagcatacnnnnnnnggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataa 409  Q
    |||||||| ||||||||||||       ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38128456 cggggcactggttaagcatacaaaaaaaggaaattcttaccataaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataa 38128357  T
Q  410 ttaacatataattttcctttttattatccttaacccgtg-cccgggggcatcggttagcatttcccataattaaa 483  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||| || ||| | ||||||||| |||||    
T  38128356 ttaacatataattttcctttttattatccttaaccggtgtcccgggggcaccgattaacctttcccatatttaaa 38128282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 338 - 474
Target Start/End: Complemental strand, 6097473 - 6097336
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatc 437  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  6097473 ggaaattcttaccataaaaggaagttttgttgacttatttatggattaattaaataattttcaatgcaataattaacatataatttccctttttattatc 6097374  T
Q  438 cttaacccgtg-cccgggggcatcggttagcatttccc 474  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  6097373 cttaaccagtgccccgggggcatcggttagcatttccc 6097336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 312 - 480
Target Start/End: Complemental strand, 32805701 - 32805532
Alignment:
Q  312 gggcaccggttaagcatacnnnnnnnggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataatt 411  Q
    |||||||||||||||||||       ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  32805701 gggcaccggttaagcatacaaaaaaaggaaattcttaccataaaaggaagttttgttgacttatttatggattaattaaacaatttttaatgcaataatt 32805602  T
Q  412 aacatataattttcctttttattatccttaacccgtg-cccgggggcatcggttagcatttcccataatt 480  Q
    |||||||||||| |||||||||||||||||||| ||| ||||||  || ||||||||||||||| |||||    
T  32805601 aacatataatttccctttttattatccttaaccagtgccccgggaacaccggttagcatttcccttaatt 32805532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 338 - 471
Target Start/End: Original strand, 30924040 - 30924174
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatc 437  Q
    ||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  30924040 ggaaattcttaccataaaaggaagttttgttgacttatttatgaattaattaaacaattttcaatgcactaattaacatataatttccctttttattatc 30924139  T
Q  438 cttaacccgtg-cccgggggcatcggttagcattt 471  Q
    ||||||||||| |||||||||| ||||||||||||    
T  30924140 cttaacccgtgccccgggggcaccggttagcattt 30924174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 312 - 474
Target Start/End: Original strand, 34556914 - 34557076
Alignment:
Q  312 gggcaccggttaagcatacnnnnnnnggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataatt 411  Q
    |||||| ||||||||||||       ||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34556914 gggcactggttaagcatacaaaaaaaggaaattcttaccctaaaagaaagttttgttgacttatttatggattaattaaacaattttcaatgcaataatt 34557013  T
Q  412 aacatataattttcctttttattatccttaacccgtgcccgggggcatcggttagcatttccc 474  Q
    |||||||||||| ||||||||||||||||||||  ||||| |||||| | |||||||||||||    
T  34557014 aacatataatttccctttttattatccttaaccaatgccccggggcaccagttagcatttccc 34557076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 338 - 477
Target Start/End: Original strand, 13106364 - 13106504
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttatta-t 436  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |    
T  13106364 ggaaattcttaccataaaaggaagttttgttgacttatttatggattaattaaacaattttcaatgcaataattaacaaataatttccctttttattatt 13106463  T
Q  437 ccttaacccgtgcccgggggcatcggttagcatttcccata 477  Q
    | |||||| ||||||| ||||| ||||||||||||||||||    
T  13106464 ctttaaccagtgcccgagggcaccggttagcatttcccata 13106504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 340 - 472
Target Start/End: Complemental strand, 19434628 - 19434495
Alignment:
Q  340 aaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatcct 439  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19434628 aaattcttaccataaaaggaagttttgttgacttatttatggattaattaaacaattttcaatgcaataattaacatataatttccctttttattatcct 19434529  T
Q  440 taacccgtg-cccgggggcatcggttagcatttc 472  Q
    ||| | ||| ||||| |||| |||||| ||||||    
T  19434528 taatcagtgccccggaggcaccggttaacatttc 19434495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 338 - 474
Target Start/End: Complemental strand, 20402526 - 20402389
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatc 437  Q
    ||||||||||||  |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  20402526 ggaaattcttactataaaaggaagttttgttgacttatttatggattaattaaataattttcaatgcaataattaacatataatttccctttttattatc 20402427  T
Q  438 cttaacccgtg-cccgggggcatcggttagcatttccc 474  Q
    |||||||  || ||||||| || |||||||||||||||    
T  20402426 cttaaccaatgtcccggggacaccggttagcatttccc 20402389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 517 - 652
Target Start/End: Original strand, 46413736 - 46413874
Alignment:
Q  517 aaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgcca---aataacaaatttaattgattgagac 613  Q
    |||||||||||||||||||||| ||||||  |||||||||||| |||  |||| ||| ||||||||||||||   ||||||||||||||||| |||||||    
T  46413736 aaaatttcaagacagtgtatttgttaacacctttccttaattacacatcattacctcccttgatttccgccaccaaataacaaatttaattggttgagac 46413835  T
Q  614 attttcttgatgtaaactctcttgataaatagcaatgct 652  Q
    |||||||||||  ||||||| | ||||||||||||||||    
T  46413836 attttcttgataaaaactctatagataaatagcaatgct 46413874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 359 - 474
Target Start/End: Original strand, 45842844 - 45842959
Alignment:
Q  359 aagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggca 458  Q
    |||||||||||||||||||||  |||||||||| |||||| |||||||||||||||||||||||||| |||||||||||| ||||| ||||||  | |||    
T  45842844 aagttttgttgacttatttatgaattaattaaataatttttaatgcaataattaacatataattttcttttttattatccctaaccagtgccccagagca 45842943  T
Q  459 tcggttagcatttccc 474  Q
     |||||||||||||||    
T  45842944 ccggttagcatttccc 45842959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 516 - 605
Target Start/End: Original strand, 21882761 - 21882850
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattg 605  Q
    |||||||||||||||||||||||  |||||  |||||||||||| |||| |||| ||| ||||||||||| |||||||||||||||||||    
T  21882761 gaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccggcaaataacaaatttaattg 21882850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 516 - 624
Target Start/End: Original strand, 23611742 - 23611849
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    ||||||||||| ||||||||||| ||||||  ||| |||||||| |  || ||| ||||||||||||||| ||||||||||||||||||  |||||||||    
T  23611742 gaaaatttcaaaacagtgtatttgttaacacctttacttaattacatcca-ttacctctcttgatttccgtcaaataacaaatttaatttgttgagacat 23611840  T
Q  616 tttcttgat 624  Q
    |||||||||    
T  23611841 tttcttgat 23611849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 516 - 624
Target Start/End: Complemental strand, 22631596 - 22631488
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    |||||||||||||| |||||||   |||||  |||||||||||| |||| ||||||||  |||||||||| |||||||||||||||||||  |||||  |    
T  22631596 gaaaatttcaagacggtgtattagctaacacctttccttaattacacactattatctcctttgatttccgacaaataacaaatttaattggctgagatct 22631497  T
Q  616 tttcttgat 624  Q
    |||||||||    
T  22631496 tttcttgat 22631488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 516 - 615
Target Start/End: Complemental strand, 1985122 - 1985023
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    |||||||| |||| |||||||||  ||||| ||||||||||||| | || |||| ||  ||||||||||| |||||||||||||||||||  ||||||||    
T  1985122 gaaaattttaagatagtgtatttgctaacacatttccttaattacataccattaccttccttgatttccggcaaataacaaatttaattggctgagacat 1985023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 548 - 624
Target Start/End: Complemental strand, 8123775 - 8123699
Alignment:
Q  548 tttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacattttcttgat 624  Q
    |||| |||||||||||  ||||||||  || ||||||  |||||||||||||||||||| |||||||||||||||||    
T  8123775 tttctttaattatacattattatctccattaatttccaacaaataacaaatttaattgactgagacattttcttgat 8123699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 517 - 605
Target Start/End: Complemental strand, 19511525 - 19511437
Alignment:
Q  517 aaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattg 605  Q
    |||||||| ||||||||||||||||||||  ||||||||||||  ||| ||||||||  |||||||||   |||||| |||||||||||    
T  19511525 aaaatttcgagacagtgtatttattaacacctttccttaattactcactattatctccattgatttccaaaaaataataaatttaattg 19511437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 526 - 604
Target Start/End: Original strand, 23730507 - 23730583
Alignment:
Q  526 agacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaatt 604  Q
    ||||||||||||| ||||||  ||||||||||||  ||| |||| ||||||||||||||| |||||||| |||||||||    
T  23730507 agacagtgtatttgttaacacctttccttaatta--caccattacctctcttgatttccgacaaataacgaatttaatt 23730583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 541 - 624
Target Start/End: Complemental strand, 46297704 - 46297621
Alignment:
Q  541 taacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacattttcttgat 624  Q
    ||||| ||||||||||||| |||| |||| ||| |||||||| || ||||||||||||| || ||  |||||||||||||||||    
T  46297704 taacacatttccttaattacacaccattaactcccttgattttcgacaaataacaaattaaaatggctgagacattttcttgat 46297621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 520 - 605
Target Start/End: Original strand, 24250450 - 24250535
Alignment:
Q  520 atttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattg 605  Q
    |||||||||||| ||||||| ||| || ||| |||||||| | || |||| ||| ||||||||||| ||||||||||||| |||||    
T  24250450 atttcaagacagcgtatttactaatatcttttcttaattacaaaccattacctcccttgatttccgacaaataacaaattaaattg 24250535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 310 - 474
Target Start/End: Original strand, 24798425 - 24798588
Alignment:
Q  310 cggggcaccggttaagcatacnnnnnnnggaaattcttaccgtaaaaggaagtt-ttgttgacttatttatagattaattaaacaattttcaatgcaata 408  Q
    |||||||| ||||||||||||       || |||| ||||| |||||||||  | || |||||||  ||||| |||||||| ||||||| ||||||| ||    
T  24798425 cggggcactggttaagcatactataaaagggaattattaccataaaaggaaactgtttttgactttattataaattaattacacaattt-caatgcatta 24798523  T
Q  409 attaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttagcatttccc 474  Q
    | ||  ||||||||| |||||||  |||||| |||  ||||||||||||| |||||||||||||||    
T  24798524 actactatataattt-cctttttcatatcctcaacaagtgcccgggggcaccggttagcatttccc 24798588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 375 - 443
Target Start/End: Original strand, 38022579 - 38022647
Alignment:
Q  375 tttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaac 443  Q
    ||||||||||||||| |||||||||||| |||||| ||  ||||||||||| || ||| ||||||||||    
T  38022579 tttatagattaattatacaattttcaatacaataactactatataattttctttattagtatccttaac 38022647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 376 - 474
Target Start/End: Complemental strand, 4628663 - 4628566
Alignment:
Q  376 ttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccg-ggggcatcggttagcatttccc 474  Q
    ||||| |||||||||||||||| ||||| | ||| ||  ||||||||| |||||||  ||||||||||| ||||||  ||||||||||||||||||||||    
T  4628663 ttataaattaattaaacaattt-caatgtattaactactatataattt-cctttttcatatccttaaccggtgccccaggggcatcggttagcatttccc 4628566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 376 - 474
Target Start/End: Complemental strand, 18486058 - 18485961
Alignment:
Q  376 ttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggttagcatttccc 474  Q
    ||||| |||||||| ||||||| |||| || ||||||  ||||||||| |||||| | ||||||||||| |||||| ||||||| |||||||||||||||    
T  18486058 ttataaattaattacacaattt-caatacattaattactatataattt-ccttttcaatatccttaaccagtgccccgggggcaccggttagcatttccc 18485961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 376 - 474
Target Start/End: Complemental strand, 34333381 - 34333284
Alignment:
Q  376 ttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggttagcatttccc 474  Q
    ||||| |||||||| ||||||| ||||||| ||||||  ||||||||| |||||||  || |||||||| |||||| ||||||| |||||||||||||||    
T  34333381 ttataaattaattacacaattt-caatgcattaattactatataattt-cctttttcatacccttaaccagtgccccgggggcaccggttagcatttccc 34333284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 377 - 474
Target Start/End: Original strand, 34546404 - 34546500
Alignment:
Q  377 tatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcc-cgggggcatcggttagcatttccc 474  Q
    |||| |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  ||||||||||| || || ||||||||||||||||||||||||    
T  34546404 tataaattaattacacaattt-caatgcattaactactatataattt-cctttttcatatccttaaccggtacctcgggggcatcggttagcatttccc 34546500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 375 - 412
Target Start/End: Original strand, 4088488 - 4088525
Alignment:
Q  375 tttatagattaattaaacaattttcaatgcaataatta 412  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  4088488 tttatagattaattatacaattttcaatgcaataatta 4088525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 523 - 621
Target Start/End: Complemental strand, 44601109 - 44601019
Alignment:
Q  523 tcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacattttctt 621  Q
    ||||||||||||||||  ||||| |||| |||||||| |||  |||||||| ||        |||||||||||||||||||||||||| ||||||||||    
T  44601109 tcaagacagtgtatttgctaacacattttcttaattacacatcattatctccct--------gccaaataacaaatttaattgattgaaacattttctt 44601019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 624
Target Start/End: Complemental strand, 20125706 - 20125598
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    |||||||| ||||||||||||||  ||| |  |||| ||||||| |||| |||||||   || ||||| | ||| |||||||||||||||  ||| ||||    
T  20125706 gaaaatttgaagacagtgtatttgctaatacctttctttaattacacaccattatcttctttaatttctgacaagtaacaaatttaattggctgacacat 20125607  T
Q  616 tttcttgat 624  Q
    |||||||||    
T  20125606 tttcttgat 20125598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 367 - 474
Target Start/End: Original strand, 29993567 - 29993673
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtg-cccgggggcatcggtta 465  Q
    |||||||  ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  ||||||||||| ||| |||||||||| | ||||    
T  29993567 ttgactttattataaattaattacacaattt-caatgcattaactactatataattt-cctttttcatatccttaaccggtgccccgggggcacccgtta 29993664  T
Q  466 gcatttccc 474  Q
    |||||||||    
T  29993665 gcatttccc 29993673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 474
Target Start/End: Original strand, 27456193 - 27456298
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttag 466  Q
    |||||||  ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| | ||||   ||||||||||| ||||||||||||| | |||||    
T  27456193 ttgactttattataaattaattacacaattt-caatgcattaactactatataattt-ctttttccatatccttaaccagtgcccgggggcaccagttag 27456290  T
Q  467 catttccc 474  Q
    ||||||||    
