View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9126_low_12 (Length: 253)
Name: NF9126_low_12
Description: NF9126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9126_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 3672043 - 3671824
Alignment:
| Q |
18 |
aggttagacaacatttcccataaattaaaagggacaaaatattcatcaatgatgttgtggtactgtcaaatttcattgattgaaactgtcataaaaaagt |
117 |
Q |
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| T |
3672043 |
aggttagacaacatttcccataaattaaaagggacaaaatattcatcaatgatgttgtggtactgtcaaatttcattgattgaaactgtcataaaaaagt |
3671944 |
T |
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| Q |
118 |
gatttcaatgtgaatatagttacaggaaaatagtatacataaatttcaagaatggtttcttggcatgacaacttggtgttgaaagatattactgcataaa |
217 |
Q |
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| T |
3671943 |
gatttcaatgtgaatatagttacaggaatatagtatacataaattccaagaatgggttcttggcatgacaacttggtgttgaaagatattactgcataaa |
3671844 |
T |
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| Q |
218 |
gtgaatatagtatacacaca |
237 |
Q |
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| T |
3671843 |
gtgaatatagtatacacaca |
3671824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 21733182 - 21733397
Alignment:
| Q |
18 |
aggttagacaacatttcccataaattaaaagggacaaaatattcatcaatgatgttgtggtactgtcaaatttcattgattgaaactgtcataaaaaagt |
117 |
Q |
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| T |
21733182 |
aggttagacagcatttcccataaattaaaaggggcagaatattcatcaatgatgttgtggtattgtcaaatgtcaatgattgaaactgtcataaaaaagt |
21733281 |
T |
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| Q |
118 |
gatttcaatgtgaatatagttacaggaaaatagtatacataaatttcaagaatggtttcttggcatgacaacttggtgttgaaagatattactgcataaa |
217 |
Q |
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| T |
21733282 |
gatttcaatgtgaatatagttacaggaatatagtatacataaattccacgaatgggttcatggcatgataacttggtgttgaaaaagattactgcataaa |
21733381 |
T |
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| Q |
218 |
gtgaatatagtataca |
233 |
Q |
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| T |
21733382 |
gtgaatatagtataca |
21733397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 44518504 - 44518418
Alignment:
| Q |
18 |
aggttagacaacatttcccataaattaaaagggacaaaatattcatcaatgatgttgtggtactgtcaaatttcattgattgaaact |
104 |
Q |
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| T |
44518504 |
aggttagacagcatatcccataaattaaaagggacagaatattcatcaatgatgttgtggtactgtcaaatgtcaatgatcgaaact |
44518418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 42448428 - 42448379
Alignment:
| Q |
178 |
tggcatgacaacttggtgttgaaagatattactgcataaagtgaatatagta |
229 |
Q |
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| T |
42448428 |
tggcatgacaacttggtgttgaaagagattgctgc--agagtgaatatagta |
42448379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 6613078 - 6613129
Alignment:
| Q |
178 |
tggcatgacaacttggtgttgaaagatattactgcataaagtgaatatagta |
229 |
Q |
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| T |
6613078 |
tggcacgacaacttggtgttgaaagagatcactgcataaagtgaatatagta |
6613129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 26171598 - 26171554
Alignment:
| Q |
178 |
tggcatgacaacttggtgttgaaagatattactgcataaagtgaa |
222 |
Q |
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| T |
26171598 |
tggcatgataacttggtgttgaaagagattactgcataaagtgaa |
26171554 |
T |
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