View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9125_low_9 (Length: 471)
Name: NF9125_low_9
Description: NF9125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9125_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 14 - 458
Target Start/End: Original strand, 37835423 - 37835867
Alignment:
| Q |
14 |
agagaataaccagtgaagactccaatttctaatgnnnnnnnagcattcataattttaagaagcatagatatgaattgtgcttcatccaaaggcacattca |
113 |
Q |
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| T |
37835423 |
agagaataaccagtgaagactccaatttctaatgtttttttagcattcataattttaagaagcatagatatgaattgtgcttcatccaaaggcacattca |
37835522 |
T |
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| Q |
114 |
ttatactcctgccagtgccacccccaacaaaaattaaaatcaaattaattttatacaactaattatatttgatcattatgattataattataaattgctt |
213 |
Q |
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| T |
37835523 |
ttatactcctgccagtgccacccccaacaaaaattaaaatcaaattaattttatacaactaattatatttaatcattatgattaaaattataaattgctt |
37835622 |
T |
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| Q |
214 |
tgattatatcgatcgtattgtattattatgtgtaacttacaatttcccatgcttctgaagtgttgtttctctaagttgtttcaattgttcgtgctctttt |
313 |
Q |
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| T |
37835623 |
tgattatatcgatcgtattgtattattatgtgtaacttacaatttcccatacttctgaattgttgtttctctaagttgtttcaattgttcgtgctctttt |
37835722 |
T |
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| Q |
314 |
ggataggaacttgtttcaagaatgtactggttaaaaaacaagatgacaaaatttaattaatatctctattaaaagttgtatctggtttcagtgaaattag |
413 |
Q |
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| T |
37835723 |
ggataggaacttgtttcaagaatgtactggttaaaagacaagatgacaaaatttaattaatatctctattaaaagttgtatctggtttcagtgaaattag |
37835822 |
T |
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| Q |
414 |
ttaattattacctgaagaagtgctggagttttgaggatgttcttg |
458 |
Q |
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| T |
37835823 |
ttaattattacctgaagaagtgctggagttttgaggatgttcttg |
37835867 |
T |
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