T  27456291 catttccc 27456298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 422 - 473
Target Start/End: Complemental strand, 28587962 - 28587911
Alignment:
Q  422 tttcctttttattatccttaacccgtgcccgggggcatcggttagcatttcc 473  Q
    ||||||||||  ||||||||||| ||| ||||||||| ||||||||||||||    
T  28587962 tttcctttttcatatccttaaccagtgtccgggggcaccggttagcatttcc 28587911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 477
Target Start/End: Original strand, 43594116 - 43594225
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgc-ccgggggcatcggtta 465  Q
    |||||||  ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| | ||||||| |||||||||| |||  |||||| || ||||||    
T  43594116 ttgactttattataaattaattatacaattt-caatgcattaactattatataatttccttttttat-atccttaaccagtgttccggggacaccggtta 43594213  T
Q  466 gcatttcccata 477  Q
    ||||||||||||    
T  43594214 gcatttcccata 43594225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 422 - 477
Target Start/End: Original strand, 18470072 - 18470129
Alignment:
Q  422 tttcctttttattatccttaacccgtgccc--gggggcatcggttagcatttcccata 477  Q
    ||||||||||| ||| ||||||| ||||||  ||||||| ||||||||||||||||||    
T  18470072 tttcctttttagtatgcttaaccggtgcccccgggggcaccggttagcatttcccata 18470129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 3e-56; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 340 - 478
Target Start/End: Complemental strand, 18955828 - 18955689
Alignment:
Q  340 aaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatcct 439  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  18955828 aaattcttaccataaaaggaagttttgttgacttatttatggattaattaaacaattttcaatgcaataattaacatataatttccctttttattatcat 18955729  T
Q  440 taacccgtgcc-cgggggcatcggttagcatttcccataa 478  Q
    ||||| ||||| ||||||||||||||||||||||||||||    
T  18955728 taaccagtgccacgggggcatcggttagcatttcccataa 18955689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 338 - 479
Target Start/End: Original strand, 39751521 - 39751663
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatc 437  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||    
T  39751521 ggaaattcttaccataaaaggaagttttgttgacttatttatagattaattaaacaatttttaatgcaataaataatatataattttcctttttattatc 39751620  T
Q  438 cttaacccgtg-cccgggggcatcggttagcatttcccataat 479  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||    
T  39751621 cttaaccagtgccccgggggcaccggttagcatttcccataat 39751663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 338 - 486
Target Start/End: Complemental strand, 29566837 - 29566688
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatc 437  Q
    ||||||||||| | ||||| ||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  29566837 ggaaattcttatcataaaaagaagttttgttgatttatttatggattaattaaataattttcaatgcaataattaacatataatttccctttttattatc 29566738  T
Q  438 cttaacccgtg-cccgggggcatcggttagcatttcccataattaaatag 486  Q
    ||||||||||| |||||||||| ||||||||||||||||| |||||||||    
T  29566737 cttaacccgtgccccgggggcaccggttagcatttcccattattaaatag 29566688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 338 - 485
Target Start/End: Complemental strand, 40268058 - 40267910
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatc 437  Q
    ||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  40268058 ggaaattattatcataaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacctataatttccctttttattatc 40267959  T
Q  438 cttaacccgtgc-ccgggggcatcggttagcatttcccataattaaata 485  Q
    ||||||| |||| |||||| ||| |||||||||||||||||| ||||||    
T  40267958 cttaaccagtgctccggggacattggttagcatttcccataaataaata 40267910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 340 - 473
Target Start/End: Original strand, 43714240 - 43714373
Alignment:
Q  340 aaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatcct 439  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  43714240 aaatttttaccataaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataatttccctttttattatcc- 43714338  T
Q  440 taacccgtg-cccgggggcatcggttagcatttcc 473  Q
    ||||| ||| |||||||||| |||||||| |||||    
T  43714339 taaccagtgccccgggggcaccggttagcgtttcc 43714373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 338 - 450
Target Start/End: Complemental strand, 24261502 - 24261390
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatc 437  Q
    ||||||||||| | |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  24261502 ggaaattcttatcataaaaggaagttttgttgacttatttatgggttaattaaacaattttcaatgcaataattaacatataatttctctttttattatc 24261403  T
Q  438 cttaacccgtgcc 450  Q
    ||||||| |||||    
T  24261402 cttaaccagtgcc 24261390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 312 - 443
Target Start/End: Original strand, 42655300 - 42655431
Alignment:
Q  312 gggcaccggttaagcatacnnnnnnnggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataatt 411  Q
    |||||||||||||||||||       |||||||||||   ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42655300 gggcaccggttaagcatacaaaaaaaggaaattcttattataaaatgaagttttgttgacttatttatggattaattaaacaattttcaatgcaataatt 42655399  T
Q  412 aacatataattttcctttttattatccttaac 443  Q
    |||||||||||| |||||| ||||||||||||    
T  42655400 aacatataatttaccttttcattatccttaac 42655431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 311 - 443
Target Start/End: Complemental strand, 39206349 - 39206217
Alignment:
Q  311 ggggcaccggttaagcatacnnnnnnnggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataat 410  Q
    ||||||||||||||||||||       ||||||| ||| | |||||| |||||||||||||||||||||  |||||||||| |||||||||| |||||||    
T  39206349 ggggcaccggttaagcatacaaaaaaaggaaatttttatcataaaagaaagttttgttgacttatttatgaattaattaaataattttcaatacaataat 39206250  T
Q  411 taacatataattttcctttttattatccttaac 443  Q
    ||||||||||||| |||||||||||||||||||    
T  39206249 taacatataatttccctttttattatccttaac 39206217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 353 - 442
Target Start/End: Complemental strand, 37479689 - 37479600
Alignment:
Q  353 aaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaa 442  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||    
T  37479689 aaaaggaagttttgttgatttatttatagattaattaaacaattttcaaggcaataattaacatataatttccttttttattatccttaa 37479600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 340 - 436
Target Start/End: Complemental strand, 2270659 - 2270564
Alignment:
Q  340 aaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattat 436  Q
    ||||||||||  |||||||||||||| |||||||||||||  ||||||||||||||||||||| ||||||||||||||||| || ||||||||||||    
T  2270659 aaattcttacaataaaaggaagttttattgacttatttatgcattaattaaacaattttcaatacaataattaacatataa-ttccctttttattat 2270564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 338 - 419
Target Start/End: Original strand, 2490207 - 2490288
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatata 419  Q
    ||||||| ||||| ||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||    
T  2490207 ggaaatttttaccataaaatgaagttttgttgacttatttatgaattaattaaacaattttcaatgcaataattaatatata 2490288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 548 - 653
Target Start/End: Complemental strand, 26415636 - 26415531
Alignment:
Q  548 tttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacattttcttgatgtaaactctcttgataaatagca 647  Q
    |||||||||||| |||  ||||||||| || ||||||| ||||||| ||||||||||| ||||||| ||||||||||  ||||||||| |||||||||||    
T  26415636 tttccttaattacacatcattatctcttttaatttccgtcaaataataaatttaattggttgagaccttttcttgataaaaactctctagataaatagca 26415537  T
Q  648 atgctc 653  Q
    ||||||    
T  26415536 atgctc 26415531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 516 - 624
Target Start/End: Complemental strand, 29414498 - 29414390
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    ||||||||||| |||||| |||| ||||||  |||||||||||| |||| |||| ||  |||||||| || |||||||||||||||||||  ||||||||    
T  29414498 gaaaatttcaaaacagtgcatttgttaacacctttccttaattaaacaccattaccttccttgattttcggcaaataacaaatttaattggctgagacat 29414399  T
Q  616 tttcttgat 624  Q
    |||||||||    
T  29414398 tttcttgat 29414390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 516 - 602
Target Start/End: Complemental strand, 25124486 - 25124400
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaa 602  Q
    ||||||||||||||||||||||| |||| |  ||| |||||||| |||  ||||||||||||||||||||||||||||||| |||||    
T  25124486 gaaaatttcaagacagtgtatttgttaataccttttcttaattacacatcattatctctcttgatttccgccaaataacaactttaa 25124400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 346 - 451
Target Start/End: Complemental strand, 4811686 - 4811581
Alignment:
Q  346 ttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaaccc 445  Q
    ||||| ||||| |||  |||||||| ||||||||  |||||||| ||||||||||||||||||||||  ||||||||||| |||||| ||| |||||||     
T  4811686 ttaccataaaaagaaactttgttgatttatttatgaattaattatacaattttcaatgcaataattactatataattttcttttttagtattcttaaccg 4811587  T
Q  446 gtgccc 451  Q
    ||||||    
T  4811586 gtgccc 4811581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 516 - 624
Target Start/End: Original strand, 38585080 - 38585188
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    |||||||||||  || |||||||  |||||  |||| ||||||| ||||||||| |||  |||||||||||||||| |||||||||||| ||||| ||||    
T  38585080 gaaaatttcaaagcaatgtatttgctaacacttttctttaattacacacaattacctcctttgatttccgccaaatgacaaatttaattaattgaaacat 38585179  T
Q  616 tttcttgat 624  Q
    |||||||||    
T  38585180 tttcttgat 38585188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 516 - 606
Target Start/End: Original strand, 5718439 - 5718529
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattga 606  Q
    |||||||| ||||||||||||||  ||||| ||||||||||||| |||| |||| ||  ||||||||||| ||||||| ||||||||||||    
T  5718439 gaaaattttaagacagtgtatttgctaacacatttccttaattacacaccattaccttccttgatttccgacaaataataaatttaattga 5718529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 516 - 618
Target Start/End: Complemental strand, 33543463 - 33543362
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    |||||| |||||||||| ||||| ||||||  |||  ||||||| ||||| ||||||| ||||||||| |||||||||||||||| |||| |||||||||    
T  33543463 gaaaatatcaagacagtatatttgttaacacctttttttaattacacaca-ttatctcccttgatttcagccaaataacaaattttattggttgagacat 33543365  T
Q  616 ttt 618  Q
    |||    
T  33543364 ttt 33543362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 516 - 612
Target Start/End: Original strand, 5686282 - 5686378
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgaga 612  Q
    ||||||||||||| || ||||||  ||||| ||||| ||||||| | |  |||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  5686282 gaaaatttcaagatagcgtatttgctaacacatttcattaattacatattattacctcccttgatttccggcaaataacaaatttaattgattgaga 5686378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 367 - 473
Target Start/End: Original strand, 16888624 - 16888728
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttag 466  Q
    |||||||  ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  ||||||||||| ||||||||||||| |||||||    
T  16888624 ttgactttattataaattaattacacaattt-caatgcattaactactatataattt-cctttttcatatccttaacctgtgcccgggggcaccggttag 16888721  T
Q  467 catttcc 473  Q
    |||||||    
T  16888722 catttcc 16888728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 528 - 618
Target Start/End: Original strand, 36947229 - 36947319
Alignment:
Q  528 acagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacatttt 618  Q
    |||||||||||||||||| ||||| |||||||||||  |||| ||| ||| ||||  | | |||||||||||||||||||||| |||||||    
T  36947229 acagtgtatttattaacacatttctttaattatacatcattacctcccttcatttttggccaataacaaatttaattgattgatacatttt 36947319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 341 - 471
Target Start/End: Complemental strand, 13643144 - 13643015
Alignment:
Q  341 aattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatcctt 440  Q
    |||| ||||| ||||||||| |||| |||||||  ||||| |||||||| | ||||| ||||||| ||| ||  ||||||||| |||||||  |||||||    
T  13643144 aattattaccataaaaggaattttttttgactttattataaattaattacataattt-caatgcattaactactatataattt-cctttttcgtatcctt 13643047  T
Q  441 aacccgtgccc-gggggcatcggttagcattt 471  Q
    |||| |||||| ||||||| ||||||||||||    
T  13643046 aaccagtgccccgggggcaccggttagcattt 13643015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 341 - 471
Target Start/End: Complemental strand, 13743569 - 13743440
Alignment:
Q  341 aattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatcctt 440  Q
    |||| ||||| ||||||||| |||| |||||||  ||||| |||||||| | ||||| ||||||| ||| ||  ||||||||| |||||||  |||||||    
T  13743569 aattattaccataaaaggaattttttttgactttattataaattaattacataattt-caatgcattaactactatataattt-cctttttcgtatcctt 13743472  T
Q  441 aacccgtgccc-gggggcatcggttagcattt 471  Q
    |||| |||||| ||||||| ||||||||||||    
T  13743471 aaccagtgccccgggggcaccggttagcattt 13743440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 382 - 476
Target Start/End: Complemental strand, 37373296 - 37373204
Alignment:
Q  382 attaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttagcatttcccat 476  Q
    |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  ||||||||||| ||| ||||||||| |||||||||||||||||    
T  37373296 attaattacacaattt-caatgcattaactattatataattt-cctttttcatatccttaaccagtgtccgggggcaccggttagcatttcccat 37373204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 375 - 457
Target Start/End: Original strand, 37713989 - 37714071
Alignment:
Q  375 tttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggc 457  Q
    ||||||||||||||| | ||||||||||||||||| ||  || |||||||| |||||| ||||||||||  |||| |||||||    
T  37713989 tttatagattaattacataattttcaatgcaataactattatgtaattttcttttttagtatccttaactagtgctcgggggc 37714071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 376 - 478
Target Start/End: Original strand, 30675661 - 30675762
Alignment:
Q  376 ttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggttagcatttccc 474  Q
    ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  || |||||||| |||||| ||||||| |||||||||||||||    
T  30675661 ttataaattaattacacaattt-caatgcattaactactatataattt-cctttttcatacccttaaccagtgccccgggggcaccggttagcatttccc 30675758  T
Q  475 ataa 478  Q
    ||||    
T  30675759 ataa 30675762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 382 - 476
Target Start/End: Complemental strand, 34228773 - 34228680
Alignment:
Q  382 attaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccg-ggggcatcggttagcatttcccat 476  Q
    |||||||| ||||||| ||||||| ||||||  ||||||||| |||||||  ||||||||||| ||||||  |||||| |||||||||||||||||    
T  34228773 attaattacacaattt-caatgcattaattactatataattt-cctttttcatatccttaaccagtgcccccggggcaccggttagcatttcccat 34228680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 376 - 473
Target Start/End: Complemental strand, 21595943 - 21595848
Alignment:
