View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9127_low_1 (Length: 759)
Name: NF9127_low_1
Description: NF9127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9127_low_1 |
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| [»] scaffold0276 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 277 - 740
Target Start/End: Original strand, 3670517 - 3670982
Alignment:
| Q |
277 |
tgaagaacatttaatttggaattagaacgttactcgttagcttggatcctttgtagtcctccggtcggtgcataaaattttgaaccattggatttgaggt |
376 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| || |||||||||||||| ||||||||||||||||||| |
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| T |
3670517 |
tgaagaacatttaatttggaattagaacgttactcgtcagcttggatcctctgtagtcctccagttggtgcataaaatttcgaaccattggatttgaggt |
3670616 |
T |
|
| Q |
377 |
gcaactcaatccaacggtcgagatcttgttacaccgatttgatgactctagaggatctattttccacttatcatgcatgcttttgtgtatattataggaa |
476 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3670617 |
gcaactcaatccaacggtcgagatcttgctacaccgatttgatgactctagaggatctattttccacttatcatgcatgcttttgtgtatattataggaa |
3670716 |
T |
|
| Q |
477 |
ttctagtctaagaaattgttatagacatctactaatttaactattagaatataaaatattcattgtataatttgtttattttctaattaactttcgtgta |
576 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| |||||||||||| ||||| |
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| T |
3670717 |
ttctagtctaagaagttgttatagacatctactaatttaactattagaatataaaatatccattgcataatttatttatttcctaattaacttttgtgta |
3670816 |
T |
|
| Q |
577 |
ataatagttttcatttaaataacaaaatgtattttatt--nnnnnnngaaaacaaagacaggcacgagaatgcccatcttacacactagttaccaataaa |
674 |
Q |
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||| |||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3670817 |
atattagttttcatttaaataacaaaatgtattttattaaaaaaaaaaaaaaaaaaaacaggcacgagaatgcccatcttacacactagttgtcaataaa |
3670916 |
T |
|
| Q |
675 |
aactacgactcaataaaggatagaatccaagctggcatcaaagaaaccactcgtcatggttccttg |
740 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3670917 |
aactacgactcaataaaggatagaatccaagctggcatcaaagaaaccactcgtcacagttccttg |
3670982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 3670206 - 3670481
Alignment:
| Q |
1 |
tgaagggaaacataaccatgatgtacctctaggaagaggaatttcaagcagtagcataaacagaacttctcttaacaacaatacatgtaatgttacacct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3670206 |
tgaagggaaacataaccatgatgtacctctaggaagaggaatttcaagcagtagcataaacagtacttctcttaacaacaatacatgtaatgttacacct |
3670305 |
T |
|
| Q |
101 |
ataaggccttcagcagtgactaattattctagcttagcaaattttacaaattcacttcatgattcaaagctaccaacttctgaaaatcaagaacattttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3670306 |
ataaggccttcagcagtgactaattattctagcttagcaaattttacaaattcacttcatgattcaaagctaccaacttctgaaaatcaagaacattttc |
3670405 |
T |
|
| Q |
201 |
agctggaca---tgatgaattctaaaagctttttggacagatcaattggttcaaataccaattctgaacaatacgc |
273 |
Q |
| |
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||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3670406 |
agctggacatgttgatgaattctagaagctttttggacagatcaattggttcaaataccaattctgaacaatacgc |
3670481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 546
Target Start/End: Complemental strand, 49211880 - 49211849
Alignment:
| Q |
515 |
aactattagaatataaaatattcattgtataa |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
49211880 |
aactattagaatataaaatattcattgtataa |
49211849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 552
Target Start/End: Original strand, 55157627 - 55157661
Alignment:
| Q |
518 |
tattagaatataaaatattcattgtataatttgtt |
552 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
55157627 |
tattagaatataaaatattcattgtataaattgtt |
55157661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 518 - 547
Target Start/End: Complemental strand, 3673456 - 3673427
Alignment:
| Q |
518 |
tattagaatataaaatattcattgtataat |
547 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
3673456 |
tattagaatataaaatattcattgtataat |
3673427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 630 - 730
Target Start/End: Complemental strand, 9891921 - 9891822
Alignment:
| Q |
630 |
agacaggcacgagaatgcccatcttacacactagttaccaataaaaactacgactcaataaaggatagaatccaagctggcatcaaagaaaccactcgtc |
729 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9891921 |
agacaggcacgagaatggccatcttacacactagttaccaataaaaactacaacttaataaaggatagaatccaagct-gcatcaaagaaaccactcgtc |
9891823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 545 - 603
Target Start/End: Original strand, 9891982 - 9892040
Alignment:
| Q |
545 |
aatttgtttattttctaattaactttcgtgtaataatagttttcatttaaataacaaaa |
603 |
Q |
| |
|
||||| ||||||| |||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
9891982 |
aatttatttatttcctaattaacttttgtgtaatattagttttcatttaaataacaaaa |
9892040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 546
Target Start/End: Original strand, 4125478 - 4125509
Alignment:
| Q |
515 |
aactattagaatataaaatattcattgtataa |
546 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
4125478 |
aactattagaatataaaatattcattgtataa |
4125509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 546
Target Start/End: Complemental strand, 24507897 - 24507866
Alignment:
| Q |
515 |
aactattagaatataaaatattcattgtataa |
546 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
24507897 |
aactattagaatataaaatattcattgtataa |
24507866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 546
Target Start/End: Original strand, 7725536 - 7725567
Alignment:
| Q |
515 |
aactattagaatataaaatattcattgtataa |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
7725536 |
aactattagaatataaaatattcattgtataa |
7725567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0276 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0276
Description:
Target: scaffold0276; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 516 - 546
Target Start/End: Complemental strand, 2139 - 2109
Alignment:
| Q |
516 |
actattagaatataaaatattcattgtataa |
546 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2139 |
actattagaatataaaatattcattgtataa |
2109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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