View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9127_low_2 (Length: 696)

Name: NF9127_low_2
Description: NF9127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9127_low_2
NF9127_low_2
[»] chr2 (17 HSPs)
chr2 (262-696)||(5586352-5586786)
chr2 (12-539)||(5592346-5592855)
chr2 (12-264)||(5586077-5586329)
chr2 (286-557)||(5575896-5576167)
chr2 (305-539)||(5572884-5573118)
chr2 (16-202)||(5575607-5575793)
chr2 (436-559)||(5582176-5582299)
chr2 (580-696)||(5576256-5576365)
chr2 (12-57)||(5572667-5572712)
chr2 (12-57)||(5580486-5580531)
chr2 (627-696)||(5592953-5593022)
chr2 (652-696)||(5573241-5573285)
chr2 (619-694)||(12052087-12052162)
chr2 (638-696)||(5582477-5582535)
chr2 (576-616)||(5582382-5582423)
chr2 (654-696)||(5558827-5558869)
chr2 (162-200)||(5580576-5580614)
[»] chr3 (1 HSPs)
chr3 (654-691)||(7017100-7017137)


Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 262 - 696
Target Start/End: Original strand, 5586352 - 5586786
Alignment:
Q  262 aatcatttagtgaaagtaaaagtgaaacacaaagttcaagtggatacctgtaaattcaaagataactcttcaattagagcttctgcgtactgctgagggc 361  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5586352 aatcatttagtgaaagtaaaagtgaaacacaaagttcaaggggatacctgtaaattcaaagataactcttcaattagagcttctgcgtactgctgagggc 5586451  T
Q  362 tataaatgtggcttgttggatataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatataagcatttattaaggtattc 461  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5586452 tataaatgtgtcttgttggatataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatataagcatttattaaggtattc 5586551  T
Q  462 ttgagctttgttaagacttccaagtctgctagcaatttgagaaattataactttgtgattttttaactgaaatcccaaactgatgacaaaaccctgtagc 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5586552 ttgagctttgttaagacttccaagtctgctagcaatttgagaaattataactttgtgattttttaactgtaatcccaaactgatgacaaaaccctgtagc 5586651  T
Q  562 aataccaatttatttaaagatgaacaatcaaagaaatgaaaaggctctttgatttctaatttatgtaaaccttagccatgcttgtctcggtacgaattcc 661  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5586652 aatacgaatttatttaaagatgaacaatcaaagaaatgaaaaggctctttgatttctaatttatgtaaaccttagccatgcttgtctcggtacgaattcc 5586751  T
Q  662 agctgcgccagatgcatagttcacacctttgagta 696  Q
    ||||||||||||||| |||||||||||||||||||    
T  5586752 agctgcgccagatgcgtagttcacacctttgagta 5586786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 12 - 539
Target Start/End: Original strand, 5592346 - 5592855
Alignment:
Q  12 agcagagaacttattattgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcaatgtcattttgctcctcaacacaagacccatctgtc 111  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5592346 agcagagaacttattattgaaatgatccactaaagatttaagcttgaaatcaaaaatggatgcaatgtcattttgctcctcaacacaagacccatatgtc 5592445  T
Q  112 ccatgagtaaagatggcacttggagtgcagcccaataggcctaacccaggtaacacatattttcttgctccaatttcatgtaaagcctgttccatgtacc 211  Q
     ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  5592446 tcatgagtaaggatggcacttggagtgcagcccaataggcctaacccaggtaacacatattttcttgctccaatttcatgtaaagcctgttacatatacc 5592545  T
Q  212 aaatgcctctattataaaccatgatattcataactaatgtaacttccattaatcatttagtgaaagtaaaagtgaaacacaaagttcaagtggatacctg 311  Q
    |||||| ||| |||||||||||||||||||||                  ||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  5592546 aaatgcttctgttataaaccatgatattcata------------------aatcatttagtaaaagcaaaagtgaaacacaaagttcaagtggatacctg 5592627  T
Q  312 taaattcaaagataactcttcaattagagcttctgcgtactgctgagggctataaatgtggcttgttggatataattggggaagaaagtaattatttatg 411  Q
    ||||||||||||||||||||||||||||  |||||| ||||||| ||||||||||| || ||||| | ||||||||||||||||||||||||||||||||    
T  5592628 taaattcaaagataactcttcaattagattttctgcatactgctcagggctataaacgttgcttgatagatataattggggaagaaagtaattatttatg 5592727  T