Q  376 ttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttagcatttcc 473  Q
    ||||| |||||||| ||||||| ||||||| ||| |   ||||||||| |||||||  || |||||||| ||||||||||||| ||||||||||||||    
T  21595943 ttataaattaattacacaattt-caatgcattaactcctatataattt-cctttttcatacccttaaccagtgcccgggggcaccggttagcatttcc 21595848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 367 - 474
Target Start/End: Original strand, 27988579 - 27988685
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtg-cccgggggcatcggtta 465  Q
    |||||||  ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  ||||||||||| ||| ||||| |||| ||||||    
T  27988579 ttgactttattataaattaattacacaattt-caatgcattaactattatataattt-cctttttcatatccttaaccagtgccccggaggcaccggtta 27988676  T
Q  466 gcatttccc 474  Q
    |||||||||    
T  27988677 gcatttccc 27988685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 367 - 474
Target Start/End: Original strand, 28045881 - 28045987
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtg-cccgggggcatcggtta 465  Q
    |||||||  ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  ||||||||||| ||| ||||| |||| ||||||    
T  28045881 ttgactttattataaattaattacacaattt-caatgcattaactattatataattt-cctttttcatatccttaaccagtgccccggaggcaccggtta 28045978  T
Q  466 gcatttccc 474  Q
    |||||||||    
T  28045979 gcatttccc 28045987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 367 - 474
Target Start/End: Original strand, 33357209 - 33357315
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgc-ccgggggcatcggtta 465  Q
    |||||||  ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  ||||||||||| |||| ||||||||| | ||||    
T  33357209 ttgactttattataaattaattacacaattt-caatgcattaactactatataattt-cctttttcatatccttaaccagtgctccgggggcaccagtta 33357306  T
Q  466 gcatttccc 474  Q
    |||||||||    
T  33357307 gcatttccc 33357315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 474
Target Start/End: Original strand, 2490320 - 2490375
Alignment:
Q  420 attttcctttttattatccttaacccgtg-cccgggggcatcggttagcatttccc 474  Q
    |||| |||||||||||||||||||| ||| ||||| |||| |||||||||||||||    
T  2490320 atttccctttttattatccttaacctgtgccccggaggcaccggttagcatttccc 2490375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 477
Target Start/End: Original strand, 2805340 - 2805449
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtg-cccgggggcatcggtta 465  Q
    |||||||  |||||| ||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  ||||||||||| ||| ||||||||||  |||||    
T  2805340 ttgactttattataggttaattacacaattt-caatgcattaactattatataattt-cctttttcatatccttaaccagtgtcccgggggcactggtta 2805437  T
Q  466 gcatttcccata 477  Q
     |||||||||||    
T  2805438 acatttcccata 2805449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 469
Target Start/End: Original strand, 33899108 - 33899190
Alignment:
Q  386 attaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttagcat 469  Q
    |||| |||||||||||| |||||||||  ||||||||| | ||||||| || ||||||| ||||||  ||||| ||||||||||    
T  33899108 attacacaattttcaattcaataattattatataatttccttttttatcattcttaaccagtgccc-cgggcaccggttagcat 33899190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 376 - 474
Target Start/End: Complemental strand, 12203951 - 12203855
Alignment:
Q  376 ttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttagcatttccc 474  Q
    ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| | |||||  || |||||||| || |||||||||| |||||||||||||||    
T  12203951 ttataaattaattacacaattt-caatgcattaactactatataattt-cttttttcatacccttaaccggtacccgggggcaccggttagcatttccc 12203855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 376 - 474
Target Start/End: Complemental strand, 12448379 - 12448283
Alignment:
Q  376 ttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttagcatttccc 474  Q
    ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| | |||||  || |||||||| || |||||||||| |||||||||||||||    
T  12448379 ttataaattaattacacaattt-caatgcattaactactatataattt-cttttttcatacccttaaccggtacccgggggcaccggttagcatttccc 12448283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 397 - 478
Target Start/End: Complemental strand, 12652707 - 12652626
Alignment:
Q  397 ttcaatgcaataattaacatataattttcctttttattatccttaacccgtgc-ccgggggcatcggttagcatttcccataa 478  Q
    ||||||||| ||| ||  ||||||||| |||||||  ||||||||||| |||| || |||||| |||||||||||||||||||    
T  12652707 ttcaatgcattaactactatataattt-cctttttcatatccttaaccagtgctccaggggcaccggttagcatttcccataa 12652626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 396 - 477
Target Start/End: Original strand, 16394169 - 16394250
Alignment:
Q  396 tttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggttagcatttcccata 477  Q
    |||||||||| ||| ||  ||||||||||| |||| |  |||||||||| |||||| ||||||| ||||||||||||||||||    
T  16394169 tttcaatgcattaactattatataattttctttttcac-atccttaaccagtgccccgggggcaccggttagcatttcccata 16394250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 367 - 472
Target Start/End: Original strand, 20831633 - 20831737
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtg-cccgggggcatcggtta 465  Q
    |||||||  ||||| |||||||| || |||| ||||||| ||| ||  ||||||||| |||||||  ||||||||||| ||| |||||||||| ||||||    
T  20831633 ttgactttattataaattaattatactattt-caatgcattaactactatataattt-cctttttcatatccttaaccagtgtcccgggggcaccggtta 20831730  T
Q  466 gcatttc 472  Q
    |||||||    
T  20831731 gcatttc 20831737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 375 - 444
Target Start/End: Original strand, 16196892 - 16196961
Alignment:
Q  375 tttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacc 444  Q
    |||||| |||||||| ||||||||||||  ||||| ||  ||||||||||| |||||| |||| ||||||    
T  16196892 tttataaattaattacacaattttcaatataataactattatataattttcttttttagtatctttaacc 16196961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 3e-56; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 340 - 471
Target Start/End: Complemental strand, 34151255 - 34151124
Alignment:
Q  340 aaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatcct 439  Q
    ||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34151255 aaattcttaccataaaagaaagttttgttgacttatttatggattaattaaacaattttcaatgcaataattaacatataattttcctttttattatcct 34151156  T
Q  440 taacccgtgcccgggggcatcggttagcattt 471  Q
    ||||| |||||| |||||||||||||||||||    
T  34151155 taaccagtgccccggggcatcggttagcattt 34151124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 338 - 474
Target Start/End: Complemental strand, 292251 - 292114
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatc 437  Q
    ||||||| ||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  292251 ggaaatttttaccataaaaggaagtttggttgacttatttatggattaattaaacaattttcaatgcaataattaacatataatttttctttttattatc 292152  T
Q  438 cttaacccgtg-cccgggggcatcggttagcatttccc 474  Q
    ||||||| ||| ||| |||||| |||||||||||||||    
T  292151 cttaaccggtgcccccggggcaccggttagcatttccc 292114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 310 - 451
Target Start/End: Original strand, 28119928 - 28120069
Alignment:
Q  310 cggggcaccggttaagcatacnnnnnnnggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataa 409  Q
    |||||||| ||||||||||||       ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28119928 cggggcactggttaagcatacaaaaaaaggaaattcttaccataaaaggaagttttgttgacttatttatggattaattaaacaattttcaatgcaataa 28120027  T
Q  410 ttaacatataattttcctttttattatccttaacccgtgccc 451  Q
    ||||||||||||||  ||||||||||||||||||| ||||||    
T  28120028 ttaacatataatttctctttttattatccttaaccggtgccc 28120069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 346 - 474
Target Start/End: Complemental strand, 55594259 - 55594131
Alignment:
Q  346 ttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaaccc 445  Q
    ||||| ||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  55594259 ttaccataaaaggaagttttgttgacttacttatggattaattaaacaatttttaatgcaataattaacatataattttcctttttattatccttaacca 55594160  T
Q  446 gtgcccgggggcatcggttagcatttccc 474  Q
    |||||| | |||| |||||||||||||||    
T  55594159 gtgccccgaggcaccggttagcatttccc 55594131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 338 - 484
Target Start/End: Original strand, 16572537 - 16572684
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatc 437  Q
    ||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  16572537 ggaaattcttaccataaaaagaagttttgttgacttatttatggattaattaaacaattttcaatgcaataattaacatataatttctctttttattatc 16572636  T
Q  438 cttaacccgtgcc-cgggggcatcggttagcatttcccataattaaat 484  Q
    ||||||| ||||| ||| |||| |||||||||||| || ||| |||||    
T  16572637 cttaaccagtgcctcggaggcaccggttagcattttccttaaataaat 16572684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 338 - 472
Target Start/End: Original strand, 22225795 - 22225930
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatc 437  Q
    ||||||| ||| | |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||    
T  22225795 ggaaatttttatcataaaaggaagttttgttgacttatttatggattaattaaacaatttttaatgcaataattaacatatagtttccctttttattatc 22225894  T
Q  438 cttaacccgtg-cccgggggcatcggttagcatttc 472  Q
    ||||||| ||| |||||||||| |||||||||||||    
T  22225895 cttaaccagtgtcccgggggcaccggttagcatttc 22225930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 342 - 474
Target Start/End: Original strand, 10110053 - 10110188
Alignment:
Q  342 attcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaa--ttttcaatgcaataattaacatataattttcctttttattatcct 439  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||    
T  10110053 attcttaccataaaagaaagttttgttgacttatttatagattaattaaacaattttttcaatgcaataattaacatataatttccctttttattatcct 10110152  T
Q  440 taacccgtg-cccgggggcatcggttagcatttccc 474  Q
    ||| | ||| ||||| |||| |||||||||||||||    
T  10110153 taatcagtgtcccggaggcaccggttagcatttccc 10110188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 338 - 474
Target Start/End: Original strand, 11893451 - 11893588
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatc 437  Q
    ||||||| ||| | ||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||    
T  11893451 ggaaatttttatcataaaatgaagttttgttgacttatttatagattaattaaataattttcaattcaataattaacatataatttccctttttattatc 11893550  T
Q  438 cttaacccgtgccc-gggggcatcggttagcatttccc 474  Q
    ||||| | |||||| ||||||| | |||||||||||||    
T  11893551 cttaaacagtgccctgggggcacctgttagcatttccc 11893588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 340 - 435
Target Start/End: Original strand, 6493751 - 6493846
Alignment:
Q  340 aaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttatta 435  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6493751 aaattcttaccataaaaggaagttttgttgacttatttatggattaattaaacaattttcaatgcaataattaacatataatttccctttttatta 6493846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 338 - 474
Target Start/End: Original strand, 37402808 - 37402939
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatc 437  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||      ||||||||||||||||||| |||||||||||||    
T  37402808 ggaaattcttaccataaaaggaagttttgttgacttatttatggattaattaaacaatttt-----taataattaacatataatttccctttttattatc 37402902  T
Q  438 cttaacccgtgcccgggggcatcggttagcatttccc 474  Q
    | ||||| ||| ||||| ||| |||||||||||||||    
T  37402903 cgtaaccagtgtccgggagcaccggttagcatttccc 37402939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 363 - 476
Target Start/End: Original strand, 8749874 - 8749987
Alignment:
Q  363 tttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcatcgg 462  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||  ||| ||||||| |||||| || ||||| || |||||| || ||| |||    
T  8749874 tttgttgacttatttatagattaattacacaattttcaatgtaataattattataaaattttcttttttagtaaccttagccagtgccccggagcaccgg 8749973  T
Q  463 ttagcatttcccat 476  Q
    ||||||||||||||    
T  8749974 ttagcatttcccat 8749987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 523 - 652
Target Start/End: Original strand, 29065277 - 29065406
Alignment:
Q  523 tcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacattttcttg 622  Q
    ||||||| ||| |||  ||||||  |||| ||||||| |||| |||| |||  |||||||||| ||||||||||||||||||||||||||| ||||||||    
T  29065277 tcaagacggtgcattagttaacacctttctttaattacacaccattacctccattgatttccgtcaaataacaaatttaattgattgagactttttcttg 29065376  T
Q  623 atgtaaactctcttgataaatagcaatgct 652  Q
    ||  ||||||| | |||||||| |||||||    
T  29065377 ataaaaactctttagataaataacaatgct 29065406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 516 - 624
Target Start/End: Original strand, 42504186 - 42504294
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    |||||||| |||||||||||||| ||||||  |||||||||||| |||  |||| ||| ||||||||||| ||||||||||||||||||| |||| |  |    
T  42504186 gaaaattttaagacagtgtatttgttaacacctttccttaattacacatcattacctcccttgatttccggcaaataacaaatttaattggttgaaatct 42504285  T
Q  616 tttcttgat 624  Q
    |||||||||    
T  42504286 tttcttgat 42504294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 516 - 621
Target Start/End: Complemental strand, 5288638 - 5288533
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    |||| ||||||||| || |||||  ||||| ||||  ||||||| |||| |||||||| |||||||| || |||||||||||||||||||  ||||||||    
T  5288638 gaaagtttcaagacggtatatttgctaacacatttttttaattacacaccattatctcccttgatttacggcaaataacaaatttaattggctgagacat 5288539  T
Q  616 tttctt 621  Q
    ||||||    
T  5288538 tttctt 5288533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 548 - 624
Target Start/End: Complemental strand, 19482602 - 19482526
Alignment:
Q  548 tttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacattttcttgat 624  Q
    |||||||||||| |||| ||||  || ||||||||||||||||||||||||||||||| |||| | |||||||||||    
T  19482602 tttccttaattacacaccattacttcccttgatttccgccaaataacaaatttaattggttgaaaaattttcttgat 19482526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 516 - 624
Target Start/End: Complemental strand, 24060692 - 24060584
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    |||||||| || |||||||||||  ||||| ||||||||||||| |||| |||||||| |||||||||   | ||||||||||||||||   | ||||||    
T  24060692 gaaaattttaaaacagtgtatttgctaacacatttccttaattacacaccattatctcccttgatttctaaccaataacaaatttaattagcttagacat 24060593  T
Q  616 tttcttgat 624  Q
    |||||||||    
T  24060592 tttcttgat 24060584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 541 - 624
Target Start/End: Complemental strand, 25817756 - 25817673
Alignment:
Q  541 taacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacattttcttgat 624  Q
    ||||| |||| |||||||| |||| |||| ||| ||||||||||| |||||||||||||||||||  |||||| ||||||||||    
T  25817756 taacacattttcttaattacacaccattacctcacttgatttccgtcaaataacaaatttaattggctgagaccttttcttgat 25817673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 310 - 386
Target Start/End: Original strand, 28120071 - 28120147
Alignment:
Q  310 cggggcaccggttaagcatacnnnnnnnggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaa 386  Q
