View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9126_low_8 (Length: 401)
Name: NF9126_low_8
Description: NF9126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9126_low_8 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 161 - 385
Target Start/End: Original strand, 6445730 - 6445954
Alignment:
| Q |
161 |
tagctactctaatctcatagatcattaggagaaaacattcattgttagatctctgcattaatgatcaagtattcacgactaagtaacattataaatttgt |
260 |
Q |
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| T |
6445730 |
tagctactctaatctcatagatcattaggagaaaacattcattgttagatctctccattaatgatcaagtattcacgattaagtaacattataaatttgt |
6445829 |
T |
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| Q |
261 |
ttatgaacattaaattacttttgatattgattgatctatcttaatagtcaatctatgttaattggaatatagggcttacttcaacaatttatgaattaat |
360 |
Q |
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| T |
6445830 |
ttatgaacattaaattacttttgatattgattgatctatcttaatagtcaatctatgttaattggaatatagggcttacttcaacaatttatgaattaat |
6445929 |
T |
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| Q |
361 |
aacttgttcgcaaatatttagtttt |
385 |
Q |
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| T |
6445930 |
aacttgttcgcaaatatttagtttt |
6445954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 6e-56; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 22 - 176
Target Start/End: Complemental strand, 11825072 - 11824918
Alignment:
| Q |
22 |
tatttttcattcattctaatcaccaatggtacactatttatataagttgatgcatactcatgaccgtatcaactacaaaatggcaatgatagttatacta |
121 |
Q |
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| T |
11825072 |
tatttttcattcattctaatcaccaatggtacactatttatataaactaatgcatactcatgaacgtaacaactgcaaaatggcaatgacagttatatta |
11824973 |
T |
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| Q |
122 |
gaattcctaaataacttgttactagtcaaagataaagcatagctactctaatctc |
176 |
Q |
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| T |
11824972 |
gaattcctaaataacttgttactagtcaaagataaagcatagttaaactaatctc |
11824918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 1495823 - 1495961
Alignment:
| Q |
22 |
tatttttcattcattctaatcaccaatggtacactatttatataagttgatgcatactcatgaccgtatcaactacaaaatggcaatgatagttatacta |
121 |
Q |
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| T |
1495823 |
tatttttc-ttcattctaatcaccaatggtacactatttatataagttgatg-atactcatgaccgtaacaactacaaaatggcaattatagttatacta |
1495920 |
T |
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| Q |
122 |
gaattcctaaataacttgttactagtcaaagataaagcata |
162 |
Q |
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| T |
1495921 |
gaatttctaaataacttgttactagtaaaagataaagcata |
1495961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 34 - 162
Target Start/End: Complemental strand, 23090065 - 23089937
Alignment:
| Q |
34 |
attctaatcaccaatggtacactatttatataagttgatgcatactcatgaccgtatcaactacaaaatggcaatgatagttatactagaattcctaaat |
133 |
Q |
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| T |
23090065 |
attctaatcaccaatggtacactatttatataacttgatgcatactcatgaccgtaacaactacaaaatgacaatgatagttattctagaattcctaaat |
23089966 |
T |
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| Q |
134 |
aacttgttactagtcaaagataaagcata |
162 |
Q |
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| T |
23089965 |
aacttgttactagtaaaagataaagcata |
23089937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 160
Target Start/End: Complemental strand, 21097579 - 21097477
Alignment:
| Q |
61 |
atataagttgatgcatactcatgaccgtatcaactacaaaatggcaatgatagtta------tactagaattcctaaataacttgttactagtcaaagat |
154 |
Q |
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| T |
21097579 |
atataagctgatgcatactcataactataacaactacaaaataacaatgatagttaatgttatagtagaattcctaaataacttgttacta---aaagat |
21097483 |
T |
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| Q |
155 |
aaagca |
160 |
Q |
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| T |
21097482 |
aaagca |
21097477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 2200068 - 2200017
Alignment:
| Q |
94 |
ctacaaaatggcaatgatagttatactagaattcctaaataacttgttacta |
145 |
Q |
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| T |
2200068 |
ctacaaaataacaatgatagttatactagaatttctaaataacttgctacta |
2200017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 43610 - 43700
Alignment:
| Q |
61 |
atataagttgatgcatactcatgaccgtatcaactacaaaatggcaatgatagtta------tactagaattcctaaataacttgttacta |
145 |
Q |
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| T |
43610 |
atataagctgatgcatactcataactataacaactgcaaaataacaatgatagttaatgttatagtagaattcctaaataacttgttacta |
43700 |
T |
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