View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9126_low_2 (Length: 636)
Name: NF9126_low_2
Description: NF9126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9126_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 491; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 15 - 619
Target Start/End: Complemental strand, 32629175 - 32628569
Alignment:
| Q |
15 |
acatcaaaagtattctgaaagaaagatagaagaaacaggtatatatggaagtagcgaaggtactacacatgaatggaggcgttggagaaaccagctatgc |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32629175 |
acatcaaaagtattctgaaagaaagatagaagaaacaggtatatatggaagtagctaaggtactacacatgaatggaggcgttggagaaaccagctatgc |
32629076 |
T |
|
| Q |
115 |
aaacaactccttagttcaggtattttatacata----actttgtaagagaaatgtttggatcatatacattaatatattgatgacacatcgttttttggt |
210 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| |
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| T |
32629075 |
aaacaactccttagttcaggtattttatacatacataactttgtaagagaaatgtttggatcacatatattaatatattgatgacacatcgtttcttggt |
32628976 |
T |
|
| Q |
211 |
tgaggtaaataagaatttgaaatgacaactacatattcatcaataaaagatagtagaattattcatgttgagtcgacattaaccttgaaatgattaattt |
310 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
32628975 |
tgaggtaaataagaatttgacatgacaactacatattcatcaataaaagatagtagaattattcatgatgagttgacattaaccttgaaatgattaattt |
32628876 |
T |
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| Q |
311 |
atcttacattgttta------tgttgttaaataatataagacgaataaattattttgattaaggctaatttagcatagataactttatctaccttttatt |
404 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32628875 |
gtcttacattgtttatgtttatgttgttaaataatataagacaaataaattattttg----------atttagcatagataactttatctaccttttatt |
32628786 |
T |
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| Q |
405 |
gatggattaataagaattttcttt--tgttacttggaaagagaaaggaagcatgacgttgagagagttgtgagatctgaatttttatcttccgactccca |
502 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32628785 |
gatggattaataagaattttcttttatgttacttggaaagagaaaggaagcatgacgttgagagagttgtgagatctgaatttttatcttccgactccca |
32628686 |
T |
|
| Q |
503 |
atatgttccatacccaattttattattattttacaacataattggttctaaattggtaaatgacacctcgtattcaatggaaaatatactctgtaaatgc |
602 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32628685 |
atatgttccatacccaattttattattattttacaacataattgtttctaaattggtaaatgacacctcgtattcaatggaaaatatactctgtaaatgc |
32628586 |
T |
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| Q |
603 |
aaccaaacggtggaata |
619 |
Q |
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||||||||||||||||| |
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| T |
32628585 |
aaccaaacggtggaata |
32628569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 32710169 - 32710112
Alignment:
| Q |
80 |
cacatgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggtat |
137 |
Q |
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| T |
32710169 |
cacatgaatggaggtgttggagaagcaagctatgcaaacaactccttagttcaggtat |
32710112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 32705244 - 32705168
Alignment:
| Q |
59 |
atggaagtagcgaaggtactacacatgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggt |
135 |
Q |
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|||||| |||| ||||| ||||||||||||||||||| |||||| | || |||||| | ||||||||| ||||||| |
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| T |
32705244 |
atggaattagcaaaggtgctacacatgaatggaggcgctggagatgcaagttatgcagataactccttacttcaggt |
32705168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 27737678 - 27737613
Alignment:
| Q |
78 |
tacacatgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggtattttata |
143 |
Q |
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|||||||||||||| || ||| |||| | ||||||||||||||||||||| ||||||||| ||||| |
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| T |
27737678 |
tacacatgaatggaagccttgcagaagcaagctatgcaaacaactccttacttcaggtatattata |
27737613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 5812248 - 5812169
Alignment:
| Q |
59 |
atggaagtagcgaaggtactacacatgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggtatt |
138 |
Q |
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||||||||||| | ||||||| |||||||||| | |||| |||| | |||||||||||||||||||| |||||||||| |
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| T |
5812248 |
atggaagtagctcaagtactacccatgaatggaagtgttgaagaagcaagctatgcaaacaactccttgcttcaggtatt |
5812169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 8028711 - 8028773
Alignment:
| Q |
74 |
gtactacacatgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggta |
136 |
Q |
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||||| |||||||||||||| |||||||||| |||||| |||| ||||||||| |||||||| |
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| T |
8028711 |
gtactccacatgaatggaggaattggagaaacaagctattcaaataactccttacttcaggta |
8028773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 21945124 - 21945064
Alignment:
| Q |
75 |
tactacacatgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggt |
135 |
Q |
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|||||||||||||||||||||| | ||| | ||||||||||||||||||| | ||||||| |
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| T |
21945124 |
tactacacatgaatggaggcgtcgatgaagcaagctatgcaaacaactcctcacttcaggt |
21945064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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