    |||||||| ||||||||||||       ||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  28120071 cggggcacaggttaagcatacaaaaaaaggaaattcttaccataaaaggaagttttgttgacttatttatggattaa 28120147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 525 - 621
Target Start/End: Original strand, 51304300 - 51304396
Alignment:
Q  525 aagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacattttctt 621  Q
    |||||| |||||||  ||||||||||  ||||||  || | ||||||||  |||||||||| ||||||||||||||||||||||| || ||||||||    
T  51304300 aagacaatgtatttgctaacatatttttttaattgcacgccattatctcctttgatttccgtcaaataacaaatttaattgattgtgatattttctt 51304396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 367 - 485
Target Start/End: Complemental strand, 32217151 - 32217034
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggtta 465  Q
    |||||||  ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| | ||||||| |||||||||| |||||| ||||||| | ||||    
T  32217151 ttgactttattataaattaattacacaattt-caatgcattaactactatataatttccttttttat-atccttaaccagtgccccgggggcaccagtta 32217054  T
Q  466 gcatttcccataattaaata 485  Q
    ||||||||||||| ||||||    
T  32217053 gcatttcccataaataaata 32217034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 338 - 475
Target Start/End: Complemental strand, 54897444 - 54897307
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagtt-ttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattat 436  Q
    ||||||| ||||| ||||||||| || || |||||||  ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| ||||| |  |||    
T  54897444 ggaaattattaccataaaaggaaattgtttttgactttattataaattaattatacaattt-caatgcattaactactatataattt-cctttctcatat 54897347  T
Q  437 ccttaacccgtgccc-gggggcatcggttagcatttccca 475  Q
    |||||||| |||||| ||||||| ||||||||||||||||    
T  54897346 ccttaaccagtgccccgggggcaccggttagcatttccca 54897307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 338 - 400
Target Start/End: Complemental strand, 47092719 - 47092657
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttca 400  Q
    ||||||| ||| | ||||| |||||||||||||||||||||| ||||||| ||||||||||||    
T  47092719 ggaaatttttatcataaaatgaagttttgttgacttatttatggattaatcaaacaattttca 47092657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 367 - 478
Target Start/End: Original strand, 32202560 - 32202670
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtg-cccgggggcatcggtta 465  Q
    |||||||  ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| | ||||||| |||||||||||||| ||||||| || ||||||    
T  32202560 ttgactttattataaattaattacacaattt-caatgcattaactactatataatttccttttttat-atccttaacccgtgccccggggacaccggtta 32202657  T
Q  466 gcatttcccataa 478  Q
     ||||||||||||    
T  32202658 acatttcccataa 32202670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 517 - 605
Target Start/End: Complemental strand, 37762922 - 37762834
Alignment:
Q  517 aaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattg 605  Q
    |||||||||||||| ||||||| ||||||  |||||||||||| |||  ||||| ||  |||| || || |||||||||||||||||||    
T  37762922 aaaatttcaagacaatgtatttgttaacacttttccttaattacacatcattatttcctttgactttcgtcaaataacaaatttaattg 37762834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 376 - 474
Target Start/End: Original strand, 789619 - 789716
Alignment:
Q  376 ttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggttagcatttccc 474  Q
    ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  || ||||||||||||||| ||||||| |||||||||||||||    
T  789619 ttataaattaattacacaattt-caatgcattaactactatataattt-cctttttcatacccttaacccgtgccccgggggcaccggttagcatttccc 789716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 475
Target Start/End: Complemental strand, 28755711 - 28755620
Alignment:
Q  382 attaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttagcatttccca 475  Q
    |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  ||||||||||| |||||| ||| || ||||||||||||||||    
T  28755711 attaattacacaattt-caatgcattaactactatataattt-cctttttcatatccttaaccagtgccctgggacaccggttagcatttccca 28755620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 516 - 605
Target Start/End: Complemental strand, 30220815 - 30220727
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattg 605  Q
    |||||||| ||||||||||||||  |||||  |||||||||||| |||| | || ||| ||||||||||| | ||||||||| |||||||    
T  30220815 gaaaattttaagacagtgtatttgctaacacttttccttaattacacaccaata-ctcccttgatttccggccaataacaaaattaattg 30220727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 624
Target Start/End: Complemental strand, 41545499 - 41545423
Alignment:
Q  548 tttccttaattatacacaattatctctctt-gatttccgccaaataacaaatttaattgattgagacattttcttgat 624  Q
    |||| ||||||| ||||||||| || |||| |||||| ||||||||||||||||||||| ||||| | ||||||||||    
T  41545499 tttcattaattacacacaattacct-tcttcgatttctgccaaataacaaatttaattggttgaggccttttcttgat 41545423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 474
Target Start/End: Complemental strand, 16536145 - 16536048
Alignment:
Q  376 ttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggttagcatttccc 474  Q
    ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  || |||||| |||||||| ||||||| |||||||||||||||    
T  16536145 ttataaattaattacacaattt-caatgcattaactactatataattt-cctttttcatacccttaatccgtgccccgggggcaccggttagcatttccc 16536048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 605
Target Start/End: Complemental strand, 35364737 - 35364674
Alignment:
Q  542 aacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattg 605  Q
    ||||| ||||||||||||||| ||||| |||| ||||||||||    |||||||||||||||||    
T  35364737 aacatctttccttaattatactcaattgtctcccttgatttccagtcaataacaaatttaattg 35364674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 474
Target Start/End: Original strand, 43202472 - 43202569
Alignment:
Q  376 ttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggttagcatttccc 474  Q
    ||||| |||||||| |||||||| |||||| ||||||  ||||||||| |||||||  || |||||||  |||||| ||||||| |||||||||||||||    
T  43202472 ttataaattaattacacaatttt-aatgcattaattactatataattt-cctttttcatacccttaactagtgccccgggggcaccggttagcatttccc 43202569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 367 - 473
Target Start/End: Original strand, 19503185 - 19503289
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttag 466  Q
    |||||||  ||||| |||||||| ||||||| ||||| | ||| ||  ||||||||| |||||||  ||||||||||| || |||||| ||| |||||||    
T  19503185 ttgactttattataaattaattacacaattt-caatgtattaactagtatataattt-cctttttcatatccttaaccagtacccgggagcaccggttag 19503282  T
Q  467 catttcc 473  Q
    |||||||    
T  19503283 catttcc 19503289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 385 - 423
Target Start/End: Original strand, 24142268 - 24142306
Alignment:
Q  385 aattaaacaattttcaatgcaataattaacatataattt 423  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  24142268 aattaaacaattttcaatgcaataattactatataattt 24142306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 474
Target Start/End: Original strand, 18067974 - 18068065
Alignment:
Q  382 attaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggttagcatttccc 474  Q
    |||||||| |||||||| |||||| ||| ||  ||||||||| |||||||  || |||||||| |||||| ||||||| |||||||||||||||    
T  18067974 attaattacacaatttt-aatgcattaactactatataattt-cctttttcatacccttaaccagtgccccgggggcaccggttagcatttccc 18068065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 1e-55; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 310 - 480
Target Start/End: Original strand, 28725927 - 28726098
Alignment:
Q  310 cggggcaccggttaagcatacnnnnnnnggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataa 409  Q
    |||||||| ||||||||||||       ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28725927 cggggcactggttaagcatacgaaaaaaggaaattcttaccataaaaggaagttttgttgacttatttatggattaattaaacaattttcaatgcaataa 28726026  T
Q  410 ttaacatataattttcctttttattatccttaacccgtg-cccgggggcatcggttagcatttcccataatt 480  Q
    |||||||||||||| | |||||||||||||||||| ||| |||||||||| ||||||||||||||| |||||    
T  28726027 ttaacatataatttccttttttattatccttaaccagtgccccgggggcaccggttagcatttcccttaatt 28726098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 340 - 477
Target Start/End: Original strand, 38595804 - 38595942
Alignment:
Q  340 aaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatcct 439  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38595804 aaattcttaccataaaaggaagttttgttgacttatttatggattaattaaacaattttcaatgcaataattaacatataatttccctttttattatcct 38595903  T
Q  440 taacccgtg-cccgggggcatcggttagcatttcccata 477  Q
    ||||| ||| |||||||||| ||||||||||||||||||    
T  38595904 taaccagtgccccgggggcaccggttagcatttcccata 38595942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 339 - 475
Target Start/End: Original strand, 30664218 - 30664354
Alignment:
Q  339 gaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatcc 438  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30664218 gaaattcttaccataaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcttttttattatcc 30664317  T
Q  439 ttaacccgtg-cccgggggcatcggttagcatttccca 475  Q
    ||||||  || ||||| |||| ||||||||||||||||    
T  30664318 ttaaccaatgccccggaggca-cggttagcatttccca 30664354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 338 - 475
Target Start/End: Original strand, 52702195 - 52702333
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatc 437  Q
    ||||||| ||||| ||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  52702195 ggaaattattaccataaaatgaagtttttttgacttatttatggattaattaaacaattttcaatgcaataattaacatataatttccctttttattatc 52702294  T
Q  438 cttaacccgtg-cccgggggcatcggttagcatttccca 475  Q
    ||||||| ||| |||||| ||| ||||||||||||||||    
T  52702295 cttaaccagtgccccgggagcaccggttagcatttccca 52702333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 340 - 474
Target Start/End: Original strand, 27457002 - 27457137
Alignment:
Q  340 aaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatcct 439  Q
    ||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||  |||||||||||| |    
T  27457002 aaatttttaccataaaaggaagttttgttgacttatttatggattaattaaacaattttcaatgcactaattaacatataatttcactttttattatctt 27457101  T
Q  440 taacccgtg-cccgggggcatcggttagcatttccc 474  Q
    |||||| || |||||||||| || ||||||||||||    
T  27457102 taacccttgccccgggggcaccgattagcatttccc 27457137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 339 - 474
Target Start/End: Complemental strand, 10679650 - 10679510
Alignment:
Q  339 gaaattcttaccgtaaaaggaagttttgttgacttattta-----tagattaattaaacaattttcaatgcaataattaacatataattttcctttttat 433  Q
    |||||| ||||| |||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10679650 gaaatttttaccataaaaggaagttttgttgacttatttaatttatagattaattaaacaattttcaatgcaataattaacatataatttccctttttat 10679551  T
Q  434 tatccttaacccgtg-cccgggggcatcggttagcatttccc 474  Q
    ||||| ||||| ||| |||||| ||| |||||| ||||||||    
T  10679550 tatcc-taaccagtgccccgggagcaccggttaacatttccc 10679510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 516 - 624
Target Start/End: Complemental strand, 35413142 - 35413034
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    ||||||||||||| ||||||||| ||||||  |||||||||||| |||| |||| ||| ||||||||||| ||||||||||||||||||| ||||||| |    
T  35413142 gaaaatttcaagagagtgtatttgttaacacctttccttaattacacactattacctcccttgatttccgtcaaataacaaatttaattggttgagacct 35413043  T
Q  616 tttcttgat 624  Q
    |||||||||    
T  35413042 tttcttgat 35413034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 516 - 624
Target Start/End: Original strand, 43537137 - 43537245
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    ||||||||||||||||||||||| |||||| ||||| ||||||| |||| |||| ||| ||||||||||| |||||||||||||||||||  |||||| |    
T  43537137 gaaaatttcaagacagtgtatttgttaacacatttctttaattacacaccattacctcccttgatttccggcaaataacaaatttaattggctgagacct 43537236  T
Q  616 tttcttgat 624  Q
    |||||||||    
T  43537237 tttcttgat 43537245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 519 - 624
Target Start/End: Complemental strand, 21540187 - 21540082
Alignment:
Q  519 aatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacatttt 618  Q
    |||||||||||||||||||| ||||||  |||| ||||||| ||   |||||||| ||| |||||||||||||||||||||||||||  |||||||||||    
T  21540187 aatttcaagacagtgtatttgttaacacctttctttaattacacttcattatctcccttaatttccgccaaataacaaatttaattggctgagacatttt 21540088  T
Q  619 cttgat 624  Q
    ||||||    
T  21540087 cttgat 21540082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 526 - 624
Target Start/End: Complemental strand, 11470130 - 11470032
Alignment:
Q  526 agacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacattttcttgat 624  Q
    ||||| ||||||| ||||||||||| |||||||| |||  |||| ||| ||||||||||||||||||||||||||||||| || ||| |||||||||||    
T  11470130 agacaatgtatttcttaacatattttcttaattacacatcattacctcccttgatttccgccaaataacaaatttaattggttaagatattttcttgat 11470032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 516 - 624
Target Start/End: Complemental strand, 10061708 - 10061600
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    ||||||||||||||||| |||||  ||||| ||||||||||||| |||  |||| ||| ||||||||| | ||||||||||||||||||| ||||||| |    
T  10061708 gaaaatttcaagacagtttatttgctaacacatttccttaattacacatcattacctcccttgatttctgtcaaataacaaatttaattggttgagactt 10061609  T
Q  616 tttcttgat 624  Q
    ||| |||||    
T  10061608 ttttttgat 10061600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 575 - 653
Target Start/End: Original strand, 13085092 - 13085170
Alignment:
Q  575 cttgatttccgccaaataacaaatttaattgattgagacattttcttgatgtaaactctcttgataaatagcaatgctc 653  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||||||||  ||||||||| |||||||| ||||||||    
T  13085092 cttgatttccggcaaataacaaatttaattgactgagatattttcttgataaaaactctctagataaataacaatgctc 13085170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 516 - 623
Target Start/End: Complemental strand, 29657480 - 29657373
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    |||||||||||||||||||||||  |||||  |||||||||||| | |  |||| |||  ||||||| || ||||||||||||||||||| ||||||| |    
T  29657480 gaaaatttcaagacagtgtatttgctaacacctttccttaattacatatcattacctcctttgattttcggcaaataacaaatttaattggttgagacct 29657381  T
Q  616 tttcttga 623  Q
    ||||||||    
T  29657380 tttcttga 29657373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 517 - 624
Target Start/End: Original strand, 35149657 - 35149764
Alignment:
Q  517 aaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacatt 616  Q
    |||||||||||| | |||||||  |||||  ||||||||||||||||  |||||||| ||||||||  | ||||||||||||||||||| || ||| |||    
T  35149657 aaaatttcaagagaatgtatttgctaacacctttccttaattatacatcattatctcccttgatttatgtcaaataacaaatttaattggttaagatatt 35149756  T
Q  617 ttcttgat 624  Q
    ||||||||    