Q  412 taatcattactgccaatatgcacataatataagcatttattaaggtattcttgagctttgttaagacttccaagtctgctagcaatttgagaaattataa 511  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||  | |||||||  ||||||||||||||||| |||||    
T  5592728 taatcattactgccaatatgcacataatacaagcatttgttaaggtattcttgagctttgtcaattcctccaagttggctagcaatttgagaaactataa 5592827  T
Q  512 ctttgtgattttttaactgaaatcccaa 539  Q
    || |||||||| ||||||| ||||||||    
T  5592828 ctctgtgatttcttaactgtaatcccaa 5592855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 5586077 - 5586329
Alignment:
Q  12 agcagagaacttattattgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcaatgtcattttgctcctcaacacaagacccatctgtc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5586077 agcagagaacttattattgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcgatgtcattttgctcctcaacacaagacccatctgtc 5586176  T
Q  112 ccatgagtaaagatggcacttggagtgcagcccaataggcctaacccaggtaacacatattttcttgctccaatttcatgtaaagcctgttccatgtacc 211  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5586177 ccatgagtaaagatggcacttggagtgcagcccaatagacctaacccagataacacatattttcttgctccaatttcatgtaaagcctgttccatgtacc 5586276  T
Q  212 aaatgcctctattataaaccatgatattcataactaatgtaacttccattaat 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5586277 aaatgcctctattataaaccatgatattcataactaatgtaacttccattaat 5586329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 286 - 557
Target Start/End: Original strand, 5575896 - 5576167
Alignment:
Q  286 aaacacaaagttcaagtggatacctgtaaattcaaagataactcttcaattagagcttctgcgtactgctgagggctataaatgtggcttgttggatata 385  Q
    ||||||| ||||  ||||||||||  |||||| ||||||||||||| ||||||||||||||| || |||| |||||||||||| || |||||||| || |    
T  5575896 aaacacagagtttgagtggataccaataaatttaaagataactcttgaattagagcttctgcatattgctcagggctataaatttgacttgttgggtaga 5575995  T
Q  386 attggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatataagcatttattaaggtattcttgagctttgttaagacttccaag 485  Q
    |||| ||| |||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||  ||||||||||||||||||||| || || | ||||    
T  5575996 attgaggacgaaagtaattgtttatgtaatcattactgccaatattcacataatacaagcatttgctaaggtattcttgagctttgtcaataccttcaag 5576095  T
Q  486 tctgctagcaatttgagaaattataactttgtgattttttaactgaaatcccaaactgatgacaaaaccctg 557  Q
    ||||||||||||| |||||| ||||||||||||||||| |||||| |||||||||||||| |||||||||||    
T  5576096 tctgctagcaattcgagaaactataactttgtgattttctaactgtaatcccaaactgataacaaaaccctg 5576167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 305 - 539
Target Start/End: Original strand, 5572884 - 5573118
Alignment:
Q  305 atacctgtaaattcaaagataactcttcaattagagcttctgcgtactgctgagggctataaatgtggcttgttggatataattggggaagaaagtaatt 404  Q
    ||||| ||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| |||||||| || ||||||||||||||||||||    
T  5572884 ataccagtaaattcaaagataactcttgaattagagcttctgcatactgctcagggctataaatgtgacttgttgggtagaattggggaagaaagtaatt 5572983  T
Q  405 atttatgtaatcattactgccaatatgcacataatataagcatttattaaggtattcttgagctttgttaagacttccaagtctgctagcaatttgagaa 504  Q
     ||||||||||| ||||| ||||||| ||||||||| |||||||| |||||||||| ||||||||||| || || |||||||||||||||||||||||||    
T  5572984 gtttatgtaatcgttacttccaatattcacataatacaagcatttgttaaggtattgttgagctttgtcaatacctccaagtctgctagcaatttgagaa 5573083  T
Q  505 attataactttgtgattttttaactgaaatcccaa 539  Q
    | ||||||| |||||||| ||||||| ||||||||    
T  5573084 actataactctgtgatttcttaactgtaatcccaa 5573118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 5575607 - 5575793
Alignment:
Q  16 gagaacttattattgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcaatgtcattttgctcctcaacacaagacccatctgtcccat 115  Q
    |||||||||||||||||||||||||||| | |||||||||||||||  |||||  |||||  | |||||| ||| ||||| || ||||| | ||| ||||    
