View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9126_low_4 (Length: 582)
Name: NF9126_low_4
Description: NF9126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9126_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 490; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 60 - 565
Target Start/End: Complemental strand, 8549486 - 8548981
Alignment:
| Q |
60 |
gttggtcttttaccatctaataggtaaggtattagttctattttttctttaatatgtcacaattttactctaagttcctgggttatagactcatgtgcta |
159 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8549486 |
gttggtcttttaccatctaataggtaaggtattagttctattttttctttaatatgtcacaattttactctaagttcctgggttatagactcatgtgcta |
8549387 |
T |
|
| Q |
160 |
gttatcatatatgtgattcattcttataatgaaattgctcccatacacataaaattgttctctagtaattttgcaatattaaaacagtttggaaccattc |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8549386 |
gttatcatatatgtgattcattcttataatgaaattgctcccatacacgtaaaattgttttctagtaattttgcaatattaaaacagtttggaaccattc |
8549287 |
T |
|
| Q |
260 |
atttttcttcatattttataatcacaagtgtattatatgagtcagagttcaacttcaatttagtttctatttcaaaagtactgtgtaattcatcaaattg |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8549286 |
atttttcttcatattttataatcacaagtgtattatatgagtcagagttcaacttcaatttagtttctatttcaaaagtactgtgtaattcatcaaattg |
8549187 |
T |
|
| Q |
360 |
aacaatgacattcaatggtttccaatgcttaattcatgaaatgaatacaccgaagatggtcaatcctggtgataagagagaaaagttatactactttaca |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8549186 |
aacaatgacattcaatggtttccaatgcttaattcatgaaatgaatacaccgaagatggtcaatcctggtgataagagagaaaagttatactactttaca |
8549087 |
T |
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| Q |
460 |
ctttcaaaaaatcttgcttgttcaacaagcaaagtcatccacacatcttctcctttaccagacagagctcaacaacctcttctccctgtgcttgtggatt |
559 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8549086 |
ctttcaaaaaatcttgcttgttcaacaagcaaagtcatccacacatcttctcctttaccagacagagctcaacaacctcctctccctgtgcttgtggatg |
8548987 |
T |
|
| Q |
560 |
atcatc |
565 |
Q |
| |
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|||||| |
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| T |
8548986 |
atcatc |
8548981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 341 - 396
Target Start/End: Original strand, 28032983 - 28033038
Alignment:
| Q |
341 |
tgtgtaattcatcaaattgaacaatgacattcaatggtttccaatgcttaattcat |
396 |
Q |
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|||||||||||| ||| |||||||||| ||| |||||||| ||||||||||||||| |
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| T |
28032983 |
tgtgtaattcattaaactgaacaatgaaatttaatggttttcaatgcttaattcat |
28033038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 272
Target Start/End: Original strand, 28032887 - 28032980
Alignment:
| Q |
179 |
attcttataatgaaattgctcccatacacataaaattgttctctagtaattttgcaatattaaaacagtttggaaccattcatttttcttcata |
272 |
Q |
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||||||| |||||||||| | |||||||||||||||| |||||||||||| ||||| || || || ||||| |||||||||| |||||| |
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| T |
28032887 |
attcttacaatgaaattgtttccatacacataaaatttacgactagtaattttgaaatatctaagcatttaggaacaattcatttttattcata |
28032980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 60 - 174
Target Start/End: Complemental strand, 22464793 - 22464679
Alignment:
| Q |
60 |
gttggtcttttaccatctaataggtaaggtattagttctattttttctttaatatgtcacaattttactctaagttcctgggttatagactcatgtgcta |
159 |
Q |
| |
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|||||||||| ||||||| | ||| |||||| ||||| || | ||| |||| ||||||||||||||||| ||||| ||| | |||| |||||||||| |
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| T |
22464793 |
gttggtctttcaccatctgagaggcaaggtactagtttcatctcttccttaacttgtcacaattttactctcagttcttggatcgtagattcatgtgcta |
22464694 |
T |
|
| Q |
160 |
gttatcatatatgtg |
174 |
Q |
| |
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|| |||||||||||| |
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| T |
22464693 |
gtgatcatatatgtg |
22464679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 2985403 - 2985516
Alignment:
| Q |
61 |
ttggtcttttaccatctaataggtaaggtattagttctattttttctttaatatgtcacaattttactctaagttcctgggttatagactcatgtgctag |
160 |
Q |
| |
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|||||| || ||||||| | ||| |||||| ||||| |||| |||||||| ||||| ||||||||||||||||| ||| | ||||| ||| | ||||| |
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| T |
2985403 |
ttggtcattcaccatctgacaggcaaggtactagtttcatttcttctttaacttgtcataattttactctaagttcttggatcatagattcaggagctag |
2985502 |
T |
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| Q |
161 |
ttatcatatatgtg |
174 |
Q |
| |
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| | ||||| |||| |
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| T |
2985503 |
tgaccatatctgtg |
2985516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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