T  35149757 ttcttgat 35149764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 367 - 476
Target Start/End: Original strand, 24178543 - 24178651
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggtta 465  Q
    |||||||  |||||||||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  ||||||||||| |||||| ||||||||||||||    
T  24178543 ttgactttattatagattaattacacaattt-caatgcattaactattatataattt-cctttttcatatccttaaccagtgccccgggggcatcggtta 24178640  T
Q  466 gcatttcccat 476  Q
    |||||||||||    
T  24178641 gcatttcccat 24178651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 382 - 476
Target Start/End: Original strand, 17333377 - 17333469
Alignment:
Q  382 attaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttagcatttcccat 476  Q
    |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  ||||||||||| ||||||||||||| |||||||||||||||||    
T  17333377 attaattacacaattt-caatgcattaactactatataattt-cctttttcatatccttaaccagtgcccgggggcaccggttagcatttcccat 17333469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 352 - 433
Target Start/End: Original strand, 33644399 - 33644480
Alignment:
Q  352 taaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttat 433  Q
    |||||||||  |||| |||| |||||||  |||||||| ||||||||||||||||||||||  ||||||||||| |||||||    
T  33644399 taaaaggaaactttgatgacatatttatgaattaattacacaattttcaatgcaataattattatataattttcttttttat 33644480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 367 - 423
Target Start/End: Complemental strand, 37350222 - 37350166
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattt 423  Q
    ||||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||||    
T  37350222 ttgacttatttatggattaattacacaattttcaatgcaacaattaccatataattt 37350166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 382 - 478
Target Start/End: Complemental strand, 5694412 - 5694317
Alignment:
Q  382 attaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccggg-ggcatcggttagcatttcccataa 478  Q
    |||||||| ||||||| ||||||| ||| ||  ||||||||| ||||||||| |||||||||| |||||| || |||| |||||||||||||||||||    
T  5694412 attaattacacaattt-caatgcattaactactatataatttccctttttat-atccttaaccagtgccccggaggcaccggttagcatttcccataa 5694317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 523 - 624
Target Start/End: Original strand, 23906605 - 23906706
Alignment:
Q  523 tcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacattttcttg 622  Q
    |||||||| |||||||  |||||  |||| ||||||| |||| |||| ||||||||||||  | |||||||||||||||||||  ||| || ||||||||    
T  23906605 tcaagacaatgtatttgctaacacctttctttaattacacaccattacctctcttgatttgtggcaaataacaaatttaattggctgaaactttttcttg 23906704  T
Q  623 at 624  Q
    ||    
T  23906705 at 23906706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 516 - 624
Target Start/End: Complemental strand, 26470060 - 26469952
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    |||||||| || |||||||||||  |||||  |||||||||||| |||| |||||||   ||||||| |   |||||| ||||||||||  |||||||||    
T  26470060 gaaaattttaaaacagtgtatttgctaacacctttccttaattacacaccattatcttctttgattttcattaaataataaatttaatttgttgagacat 26469961  T
Q  616 tttcttgat 624  Q
    |||||||||    
T  26469960 tttcttgat 26469952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 576 - 624
Target Start/End: Complemental strand, 49313663 - 49313615
Alignment:
Q  576 ttgatttccgccaaataacaaatttaattgattgagacattttcttgat 624  Q
    |||||||||| | |||||||||||||||| |||||||||||||||||||    
T  49313663 ttgatttccgactaataacaaatttaattaattgagacattttcttgat 49313615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 382 - 472
Target Start/End: Original strand, 9413973 - 9414062
Alignment:
Q  382 attaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttagcatttc 472  Q
    |||||||| ||| |||||||| |||||||||   |||||||||| |||||| |||| ||||||  ||||| |||||| |||||||||||||    
T  9413973 attaattacacagttttcaattcaataattactgtataattttc-tttttaatatctttaaccaatgccccggggcaccggttagcatttc 9414062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 382 - 474
Target Start/End: Complemental strand, 13961302 - 13961212
Alignment:
Q  382 attaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggttagcatttccc 474  Q
    |||||||| ||||||| ||||||| ||| ||  ||||||||||  |||||  |||||||||||||||||| ||||||| |||||||||||||||    
T  13961302 attaattacacaattt-caatgcattaactactatataatttt--ttttttatatccttaacccgtgccccgggggcaccggttagcatttccc 13961212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 474
Target Start/End: Complemental strand, 29657862 - 29657771
Alignment:
Q  382 attaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggttagcatttccc 474  Q
    |||||||| ||||||| ||||||| ||| ||  ||||||||| | ||||||| |||||||||| |||||| ||||||| |||||||||||||||    
T  29657862 attaattatacaattt-caatgcattaactactatataatttccttttttat-atccttaaccagtgccccgggggcaccggttagcatttccc 29657771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 481
Target Start/End: Complemental strand, 15227830 - 15227732
Alignment:
Q  382 attaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccg-ggggcatcggttagcatttcccataatt 480  Q
    |||||||| ||||||| ||||||| ||||||  ||||||||| |||||||  ||||||||||| ||||||  |||| | ||||||||||||||| |||||    
T  15227830 attaattacacaattt-caatgcattaattactatataattt-cctttttcatatccttaaccagtgcccccggggtaccggttagcatttcccttaatt 15227733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 532 - 624
Target Start/End: Complemental strand, 48852743 - 48852651
Alignment:
Q  532 tgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacattttcttgat 624  Q
    ||||||| ||||||| ||| ||||||||||||  |||||||   |||||||   | ||||||||||||||||||||| | ||||||| |||||    
T  48852743 tgtatttgttaacattttttcttaattatacatcattatcttctttgattttttctaaataacaaatttaattgattaaaacatttttttgat 48852651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 474
Target Start/End: Original strand, 14350366 - 14350463
Alignment:
Q  376 ttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgc-ccgggggcatcggttagcatttccc 474  Q
    ||||| |||||||| |||||||| |||||| ||| ||  ||||||||| |||||||  || |||||||| |||| ||||||||| |||||||||||||||    
T  14350366 ttataaattaattacacaatttt-aatgcattaactacaatataattt-cctttttcatacccttaaccggtgctccgggggcaccggttagcatttccc 14350463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 422 - 473
Target Start/End: Original strand, 19011129 - 19011180
Alignment:
Q  422 tttcctttttattatccttaacccgtgcccgggggcatcggttagcatttcc 473  Q
    ||||||||||  |||||||||||||||||| ||| || ||||||||||||||    
T  19011129 tttcctttttcatatccttaacccgtgccccgggacaccggttagcatttcc 19011180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 340 - 375
Target Start/End: Original strand, 23789547 - 23789582
Alignment:
Q  340 aaattcttaccgtaaaaggaagttttgttgacttat 375  Q
    ||||||||||| ||||||||||||||||||||||||    
T  23789547 aaattcttaccataaaaggaagttttgttgacttat 23789582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 340 - 375
Target Start/End: Original strand, 23822573 - 23822608
Alignment:
Q  340 aaattcttaccgtaaaaggaagttttgttgacttat 375  Q
    ||||||||||| ||||||||||||||||||||||||    
T  23822573 aaattcttaccataaaaggaagttttgttgacttat 23822608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 474
Target Start/End: Complemental strand, 48071588 - 48071483
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttag 466  Q
    |||||||  ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| ||||||   ||||||||||| || ||| || |||||||||||    
T  48071588 ttgactttattataaattaattacacaattt-caatgcattaactattatataattt-ccttttacatatccttaaccagtaccccggagcatcggttag 48071491  T
Q  467 catttccc 474  Q
    ||||||||    
T  48071490 catttccc 48071483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 2e-54; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 310 - 474
Target Start/End: Complemental strand, 34706885 - 34706720
Alignment:
Q  310 cggggcaccggttaagcatacnnnnnnnggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataa 409  Q
    |||||||| ||||||||||||       ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34706885 cggggcactggttaagcatacgaaaaaaggaaattcttaccataaaaggaagttttgttgacttatttatggattaattaaacaattttcaatgcaataa 34706786  T
Q  410 ttaacatataattttcctttttattatccttaacccgtg-cccgggggcatcggttagcatttccc 474  Q
    |||||||||||||| |||||||||||||||||||| ||| ||| |||||| |||||||||||||||    
T  34706785 ttaacatataatttccctttttattatccttaaccggtgcccccggggcaccggttagcatttccc 34706720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 338 - 475
Target Start/End: Original strand, 34712175 - 34712313
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatc 437  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||  || |||||||||||||||||||||||| |||||||||||||    
T  34712175 ggaaattcttaccataaaaggaagttttgttgacttatttatagattaattaaaaaaaatttaatgcaataattaacatataatttccctttttattatc 34712274  T
Q  438 cttaacccgtg-cccgggggcatcggttagcatttccca 475  Q
    ||||||| ||| ||||| |||| ||||||||||||||||    
T  34712275 cttaaccagtgccccggaggcaccggttagcatttccca 34712313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 309 - 451
Target Start/End: Complemental strand, 1127981 - 1127839
Alignment:
Q  309 tcggggcaccggttaagcatacnnnnnnnggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaata 408  Q
    ||||||||| ||||||||||||       | ||||||||||| |||||  |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1127981 tcggggcactggttaagcatacaaaaaaagaaaattcttaccataaaaaaaagttttgttgacttatttataaattaattaaacaattttcaatgcaata 1127882  T
Q  409 attaacatataattttcctttttattatccttaacccgtgccc 451  Q
    ||||||||||||||| |||||||||||||||||||| ||||||    
T  1127881 attaacatataatttccctttttattatccttaaccggtgccc 1127839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 340 - 454
Target Start/End: Original strand, 31379418 - 31379532
Alignment:
Q  340 aaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatcct 439  Q
    ||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||    
T  31379418 aaattcttaccataaaaggaagttatgttgacttatttatggattaattaaacaattttaaatgcaataattaatatataatttccctttttattatcct 31379517  T
Q  440 taacccgtgcccggg 454  Q
    ||||| || ||||||    
T  31379518 taaccggtacccggg 31379532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 516 - 624
Target Start/End: Original strand, 32871744 - 32871853
Alignment:
Q  516 gaaaatttc-aagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagaca 614  Q
    ||||||||| ||||||||||||||| |||||| |||||||||||| |||| |||| ||| ||||||||||| ||||||||||||||||||| |||| ||     
T  32871744 gaaaatttctaagacagtgtatttactaacatttttccttaattacacactattacctcccttgatttccgtcaaataacaaatttaattggttgaaacc 32871843  T
Q  615 ttttcttgat 624  Q
    ||||||||||    
T  32871844 ttttcttgat 32871853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 516 - 624
Target Start/End: Original strand, 2130484 - 2130592
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    ||||||||||| || ||||||||  |||||  |||||||||||| ||||||| | |||  |||||||||||||||||||||||||||||| ||||||  |    
T  2130484 gaaaatttcaaaacggtgtatttgctaacacctttccttaattacacacaatcacctcctttgatttccgccaaataacaaatttaattggttgagattt 2130583  T
Q  616 tttcttgat 624  Q
    |||||||||    
T  2130584 tttcttgat 2130592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 516 - 605
Target Start/End: Original strand, 6784694 - 6784783
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattg 605  Q
    ||||||||| ||| |||||||||  |||||  ||| |||||||| |||| |||||||| ||||||||||| |||||||||||||||||||    
T  6784694 gaaaatttcgagatagtgtatttgctaacaccttttcttaattacacaccattatctcccttgatttccgacaaataacaaatttaattg 6784783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 516 - 621
Target Start/End: Complemental strand, 28867301 - 28867196
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    ||||||||||||||| |||||||  ||| | ||||||||||||| | || |||| |||  |||||||||  |||||||||||||||||||||||| || |    
T  28867301 gaaaatttcaagacaatgtatttgctaaaacatttccttaattacatactattacctcctttgatttccaacaaataacaaatttaattgattgaaactt 28867202  T
Q  616 tttctt 621  Q
    ||||||    
T  28867201 tttctt 28867196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 516 - 624
Target Start/End: Complemental strand, 34713617 - 34713509
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    |||||||| |||| ||||||||| ||||||  ||| ||||| || |||| ||||  || |||||||| |||||||||||||||||||||  ||||||||     
T  34713617 gaaaattttaagatagtgtatttgttaacaccttttcttaaatacacaccattacatcccttgattttcgccaaataacaaatttaattagttgagacaa 34713518  T
Q  616 tttcttgat 624  Q
    |||||||||    
T  34713517 tttcttgat 34713509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 367 - 476
Target Start/End: Original strand, 21878427 - 21878535
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccggg-ggcatcggtta 465  Q
    |||||||  ||||| |||||||||| ||||| ||||||| ||| ||  ||||||||| |||||||  ||||||||||||||||||||| |||| ||||||    
T  21878427 ttgactttattataaattaattaaataattt-caatgcattaactactatataattt-cctttttcatatccttaacccgtgcccgggaggcaccggtta 21878524  T
Q  466 gcatttcccat 476  Q
    |||||||||||    
T  21878525 gcatttcccat 21878535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 367 - 474
Target Start/End: Original strand, 7851239 - 7851345
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggtta 465  Q
    |||||||  ||||| |||||||| |||||||| |||||| ||||||  ||||||||||| |||| || |||||||||| |||||| ||||||| ||||||    
T  7851239 ttgactttattataaattaattacacaatttt-aatgcattaattactatataattttctttttcat-atccttaaccagtgccctgggggcaccggtta 7851336  T
Q  466 gcatttccc 474  Q
    |||||||||    
T  7851337 gcatttccc 7851345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 310 - 474
Target Start/End: Original strand, 32929530 - 32929694
Alignment:
Q  310 cggggcaccggttaagcatacnnnnnnnggaaattcttaccgtaaaaggaagtt-ttgttgacttatttatagattaattaaacaattttcaatgcaata 408  Q
    |||||||| ||||||||||||       || |||| ||||| |||||||||  | || |||||||  ||||| |||||||| ||||||| ||||||| ||    
T  32929530 cggggcactggttaagcataccataaaagggaattattaccataaaaggaaactgtttttgactttattataaattaattacacaattt-caatgcatta 32929628  T
Q  409 attaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggttagcatttccc 474  Q
    ||||| ||||||||| |||||||  || ||||||||  ||||| ||||||| |||||||||||||||    
T  32929629 attaatatataattt-cctttttcatacccttaaccattgccccgggggcaccggttagcatttccc 32929694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 576 - 624
Target Start/End: Complemental strand, 6519296 - 6519248
Alignment:
Q  576 ttgatttccgccaaataacaaatttaattgattgagacattttcttgat 624  Q
    ||||||| || |||||||||||||||||||| |||||||||||||||||    
T  6519296 ttgattttcggcaaataacaaatttaattgactgagacattttcttgat 6519248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 516 - 624
Target Start/End: Complemental strand, 11301952 - 11301844
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    |||||||| || | |||||||||  |||||| |||||||||||||| || |||| ||  |||||||| ||  |||||||||||| |||||| |||||| |    
