View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9126_low_11 (Length: 348)
Name: NF9126_low_11
Description: NF9126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9126_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 41 - 340
Target Start/End: Complemental strand, 43395070 - 43394771
Alignment:
| Q |
41 |
tatgaatatcggttactagcaaattattacttagtaatgaaattatgaaattccagaccagaataataatgaaaaaatatgataataataaagtggtgaa |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43395070 |
tatgaatatcggttactagcaaattattacttagtaatgaaattatgaaattccagaccagaataataatgaaaaaatatgataataataaagtggtgaa |
43394971 |
T |
|
| Q |
141 |
tttgttgtgactgaccgatatatttcaacgtaattaaaagtatgagacaagttatcagattttccagctggtttgagatccatccaagcatcaacatcta |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43394970 |
tttgttgtgactgaccgatatatttcaacgtaattaaaagtatgagacaagttatcagattttccagctggtttgagatccatccaagcatcaacatcta |
43394871 |
T |
|
| Q |
241 |
caaaaaacttctgccccagcgtcctttcttcgggtcttgctccatgaaaaccatagaaaatcaatcccttcagaatcagtttgtctcctgatatctctgc |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43394870 |
caaaaaacttctgccccagcgtcctttcttcgggtcttgctccatgaaaaccatagaaaatcaatcccttcagaatcagtttgtctcctgatatcactgc |
43394771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 147 - 328
Target Start/End: Complemental strand, 43399469 - 43399288
Alignment:
| Q |
147 |
gtgactgaccgatatatttcaacgtaattaaaagtatgagacaagttatcagattttccagctggtttgagatccatccaagcatcaacatctacaaaaa |
246 |
Q |
| |
|
||||||||| ||||||||||| ||||| | ||||||||||| || | |||||| ||||||||||||| ||||||||||||||||| | |||||||| || |
|
|
| T |
43399469 |
gtgactgacagatatatttcagcgtaactgaaagtatgagataaatgatcagaaattccagctggtttaagatccatccaagcatctatatctacaacaa |
43399370 |
T |
|
| Q |
247 |
acttctgccccagcgtcctttcttcgggtcttgctccatgaaaaccatagaaaatcaatcccttcagaatcagtttgtctcc |
328 |
Q |
| |
|
||||||| || || || ||||||| | ||||||||||||||||| |||| | |||||||| ||||||||||| ||||| |
|
|
| T |
43399369 |
acttctgtccaagggtattttcttcctttattgctccatgaaaaccaaagaatgttaatcccttaagaatcagtttatctcc |
43399288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 157 - 328
Target Start/End: Original strand, 37410589 - 37410760
Alignment:
| Q |
157 |
gatatatttcaacgtaattaaaagtatgagacaagttatcagattttccagctggtttgagatccatccaagcatcaacatctacaaaaaacttctgccc |
256 |
Q |
| |
|
||||||||||| ||||| |||||| || |||||||||||||||||||||||| ||||||||||||| ||||||||| || ||||| | ||||||||| || |
|
|
| T |
37410589 |
gatatatttcagcgtaactaaaagaatcagacaagttatcagattttccagcaggtttgagatccaaccaagcatccacgtctaccacaaacttctgtcc |
37410688 |
T |
|
| Q |
257 |
cagcgtcctttcttcgggtcttgctccatgaaaaccatagaaaatcaatcccttcagaatcagtttgtctcc |
328 |
Q |
| |
|
|| ||||||||||| | | ||||||| ||||||||||||||| |||||||| ||||||| ||||||||||| |
|
|
| T |
37410689 |
tagtgtcctttcttccgctattgctccgtgaaaaccatagaaagtcaatcccctcagaataagtttgtctcc |
37410760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University