View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9126_low_14 (Length: 237)
Name: NF9126_low_14
Description: NF9126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9126_low_14 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 41447 - 41656
Alignment:
| Q |
13 |
ataatactatatcaacactttggttgatttgacttagtcaaaattaatatagcagcactttaattcttcaaaattaatatagcagcaaacatgcagtatt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41447 |
ataatactatatcaacactttggttgatttgacttagtcaaaattaatatagcagcactttaattcttcaaaattaatatagcagcaaacatgcagtatt |
41546 |
T |
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| Q |
113 |
tcatttagatcataaaaagtcacctttcatagcctttgttgttttcctgcttcaaggaatgaacaccctcagttaatatatcaagaaagttgttcatgat |
212 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41547 |
tcatatagatcataaaaagtcacctttcatagcctttgttgttttcctgcttcaaggaatgaacaccatcagttaatatatcaagaaagttgttcatgat |
41646 |
T |
|
| Q |
213 |
gctttgttgt |
222 |
Q |
| |
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|||||||||| |
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| T |
41647 |
gctttgttgt |
41656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 34777 - 34986
Alignment:
| Q |
13 |
ataatactatatcaacactttggttgatttgacttagtcaaaattaatatagcagcactttaattcttcaaaattaatatagcagcaaacatgcagtatt |
112 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34777 |
ataatactatagcagcactttggttgatttgacttagtcaaaattaatatagcagcactttaattcttcaaaactaatatagcagcaaacatgcagtatt |
34876 |
T |
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| Q |
113 |
tcatttagatcataaaaagtcacctttcatagcctttgttgttttcctgcttcaaggaatgaacaccctcagttaatatatcaagaaagttgttcatgat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34877 |
tcatttagatcataaaaagtcacctttcatagcctttgttgttttcatgcttcaaggaatgaacacccccagttaatatatcaagaaagttgttcatgat |
34976 |
T |
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| Q |
213 |
gctttgttgt |
222 |
Q |
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|||||||||| |
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| T |
34977 |
gctttgttgt |
34986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 27445911 - 27445702
Alignment:
| Q |
13 |
ataatactatatcaacactttggttgatttgacttagtcaaaattaatatagcagcactttaattcttcaaaattaatatagcagcaaacatgcagtatt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27445911 |
ataatactatatcaacactttggttgatttgacttagtcaaaattaatatagcagcactttaattcttcaaaattaatatagcagcaaacatgcagtatt |
27445812 |
T |
|
| Q |
113 |
tcatttagatcataaaaagtcacctttcatagcctttgttgttttcctgcttcaaggaatgaacaccctcagttaatatatcaagaaagttgttcatgat |
212 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27445811 |
tcatatagatcataaaaagtcacctttcatagcctttgttgttttcctgcttcaaggaatgaacaccatcagttaatatatcaagaaagttgttcatgat |
27445712 |
T |
|
| Q |
213 |
gctttgttgt |
222 |
Q |
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|||||||||| |
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| T |
27445711 |
gctttgttgt |
27445702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 14455584 - 14455648
Alignment:
| Q |
13 |
ataatactatatcaacactttggttgatttgacttagtcaaaattaatatagcagcactttaatt |
77 |
Q |
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||||||||||| || ||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
14455584 |
ataatactatagcagcactttggttgatttgacttaatcaaaattaatatagcaacactttaatt |
14455648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 47247117 - 47247045
Alignment:
| Q |
107 |
agtatttcatttagatcataaaaagtcacctttcatagcctttgttgttttcctgcttcaaggaatgaacaccc |
180 |
Q |
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| T |
47247117 |
agtatttcatctacatcatagaaagtcaccttttatatt-tttgttgttttcctgcttcaatgaatgaacaccc |
47247045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 198
Target Start/End: Original strand, 15580651 - 15580731
Alignment:
| Q |
119 |
agatcataaaaagtcacctttcatagcctttgttg-ttttcctgcttcaaggaatgaacaccctcagttaatatatcaaga |
198 |
Q |
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|||||| |||||||||||||| |||||||||||| ||||||||||| || ||| ||||| || |||||||| || ||||| |
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| T |
15580651 |
agatcagaaaaagtcaccttttgtagcctttgttgcttttcctgctttaatgaaagaacaaccccagttaatctagcaaga |
15580731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 42312296 - 42312374
Alignment:
| Q |
107 |
agtatttcatttagatcataaaaagtcacctttcatagcctttgttgttttcctgcttcaaggaatgaacaccctcagtt |
186 |
Q |
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| T |
42312296 |
agtatttcatctacatcagagaaagtcaccttttatatt-tttgttcttttcctgcttcaatgaatgaacacccccagtt |
42312374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 8333897 - 8333836
Alignment:
| Q |
104 |
tgcagtatttcatttagatcataaaaagtcacctttcatagcctttgttg-ttttcctgctt |
164 |
Q |
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||||||||||||| ||||||| |||| ||||||||| ||| |||||||| ||||||||||| |
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| T |
8333897 |
tgcagtatttcatctagatcagaaaatgtcaccttttgtagactttgttgcttttcctgctt |
8333836 |
T |
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