T  11301952 gaaaattttaaaatagtgtatttcctaacatctttccttaattatatactattaccttgcttgattttcgagaaataacaaattcaattgactgagacct 11301853  T
Q  616 tttcttgat 624  Q
    |||| ||||    
T  11301852 tttcatgat 11301844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 376 - 478
Target Start/End: Complemental strand, 392193 - 392092
Alignment:
Q  376 ttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggttagcatttccc 474  Q
    ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  || |||||||| |||||| ||||||| |||||||||||||||    
T  392193 ttataaattaattacacaattt-caatgcattaactactatataattt-cctttttcatacccttaaccagtgccccgggggcaccggttagcatttccc 392096  T
Q  475 ataa 478  Q
    ||||    
T  392095 ataa 392092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 352 - 407
Target Start/End: Complemental strand, 22021786 - 22021731
Alignment:
Q  352 taaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaat 407  Q
    ||||||||| ||||||||||||||||||  |||||||| |||| ||||||||||||    
T  22021786 taaaaggaaattttgttgacttatttatgaattaattacacaagtttcaatgcaat 22021731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 474
Target Start/End: Complemental strand, 20898039 - 20897948
Alignment:
Q  382 attaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggttagcatttccc 474  Q
    |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  ||||||||||| |||||| ||||||| |||||||||||||||    
T  20898039 attaattacacaattt-caatgcattaactactatataattt-cctttttcatatccttaaccagtgccctgggggcaccggttagcatttccc 20897948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 367 - 474
Target Start/End: Original strand, 34396607 - 34396713
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggtta 465  Q
    |||||||  ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  ||||||||||| ||| || ||||||| ||||||    
T  34396607 ttgactttattataaattaattacacaattt-caatgcattaactactatataattt-cctttttcatatccttaacctgtgtcctgggggcaccggtta 34396704  T
Q  466 gcatttccc 474  Q
    |||||||||    
T  34396705 gcatttccc 34396713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 474
Target Start/End: Complemental strand, 3515863 - 3515766
Alignment:
Q  376 ttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggttagcatttccc 474  Q
    ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  || |||||||| |||||| ||||||| |||||||||||||||    
T  3515863 ttataaattaattacacaattt-caatgcattaactactatataattt-cctttttcatacccttaaccagtgccctgggggcaccggttagcatttccc 3515766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 477
Target Start/End: Original strand, 12145197 - 12145306
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggtta 465  Q
    |||||||  ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  ||||||||||  |||| | ||||||| ||||||    
T  12145197 ttgactttattataaattaattacacaattt-caatgcattaactactatataattt-cctttttcatatccttaacaagtgcactgggggcaccggtta 12145294  T
Q  466 gcatttcccata 477  Q
    ||||||||||||    
T  12145295 gcatttcccata 12145306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 415 - 478
Target Start/End: Original strand, 23629703 - 23629765
Alignment:
Q  415 atataattttcctttttattatccttaacccgtgcccgggggcatcggttagcatttcccataa 478  Q
    ||||||||||| |||| || |||||||| | |||||| ||||||||||||| ||||||||||||    
T  23629703 atataattttctttttcat-atccttaatcagtgccccggggcatcggttaacatttcccataa 23629765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 474
Target Start/End: Original strand, 29451211 - 29451300
Alignment:
Q  383 ttaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttagcatttccc 474  Q
    ||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  ||||||||||| |||||||| |||| | |||||||||||||    
T  29451211 ttaattacacaattt-caatgcattaactactatataattt-cctttttcatatccttaaccggtgcccggaggcaccagttagcatttccc 29451300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 442
Target Start/End: Original strand, 3246180 - 3246240
Alignment:
Q  381 gattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaa 442  Q
    ||||||||| |||||||| |||||||||||||   ||||| ||||||||||| |||||||||    
T  3246180 gattaattacacaatttttaatgcaataattactgtataa-tttcctttttagtatccttaa 3246240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 338 - 474
Target Start/End: Original strand, 18276665 - 18276800
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagtt-ttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattat 436  Q
    ||||||| ||||| |||||||||  | || |||||||  ||||| |||||||| |||| || ||||||| ||| ||  ||||||||| |||||||  |||    
T  18276665 ggaaattattaccataaaaggaaactgtttttgactttattataaattaattacacaaatt-caatgcattaactactatataattt-cctttttcatat 18276762  T
Q  437 ccttaacccgtgcccgggggcatcggttagcatttccc 474  Q
    |||||||| |||||| |||||| | |||| ||||||||    
T  18276763 ccttaaccagtgcccaggggcaccagttaacatttccc 18276800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 474
Target Start/End: Complemental strand, 27433583 - 27433492
Alignment:
Q  382 attaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggttagcatttccc 474  Q
    |||||||| |||||||| |||||| ||| ||  ||||||||| |||||||  || |||||||| |||||| ||||||| |||||||||||||||    
T  27433583 attaattacacaatttt-aatgcattaactactatataattt-cctttttcatacccttaaccagtgccccgggggcaccggttagcatttccc 27433492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 459
Target Start/End: Original strand, 34477645 - 34477720
Alignment:
Q  382 attaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcat 459  Q
    |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  ||||||||||| ||||||||||||||    
T  34477645 attaattacacaattt-caatgcattaactactatataattt-cctttttcatatccttaaccagtgcccgggggcat 34477720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 3e-53; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 339 - 477
Target Start/End: Complemental strand, 39234966 - 39234828
Alignment:
Q  339 gaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatcc 438  Q
    |||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  39234966 gaaattcttaccataaaaggaagttttgttgatttatttatggattaattaaacaattgtcaatgcaataattaacatataatttccctttttattatcc 39234867  T
Q  439 ttaacccgtgcccgggggcatcggttagcatttcccata 477  Q
    ||||||||||||| || ||| ||||||||||||||||||    
T  39234866 ttaacccgtgccccggagcaccggttagcatttcccata 39234828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 310 - 474
Target Start/End: Original strand, 14214071 - 14214236
Alignment:
Q  310 cggggcaccggttaagcatacnnnnnnnggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataa 409  Q
    |||| ||||||||||||||||       ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14214071 cgggacaccggttaagcatacaaaaaaaggaaattcttaccataaaaggaagttttgttgacttatttatggattaattaaacaattttcaatgcaataa 14214170  T
Q  410 ttaacatataattttcctttttattatccttaacccgtgcc-cgggggcatcggttagcatttccc 474  Q
    |||||||||||||| |||||||||||||||||||| ||||| |||| ||| |||||| ||||||||    
T  14214171 ttaacatataatttccctttttattatccttaacctgtgcctcgggagcaccggttaacatttccc 14214236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 311 - 451
Target Start/End: Complemental strand, 31467883 - 31467743
Alignment:
Q  311 ggggcaccggttaagcatacnnnnnnnggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataat 410  Q
    ||||||| ||||||||||||       ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31467883 ggggcactggttaagcatacaaaaaaaggaaattcttaccataaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataat 31467784  T
Q  411 taacatataattttcctttttattatccttaacccgtgccc 451  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  31467783 taacatataatttccctttttattatccttaaccggtgccc 31467743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 338 - 474
Target Start/End: Complemental strand, 16972313 - 16972176
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatc 437  Q
    ||||||| ||| | |||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||    
T  16972313 ggaaattattatcataaaaggaagttttgttgacttatttatggattaattaaataatttttaatgcaataattaacatataatttttctttttattatc 16972214  T
Q  438 cttaacccgtgc-ccgggggcatcggttagcatttccc 474  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  16972213 cttaaccagtgctccgggggcatcggttagcatttccc 16972176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 340 - 474
Target Start/End: Original strand, 21944912 - 21945047
Alignment:
Q  340 aaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatcct 439  Q
    ||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  21944912 aaatttttaccataaaaggaagttttgttgacttatttatggattaattaaacaatttttaatgcaataattaatatataattttcctttttattatcct 21945011  T
Q  440 taacccgtg-cccgggggcatcggttagcatttccc 474  Q
    ||||| ||| ||||| |||| |||||||||||||||    
T  21945012 taaccagtgccccggaggcaccggttagcatttccc 21945047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 338 - 475
Target Start/End: Original strand, 40608586 - 40608723
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatc 437  Q
    ||||||||||||| ||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40608586 ggaaattcttaccataaaaggaagttttgttgatttatt-atggattaattaaacaattttcaatgcaataattaacatataatttccctttttattatc 40608684  T
Q  438 cttaacccgtg-cccgggggcatcggttagcatttccca 475  Q
    ||||||| ||| |||||| ||| ||||||||||||||||    
T  40608685 cttaaccagtgtcccgggagcaccggttagcatttccca 40608723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 338 - 472
Target Start/End: Original strand, 1383324 - 1383457
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatc 437  Q
    ||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  1383324 ggaaattcttaccataaaaggaagttttgttgacttttttatggattaattaaacaattttcaatgcaataattaacatataatttcccttcttattatc 1383423  T
Q  438 cttaacccgtgcccgggggcatcggttagcatttc 472  Q
    ||||||| || ||| ||| || |||||||||||||    
T  1383424 cttaaccagtaccc-gggacaccggttagcatttc 1383457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 358 - 478
Target Start/End: Original strand, 32188060 - 32188180
Alignment:
Q  358 gaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcc-cggggg 456  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| ||| ||    
T  32188060 gaagttttgttaacttatttataaattaattaaacaattttcaatgcaataattaacatataatttttctttttattat-cttaaccagtgcctcggagg 32188158  T
Q  457 catcggttagcatttcccataa 478  Q
    ||||||||||||||||||||||    
T  32188159 catcggttagcatttcccataa 32188180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 338 - 444
Target Start/End: Original strand, 30889480 - 30889586
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatc 437  Q
    ||||||| ||| | |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||    
T  30889480 ggaaatttttatcataaaaggaagttttgttgacttatttatagattaattaaataattttcaattcaataattaacatataatttccctttttattatc 30889579  T
Q  438 cttaacc 444  Q
    |||||||    
T  30889580 cttaacc 30889586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 346 - 442
Target Start/End: Complemental strand, 14349688 - 14349592
Alignment:
Q  346 ttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaa 442  Q
    ||||| ||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  14349688 ttaccataaaaagaaattttgttgacttatttatggattaattaaacaattttcaatgcaataattaacatataatttatctttttattatccttaa 14349592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 516 - 624
Target Start/End: Original strand, 3040252 - 3040360
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    |||||||| ||||||||||||||  |||||  |||||||||||| |||| |||| ||| |||||||| | ||| ||||||||||||||||||||||||||    
T  3040252 gaaaattttaagacagtgtatttgctaacacctttccttaattacacaccattacctcccttgattttcaccagataacaaatttaattgattgagacat 3040351  T
Q  616 tttcttgat 624  Q
    |||||||||    
T  3040352 tttcttgat 3040360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 516 - 624
Target Start/End: Original strand, 30735313 - 30735421
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    ||||||||||| |||||||||||  |||||  ||| ||||||||  ||  |||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  30735313 gaaaatttcaaaacagtgtatttgctaacactttttcttaattacccagcattacctcccttgatttccgccaaataacaaatttaattgattgagacat 30735412  T
Q  616 tttcttgat 624  Q
    |||||||||    
T  30735413 tttcttgat 30735421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 520 - 653
Target Start/End: Original strand, 34280102 - 34280237
Alignment:
Q  520 atttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgatt--gagacattt 617  Q
    |||| ||| |||||||||| ||||||| |||||||||||| | || |||||||  ||| ||||||||||||||||||||||||||||||  ||||| ||     
T  34280102 attttaagtcagtgtatttgttaacatctttccttaattacataccattatcttccttaatttccgccaaataacaaatttaattgattgagagactttg 34280201  T
Q  618 tcttgatgtaaactctcttgataaatagcaatgctc 653  Q
    |||||||  ||||||||| |||||||| ||| ||||    
T  34280202 tcttgataaaaactctctagataaataacaacgctc 34280237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 516 - 624
Target Start/End: Complemental strand, 25493935 - 25493827
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    ||||||||||||||||| ||||| |||| | ||||||||||||| |||| |||| |||  |||||||| | |||| ||||||||||||||  ||||||||    
T  25493935 gaaaatttcaagacagtatatttgttaatacatttccttaattacacaccattacctcctttgatttctgacaaagaacaaatttaattggctgagacat 25493836  T
Q  616 tttcttgat 624  Q
    |||||||||    
T  25493835 tttcttgat 25493827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 517 - 621
Target Start/End: Original strand, 30700863 - 30700967
Alignment:
Q  517 aaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacatt 616  Q
    ||||||| ||||||||||||||  |||||  ||| |||||||| |||  |||| ||| ||| |||| || ||||||||||||||||||||||||||||||    
T  30700863 aaaattttaagacagtgtatttgctaacaccttttcttaattacacaacattacctcccttaattttcgtcaaataacaaatttaattgattgagacatt 30700962  T
Q  617 ttctt 621  Q
    |||||    
T  30700963 ttctt 30700967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 382 - 483
Target Start/End: Complemental strand, 10070060 - 10069960
Alignment:
Q  382 attaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggttagcatttcccataatt 480  Q
    |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  ||||||||||| |||||| ||||||| |||||||||||||||||||||    
T  10070060 attaattacacaattt-caatgcattaactactatataattt-cctttttcatatccttaaccagtgccccgggggcaccggttagcatttcccataatt 10069963  T
Q  481 aaa 483  Q
    |||    
T  10069962 aaa 10069960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 376 - 475
Target Start/End: Original strand, 34650922 - 34651019
Alignment:
Q  376 ttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttagcatttccca 475  Q
    ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  || |||||||| ||||||||||||| ||||||||||||||||    
T  34650922 ttataaattaattacacaattt-caatgcattaactactatataattt-cctttttcatacccttaaccagtgcccgggggcaccggttagcatttccca 34651019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 375 - 451
Target Start/End: Original strand, 6042135 - 6042210
Alignment:
Q  375 tttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc 451  Q
    ||||| ||||||||| ||||||||||||||||||||||  ||||||||||  |||||| |||| |||||| ||||||    
T  6042135 tttatggattaattacacaattttcaatgcaataattactatataatttt-ttttttagtatctttaaccagtgccc 6042210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 376 - 479
Target Start/End: Original strand, 10054441 - 10054543
Alignment:
Q  376 ttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggttagcatttccc 474  Q
    ||||| |||||||| ||||||| ||||||| ||||||  ||||||||| |||||||  || |||||||| |||||| ||||||| |||||||||||||||    
T  10054441 ttataaattaattacacaattt-caatgcattaattattatataattt-cctttttcatacccttaaccagtgccccgggggcaccggttagcatttccc 10054538  T
Q  475 ataat 479  Q
     ||||    
T  10054539 ttaat 10054543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 367 - 475
Target Start/End: Original strand, 21547474 - 21547580
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttag 466  Q
    |||||||  ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| | ||||||| ||||||||||  ||||||||| || |||||||    
T  21547474 ttgactttattataaattaattacacaattt-caatgcattaactactatataatttccttttttat-atccttaaccgatgcccggggacaccggttag 21547571  T
Q  467 catttccca 475  Q
    |||||||||    
T  21547572 catttccca 21547580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 367 - 484
Target Start/End: Complemental strand, 35132628 - 35132512
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtg-cccgggggcatcggtta 465  Q
    |||||||  ||||| |||||||| ||||||| ||||| | ||| ||  ||||||||| |||||||  ||||||||||| ||| |||||||||| ||||||    
T  35132628 ttgactttattataaattaattacacaattt-caatgtattaactactatataattt-cctttttcatatccttaaccagtgtcccgggggcaccggtta 35132531  T
Q  466 gcatttcccataattaaat 484  Q
    ||||||||| | |||||||    
T  35132530 gcatttccctttattaaat 35132512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 367 - 483
Target Start/End: Original strand, 9721687 - 9721802
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgt-gcccgggggcatcggtta 465  Q
    |||||||  ||||| ||||||||||||| |||||||||| ||||||  |||||| ||||||||||  ||| ||||||| || ||||| || || ||||||    
T  9721687 ttgactttattataaattaattaaacaa-tttcaatgcattaattactatataa-tttcctttttcatattcttaaccagtagcccgaggacaccggtta 9721784  T
Q  466 gcatttcccataattaaa 483  Q
     |||||||||||| ||||    
T  9721785 acatttcccataaataaa 9721802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 474
Target Start/End: Complemental strand, 13661899 - 13661808
Alignment:
Q  382 attaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgc-ccgggggcatcggttagcatttccc 474  Q
    |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  ||||||||||| |||| ||||||||| |||||||||||||||    
T  13661899 attaattacacaattt-caatgcattaactactatataattt-cctttttcatatccttaaccagtgctccgggggcaccggttagcatttccc 13661808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 531 - 607
Target Start/End: Complemental strand, 7547366 - 7547291
Alignment:
Q  531 gtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgat 607  Q
    ||||||||  ||||| ||||||||||||| | |  |||||||| ||||||||||| |||||||||||||| ||||||    
T  7547366 gtgtatttgctaacacatttccttaattacaaatcattatctc-cttgatttccgtcaaataacaaatttgattgat 7547291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 376 - 475
Target Start/End: Original strand, 35504329 - 35504427
Alignment:
Q  376 ttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtg-cccgggggcatcggttagcatttccc 474  Q
    ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  || |||||||| ||| |||||||||| |||||||||||||||    
T  35504329 ttataaattaattacacaattt-caatgcattaactactatataattt-cctttttcatacccttaaccagtgtcccgggggcaccggttagcatttccc 35504426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 477
Target Start/End: Complemental strand, 6283668 - 6283559
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccggg-ggcatcggtta 465  Q
    |||||||  ||||| |||||||| ||||||| ||||||| ||||||  ||||||||||| |||| || ||| |||||  |||||| || |||| ||||||    
T  6283668 ttgactttattataaattaattacacaattt-caatgcattaattattatataattttctttttcat-atctttaactagtgccccggaggcaccggtta 6283571  T
Q  466 gcatttcccata 477  Q
    ||||||||||||    
T  6283570 gcatttcccata 6283559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 373 - 423
Target Start/End: Original strand, 5302365 - 5302415
Alignment:
Q  373 tatttatagattaattaaacaattttcaatgcaataattaacatataattt 423  Q
    ||||||||||||||||| |||||||||||| |||||| ||  |||||||||    
T  5302365 tatttatagattaattacacaattttcaatacaataactattatataattt 5302415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 375 - 424
Target Start/End: Original strand, 1069610 - 1069659
Alignment:
Q  375 tttatagattaattaaacaattttcaatgcaataattaacatataatttt 424  Q
    ||||| ||| |||||||||||||||||| |||||||||  ||||||||||    
T  1069610 tttatggatcaattaaacaattttcaatacaataattattatataatttt 1069659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 443
Target Start/End: Original strand, 17534240 - 17534297
Alignment:
Q  386 attaaacaattttcaatgcaataattaacatataattttcctttttattatccttaac 443  Q
    |||| ||||||||||| | ||||| ||  |||||||||||||||||| ||||||||||    
T  17534240 attacacaattttcaaagtaataactactatataattttcctttttagtatccttaac 17534297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 613
Target Start/End: Complemental strand, 40519294 - 40519198
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagac 613  Q
    |||||||| ||||||||||||||   || || ||| |||||||| |||  |||| ||| || |||||||  ||||||||||||||||||| |||||||    
T  40519294 gaaaattttaagacagtgtatttgccaatattttttcttaattacacatcattacctccct-gatttccatcaaataacaaatttaattggttgagac 40519198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 3e-50; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 339 - 472
Target Start/End: Complemental strand, 26270119 - 26269987
Alignment:
Q  339 gaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatcc 438  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  26270119 gaaatttttaccataaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataatttctctttttattatcc 26270020  T
Q  439 ttaacccgtgcccgggggcatcggttagcatttc 472  Q
     ||||| ||||||||||||| |||||||||||||    
T  26270019 -taaccagtgcccgggggcaccggttagcatttc 26269987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 338 - 478
Target Start/End: Original strand, 31782615 - 31782756
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatc 437  Q
    ||||||| ||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||    
T  31782615 ggaaatttttaccataaaaagaagttttgttgacttatttatggattaattaaacaattttcaatgcaataattaatatataatttctctttttattatc 31782714  T
Q  438 cttaacccgtg-cccgggggcatcggttagcatttcccataa 478  Q
    ||||| ||||| ||||||| || |||||||||||| ||||||    
T  31782715 cttaatccgtgccccggggacaccggttagcattttccataa 31782756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 338 - 474
Target Start/End: Original strand, 44854390 - 44854526
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatc 437  Q
    ||||||| ||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44854390 ggaaattattaccataaaatgaagttttgttgacttatttatggattaattaaacaattttcaatgcaataattaacatataa-tttcctttttattatc 44854488  T
Q  438 cttaacccgtg-cccgggggcatcggttagcatttccc 474  Q
    ||||||| ||| |||||| | | |||||||||||||||    
T  44854489 cttaaccagtgccccgggagtaccggttagcatttccc 44854526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 339 - 474
Target Start/End: Original strand, 5282304 - 5282440
Alignment:
Q  339 gaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatcc 438  Q
    |||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  5282304 gaaattcttaccataaaaggaagtttttttgacttatttatggattaattaaacaattttcaatgcaataattaacatataatttccccttttattatcc 5282403  T
Q  439 ttaacccgtg-cccgggggcatcggttagcatttccc 474  Q
    |||| | ||| ||||| ||||||| |||| |||||||    
T  5282404 ttaatcagtgtcccggaggcatcgattagtatttccc 5282440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 340 - 475
Target Start/End: Original strand, 15135772 - 15135907
Alignment:
Q  340 aaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatcct 439  Q
    ||||| ||||| |||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15135772 aaattattaccataaaaaaaagttttgttgacttatttatggattaattaaacaattttcaatgcaataattaacatataatttccctttttattatcct 15135871  T
Q  440 taacccgtgcccgggggcatcggttagcatttccca 475  Q
    ||||     ||||| ||||| |||||||||||||||    
T  15135872 taacagtaccccggaggcattggttagcatttccca 15135907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 312 - 456
Target Start/End: Complemental strand, 28178564 - 28178420
Alignment:
Q  312 gggcaccggttaagcatacnnnnnnnggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataatt 411  Q
    |||||| ||||||||||||       ||||||||| ||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  28178564 gggcactggttaagcatacaaataaaggaaattctaaccataaaagaaagttttgttgacttatttatggattaattaaacaattttcaatgtaataatt 28178465  T
Q  412 aacatataattttcctttttattatccttaacccgtgcccggggg 456  Q
    || |||||||||| ||||||||||||||||| |||||||| ||||    
T  28178464 aatatataatttttctttttattatccttaatccgtgccctgggg 28178420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 352 - 473
Target Start/End: Complemental strand, 29771538 - 29771417
Alignment:
Q  352 taaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtg-cc 450  Q
    |||||||||||||||||||||||||||| ||||||||||  ||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||| ||    
T  29771538 taaaaggaagttttgttgacttatttatggattaattaat-aattttcaatgtaataattaacatataatttccttttttattatccttaaccagtgccc 29771440  T
Q  451 cgggggcatcggttagcatttcc 473  Q
    |||||||||||||||||||||||    
T  29771439 cgggggcatcggttagcatttcc 29771417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 506 - 649
Target Start/End: Complemental strand, 14131284 - 14131139
Alignment:
Q  506 aaaatttatg--gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaat 603  Q
    ||||||||||  |||||||| |||| |||||||||  ||||| ||||||||||||| |||| |||||||| ||||||||||||||||||||| |||||||    
T  14131284 aaaatttatgaagaaaattttaagatagtgtatttgctaacacatttccttaattacacaccattatctcgcttgatttccgccaaataacagatttaat 14131185  T
Q  604 tgattgagacattttcttgatgtaaactctcttgataaatagcaat 649  Q
    || |  |||||||||||||||  ||||||||| |||||||||||||    
T  14131184 tggtccagacattttcttgataaaaactctctagataaatagcaat 14131139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 339 - 474
Target Start/End: Complemental strand, 45262045 - 45261903
Alignment:
Q  339 gaaattcttaccgtaaaaggaagttttgttgacttatttatagat--taattaaacaattttcaatgcaataattaacata---taattttcctttttat 433  Q
    |||||| ||||| |||||||||||||||||||||||| |||  ||  ||||||||||||||||||||||||||||||||||   |||||| |||||||||    
T  45262045 gaaattattaccataaaaggaagttttgttgacttatatatttatggtaattaaacaattttcaatgcaataattaacatataataatttccctttttat 45261946  T
Q  434 tatccttaacccgtgccc--gggggcatcggttagcatttccc 474  Q
    ||||||||||| ||||||  ||||||| |||||||||||||||    
T  45261945 tatccttaaccagtgccctggggggcaccggttagcatttccc 45261903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 339 - 478
Target Start/End: Original strand, 28012005 - 28012144
Alignment:
Q  339 gaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatcc 438  Q
    |||||||||| | ||||| |||  ||||||||||||||||||||||||||  |||||||| |||||||||||||  |||||||||||||||||| |||||    
T  28012005 gaaattcttatcataaaaagaaactttgttgacttatttatagattaattccacaattttgaatgcaataattactatataattttcctttttaatatcc 28012104  T
Q  439 ttaacccgtgcccgggggcatcggttagcatttcccataa 478  Q
    |||||| ||  || |||||| |||||| ||||||||||||    
T  28012105 ttaaccagtatcccggggcaccggttatcatttcccataa 28012144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 516 - 649
Target Start/End: Complemental strand, 27007285 - 27007152
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    |||||||| |||||||||||||| ||||||  ||||||||| || |||| |||| ||| ||||||||||||||||||||||||||| ||| ||||||||     
T  27007285 gaaaattttaagacagtgtatttgttaacacttttccttaaatacacactattacctcccttgatttccgccaaataacaaatttatttggttgagacaa 27007186  T
Q  616 tttcttgatgtaaactctcttgataaatagcaat 649  Q
    |||||||||  |||||||||  ||||||||||||    
T  27007185 tttcttgataaaaactctctaaataaatagcaat 27007152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 516 - 618
Target Start/End: Original strand, 19945716 - 19945818
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    |||||||| |||||||||||||| |||| || |||||||||||| |||| |||| ||| ||| ||||||| ||||||||||||||||||||  |||||||    
T  19945716 gaaaattttaagacagtgtatttgttaatatctttccttaattacacaccattacctcccttaatttccgtcaaataacaaatttaattgaccgagacat 19945815  T
Q  616 ttt 618  Q
    |||    
T  19945816 ttt 19945818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 516 - 624
Target Start/End: Complemental strand, 20143084 - 20142976
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    ||||||||||||| |||||||||  |||||  |||||||||||| |||  |||| ||  ||||||||||||||||||| ||||||||||| ||||||| |    
T  20143084 gaaaatttcaagatagtgtattttctaacacctttccttaattacacatcattaccttccttgatttccgccaaataataaatttaattggttgagactt 20142985  T
Q  616 tttcttgat 624  Q
    |||||||||    
T  20142984 tttcttgat 20142976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 395 - 475
Target Start/End: Complemental strand, 44854388 - 44854309
Alignment:
Q  395 ttttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttagcatttccca 475  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||| |  |||||||||| ||||||||||||||||    
T  44854388 ttttcaatgcaataattaatatataattt-cctttttattatccttaaccaggacccgggggcaccggttagcatttccca 44854309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 516 - 621
Target Start/End: Complemental strand, 35457516 - 35457411
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    |||||||| |||| ||| ||||| |||||| ||||||||||||| |||| |||| |||  ||||||||||| |||||| |||||||||||||||| || |    
T  35457516 gaaaattttaagatagtatatttgttaacacatttccttaattacacaccattacctcctttgatttccgctaaataataaatttaattgattgaaacct 35457417  T
Q  616 tttctt 621  Q
    ||||||    
T  35457416 tttctt 35457411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 516 - 624
Target Start/End: Original strand, 13716702 - 13716810
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    ||||||||||| |||||||||||  |||||  ||| |||||||| |||| |||| |||  ||||||| |||||||| ||||||||||||| ||||||| |    
T  13716702 gaaaatttcaaaacagtgtatttgctaacaccttttcttaattacacactattacctcctttgattttcgccaaatcacaaatttaattggttgagactt 13716801  T
Q  616 tttcttgat 624  Q
    |||||||||    
T  13716802 tttcttgat 13716810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 517 - 624
Target Start/End: Complemental strand, 37714538 - 37714431
Alignment:
Q  517 aaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacatt 616  Q
    ||||||| ||| ||||||||||  |||||  |||||||||||| |||| ||||||||  |||||||||  ||||||||||||||||||| |||| || ||    
T  37714538 aaaattttaaggcagtgtatttgctaacacctttccttaattacacaccattatctcctttgatttccatcaaataacaaatttaattggttgatacctt 37714439  T
Q  617 ttcttgat 624  Q
    ||||||||    
T  37714438 ttcttgat 37714431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 516 - 624
Target Start/End: Original strand, 38320192 - 38320300
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacat 615  Q
    |||||||| ||||||||||||||  ||||| ||||||||| ||| |||  |||| |||  ||||||||| |||||||||||||||||||| |||| |  |    
T  38320192 gaaaattttaagacagtgtatttgataacacatttccttatttacacatcattacctcctttgatttccaccaaataacaaatttaattggttgaaaact 38320291  T
Q  616 tttcttgat 624  Q
    |||||||||    
T  38320292 tttcttgat 38320300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 516 - 624
Target Start/End: Original strand, 32976012 - 32976122
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctc--ttgatttccgccaaataacaaatttaattgattgagac 613  Q
    ||||||||||| |||||||||||| |||||  ||| |||||||| | || ||| |  ||   |||||||||| ||||||||||||||||||| |||||||    
T  32976012 gaaaatttcaaaacagtgtatttactaacaccttttcttaattacataccattttaccttctttgatttccgacaaataacaaatttaattggttgagac 32976111  T
Q  614 attttcttgat 624  Q
    |||||||||||    
T  32976112 attttcttgat 32976122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 353 - 444
Target Start/End: Original strand, 3336412 - 3336504
Alignment:
Q  353 aaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataatta--acatataattttcctttttattatccttaacc 444  Q
    |||||||| |||| ||||||| ||||| ||||||||| ||||||||||||||||| | ||  ||||||||||||| |||||| | |||||||||    
T  3336412 aaaaggaattttttttgactt-tttatggattaattatacaattttcaatgcaattactattacatataattttcttttttagtgtccttaacc 3336504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 516 - 593
Target Start/End: Complemental strand, 31845530 - 31845453
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataa 593  Q
    ||||||||  |||||||||||||  |||||| || ||||||||| |||| |||| ||||||||||||||| |||||||    
T  31845530 gaaaatttttagacagtgtatttgctaacatcttaccttaattacacaccattacctctcttgatttccgacaaataa 31845453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 367 - 474
Target Start/End: Original strand, 561598 - 561704
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggtta 465  Q
    |||||||  ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  ||||||||||| |||||| ||||||| ||||||    
T  561598 ttgactttattataaattaattacacaattt-caatgcattaactactatataattt-cctttttcatatccttaaccagtgccccgggggcaccggtta 561695  T
Q  466 gcatttccc 474  Q
    |||||||||    
T  561696 gcatttccc 561704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 367 - 474
Target Start/End: Original strand, 26891743 - 26891849
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtg-cccgggggcatcggtta 465  Q
    |||||||  ||||| |||||||| ||||||| ||||||| ||| ||| ||||||||| | ||||||| |||||||| | ||| |||||||||| ||||||    
T  26891743 ttgactttattataaattaattacacaattt-caatgcattaactaatatataatttccttttttat-atccttaatcagtgtcccgggggcaccggtta 26891840  T
Q  466 gcatttccc 474  Q
    |||||||||    
T  26891841 gcatttccc 26891849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 352 - 407
Target Start/End: Complemental strand, 44331894 - 44331839
Alignment:
Q  352 taaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaat 407  Q
    ||||||||| ||||||||||||||||||  |||||||| |||| ||||||||||||    
T  44331894 taaaaggaaattttgttgacttatttatgaattaattacacaagtttcaatgcaat 44331839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 382 - 475
Target Start/End: Complemental strand, 20553022 - 20552930
Alignment:
Q  382 attaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccg-ggggcatcggttagcatttccca 475  Q
    |||||||| ||||||| ||||||| ||||||  ||||||||| |||||||  ||||||||||| ||||||  |||||| ||||||||||||||||    
T  20553022 attaattacacaattt-caatgcattaattactatataattt-cctttttcatatccttaaccagtgcccccggggcaccggttagcatttccca 20552930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 517 - 605
Target Start/End: Complemental strand, 27407537 - 27407449
Alignment:
Q  517 aaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattg 605  Q
    ||||||| |||| | |||||||  ||| | ||||||||||||| |||  |||||||  |||||||||||  ||||||||||||||||||    
T  27407537 aaaattttaagatactgtatttgctaatacatttccttaattacacagcattatcttccttgatttccggtaaataacaaatttaattg 27407449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 367 - 474
Target Start/End: Complemental strand, 32860208 - 32860102
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtg-cccgggggcatcggtta 465  Q
    |||||||  ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| | ||||||| |||||||||||||| ||| |||||| ||||||    
T  32860208 ttgactttattataaattaattacacaattt-caatgcattaaatactatataatttccttttttat-atccttaacccgtgcccccggggcaccggtta 32860111  T
Q  466 gcatttccc 474  Q
     ||||||||    
T  32860110 acatttccc 32860102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 376 - 475
Target Start/End: Complemental strand, 44587999 - 44587901
Alignment:
Q  376 ttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggttagcatttccc 474  Q
    ||||| |||||||| ||||||| ||||| | ||| ||  ||||||||| | ||||||| |||||||||| |||||| ||||||| |||||||||||||||    
T  44587999 ttataaattaattacacaattt-caatgtattaactactatataatttccttttttat-atccttaaccggtgccccgggggcaccggttagcatttccc 44587902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 472
Target Start/End: Original strand, 16807318 - 16807409
Alignment:
Q  382 attaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcc-cgggggcatcggttagcatttc 472  Q
    |||||||| ||| ||||||||||||||| ||  ||||||||||| |||| |  ||||||||||  |||| ||| |||| |||||||||||||    
T  16807318 attaattacacagttttcaatgcaataactactatataattttctttttaaacatccttaaccaatgcctcggaggcaccggttagcatttc 16807409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 472
Target Start/End: Original strand, 16846599 - 16846690
Alignment:
Q  382 attaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcc-cgggggcatcggttagcatttc 472  Q
    |||||||| ||| ||||||||||||||| ||  ||||||||||| |||| |  ||||||||||  |||| ||| |||| |||||||||||||    
T  16846599 attaattacacagttttcaatgcaataactactatataattttctttttaaacatccttaaccaatgcctcggaggcaccggttagcatttc 16846690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 446
Target Start/End: Original strand, 30217651 - 30217721
Alignment:
Q  375 tttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccg 446  Q
    ||||| |||| |||| ||||||| ||||||||||| ||  ||||||||||| |||||| |||||||||||||    
T  30217651 tttatcgattgattacacaattt-caatgcaataaatactatataattttcttttttagtatccttaacccg 30217721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 474
Target Start/End: Original strand, 34442612 - 34442717
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttag 466  Q
    |||||||  ||||| |||||||| ||||||| ||||||| ||| ||  ||||||| ||| |||| || |||||||||  |||||| |||||| |||||||    
T  34442612 ttgactttattataaattaattacacaattt-caatgcattaactactatataatcttctttttcat-atccttaacatgtgccccggggcaccggttag 34442709  T
Q  467 catttccc 474  Q
    ||||||||    
T  34442710 catttccc 34442717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 338 - 476
Target Start/End: Complemental strand, 43637300 - 43637163
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagtt-ttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattat 436  Q
    ||||||| ||||| ||||| ||| || || |||||||  ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| |||| ||  |||    
T  43637300 ggaaattattaccataaaaagaaattgtttttgactttattataaattaattacacaattt-caatgcattaactactatataattt-ccttattcatat 43637203  T
Q  437 ccttaacccgtgcccgggggcatcggttagcatttcccat 476  Q
    |||||||| ||| |  |||||| |||||||||||||||||    
T  43637202 ccttaaccagtgtctcggggcaccggttagcatttcccat 43637163  T

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Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 376 - 478
Target Start/End: Original strand, 3668202 - 3668302
Alignment:
Q  376 ttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttagcatttccca 475  Q
    ||||| |||||||| ||||||| ||||||| ||| ||  ||||||||| ||||||   || |||||||| ||| ||||||||| |||||||||||| |||    
T  3668202 ttataaattaattacacaattt-caatgcattaactactatataattt-ccttttccatacccttaaccagtgtccgggggcaccggttagcattttcca 3668299  T
Q  476 taa 478  Q
    |||    
T  3668300 taa 3668302  T

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Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 621
Target Start/End: Complemental strand, 3167952 - 3167907
Alignment:
Q  576 ttgatttccgccaaataacaaatttaattgattgagacattttctt 621  Q
    |||||||||| ||||||| ||||||||||| ||||||| |||||||    
T  3167952 ttgatttccgacaaataataaatttaattggttgagaccttttctt 3167907  T

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Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 575 - 624
Target Start/End: Complemental strand, 4434354 - 4434305
Alignment:
Q  575 cttgatttccgccaaataacaaatttaattgattgagacattttcttgat 624  Q
    |||||||| || |||||||||||||||||||| || ||| ||||||||||    
T  4434354 cttgattttcggcaaataacaaatttaattgactgggaccttttcttgat 4434305  T

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Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 471
Target Start/End: Original strand, 30834456 - 30834545
Alignment:
Q  382 attaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttagcattt 471  Q
    |||||||| ||| ||||||||||||||| ||  ||||||||| | ||||||  |||||||||  |||||| | ||||  |||||||||||    
T  30834456 attaattacacagttttcaatgcaataactattatataatttccttttttagcatccttaacttgtgcccagaggcactggttagcattt 30834545  T

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Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 367 - 475
Target Start/End: Complemental strand, 31438752 - 31438645
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggg-gcatcggtta 465  Q
    |||||||  ||||| |||||||| ||||||| ||||||| ||| ||   |||||||| |||||||  ||||||||||| |||||| ||| ||| ||||||    
T  31438752 ttgactttattataaattaattacacaattt-caatgcattaactactgtataattt-cctttttcatatccttaaccagtgccccgggagcaccggtta 31438655  T
Q  466 gcatttccca 475  Q
    ||||||||||    
T  31438654 gcatttccca 31438645  T

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Target: scaffold0001 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 338 - 472
Target Start/End: Original strand, 509039 - 509173
Alignment:
Q  338 ggaaattcttaccgtaaaaggaagttttgttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatc 437  Q
    ||||||| ||||| |||||| |||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||| | |||||||||||    
T  509039 ggaaatttttaccataaaagaaagttttgttgacttatttatgaattaattaaacaattttcaattcaataattaacatataatttccatttttattatc 509138  T
Q  438 cttaacccgtgcccgggggcatcggttagcatttc 472  Q
    ||||||   |  ||||||||| |||||||||||||    
T  509139 cttaactaatatccgggggcaccggttagcatttc 509173  T

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Target: scaffold0194 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 516 - 595
Target Start/End: Original strand, 27101 - 27180
Alignment:
Q  516 gaaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataaca 595  Q
    ||||||||||||||||||||||| ||||||  |||||||||||| || | |||||||| |||||||||||||||||||||    
T  27101 gaaaatttcaagacagtgtatttgttaacacctttccttaattacactctattatctcccttgatttccgccaaataaca 27180  T

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Target: scaffold0122 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 517 - 624
Target Start/End: Complemental strand, 18749 - 18642
Alignment:
Q  517 aaaatttcaagacagtgtatttattaacatatttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacatt 616  Q
    |||| ||||| |||||||||||  ||||| |||||||||||||  ||| |||||||| ||| |||| || |||||||||||||||||||| | |||| ||    
T  18749 aaaaattcaaaacagtgtatttgctaacacatttccttaattactcaccattatctcccttaattttcgacaaataacaaatttaattgactaagacttt 18650  T
Q  617 ttcttgat 624  Q
    ||||||||    
T  18649 ttcttgat 18642  T

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Target: scaffold0264 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 367 - 474
Target Start/End: Complemental strand, 23067 - 22961
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgc-ccgggggcatcggtta 465  Q
    |||||||  ||||| |||||||| ||||||| ||||| | ||||||  ||||||||| |||||||  ||||||||||| |||| ||||||||| ||||||    
T  23067 ttgactttattataaattaattacacaattt-caatgtattaattactatataattt-cctttttcatatccttaaccagtgctccgggggcaccggtta 22970  T
Q  466 gcatttccc 474  Q
    |||||||||    
T  22969 gcatttccc 22961  T

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Target: scaffold0018 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 548 - 624
Target Start/End: Original strand, 69949 - 70025
Alignment:
Q  548 tttccttaattatacacaattatctctcttgatttccgccaaataacaaatttaattgattgagacattttcttgat 624  Q
    |||||||||||| || | |||||||| ||||||||||| | |||||||||||||||||  ||| || ||||||||||    
T  69949 tttccttaattacaccccattatctcccttgatttccggccaataacaaatttaattggctgaaaccttttcttgat 70025  T

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Target: scaffold0206 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 474
Target Start/End: Original strand, 11050 - 11154
Alignment:
Q  367 ttgacttatttatagattaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcatcggttag 466  Q
    |||||||  |||||| ||||||| ||||||| ||||||| ||| ||| ||||||||| |||||||  ||||||||||| ||| || |||||| | |||||    
T  11050 ttgactttattatagtttaattacacaattt-caatgcattaactaatatataattt-cctttttcatatccttaaccagtgtcc-ggggcaccagttag 11146  T
Q  467 catttccc 474  Q
    ||||||||    
T  11147 catttccc 11154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 459
Target Start/End: Original strand, 7992 - 8067
Alignment:
Q  382 attaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcat 459  Q
    |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  ||||||||||| ||||||||||||||    
T  7992 attaattacacaattt-caatgcattaactactatataattt-cctttttcatatccttaaccagtgcccgggggcat 8067  T

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Target: scaffold0549 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 459
Target Start/End: Complemental strand, 7379 - 7304
Alignment:
Q  382 attaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgcccgggggcat 459  Q
    |||||||| ||||||| ||||||| ||| ||  ||||||||| |||||||  ||||||||||| ||||||||||||||    
T  7379 attaattacacaattt-caatgcattaactactatataattt-cctttttcatatccttaaccagtgcccgggggcat 7304  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 474
Target Start/End: Original strand, 53780 - 53871
Alignment:
Q  382 attaattaaacaattttcaatgcaataattaacatataattttcctttttattatccttaacccgtgccc-gggggcatcggttagcatttccc 474  Q
    |||||||| |||||||| |||||| ||| ||  ||||||||| |||||||  || |||||||| |||||| ||||||| |||||||||||||||    
T  53780 attaattacacaatttt-aatgcattaactactatataattt-cctttttcatacccttaaccagtgccccgggggcaccggttagcatttccc 53871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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