T  5575607 gagaacttattattgaaatgatccactaaaaatttaagcttgaaattgaaaatcaatgcaggggcattttcctcatcaacgcaggacccgtttgttccat 5575706  T
Q  116 gagtaaagatggcacttggagtgcagcccaataggcctaacccaggtaacacatattttcttgctccaatttcatgtaaagcctgtt 202  Q
    ||||||||||||||||||| ||||||||||| |||||||||||   ||||||||||||||| |||||||| |||||||||| |||||    
T  5575707 gagtaaagatggcacttggtgtgcagcccaaaaggcctaaccctactaacacatattttctagctccaatgtcatgtaaagtctgtt 5575793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 436 - 559
Target Start/End: Original strand, 5582176 - 5582299
Alignment:
Q  436 taatataagcatttattaaggtattcttgagctttgttaagacttccaagtctgctagcaatttgagaaattataactttgtgattttttaactgaaatc 535  Q
    ||||| |||||||| |||||||||| || ||   ||| || || |||||||||||||||||||||||||| ||| ||||||||||| |||||||| ||||    
T  5582176 taatacaagcatttgttaaggtattgttcagaactgtcaatacctccaagtctgctagcaatttgagaaactattactttgtgattctttaactgtaatc 5582275  T
Q  536 ccaaactgatgacaaaaccctgta 559  Q
    |||| ||||| ||| |||||||||    
T  5582276 ccaagctgataacagaaccctgta 5582299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 580 - 696
Target Start/End: Original strand, 5576256 - 5576365
Alignment:
Q  580 gatgaacaatcaaagaaatgaaaaggctctttgatttctaatttatgtaaaccttagccatgcttgtctcggtacgaattccagctgcgccagatgcata 679  Q
    |||||||||||||| ||||||||||||||||||||    |||||||    ||| |||  |||||||||||| |||||||||||||||| |||||||||||    
T  5576256 gatgaacaatcaaataaatgaaaaggctctttgatc---aatttat----accgtagttatgcttgtctcgatacgaattccagctgcaccagatgcata 5576348  T
Q  680 gttcacacctttgagta 696  Q
    ||| |||||||||||||    
T  5576349 gttaacacctttgagta 5576365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 5572667 - 5572712
Alignment:
Q  12 agcagagaacttattattgaaatgatccactagagatttaagcttg 57  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  5572667 agcagagaacttattattgaaatgttccactagagatttaagcttg 5572712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 5580486 - 5580531
Alignment:
Q  12 agcagagaacttattattgaaatgatccactagagatttaagcttg 57  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  5580486 agcagagaacttattattgaaatgttccactagagatttaagcttg 5580531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 627 - 696
Target Start/End: Original strand, 5592953 - 5593022
Alignment:
Q  627 taaaccttagccatgcttgtctcggtacgaattccagctgcgccagatgcatagttcacacctttgagta 696  Q
    ||||||||||||  |  ||||||  |||||||||||||| ||||||||||||||||||||||||||||||    
T  5592953 taaaccttagccgagtatgtctccatacgaattccagctccgccagatgcatagttcacacctttgagta 5593022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 652 - 696
Target Start/End: Original strand, 5573241 - 5573285
Alignment:
Q  652 tacgaattccagctgcgccagatgcatagttcacacctttgagta 696  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  5573241 tacgaattccagctccgccagatgcatagttcacacctttgagta 5573285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 619 - 694
Target Start/End: Complemental strand, 12052162 - 12052087
Alignment:
Q  619 aatttatgtaaaccttagccatgcttgtctcggtacgaattccagctgcgccagatgcatagttcacacctttgag 694  Q
    ||||||| ||||| |||| ||||||||||||| |||||||||| ||| |  || ||||||| ||||||||||||||    
T  12052162 aatttatttaaactttagtcatgcttgtctcgatacgaattcctgctccctcatatgcataattcacacctttgag 12052087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 638 - 696
Target Start/End: Original strand, 5582477 - 5582535
Alignment:
Q  638 catgcttgtctcggtacgaattccagctgcgccagatgcatagttcacacctttgagta 696  Q
    |||||||||||||  ||||||||||||| | | |||||||||||||||||||| |||||    
T  5582477 catgcttgtctcgacacgaattccagctccacgagatgcatagttcacaccttagagta 5582535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 576 - 616
Target Start/End: Original strand, 5582382 - 5582423
Alignment:
Q  576 taaagatgaacaatcaaagaaatgaa-aaggctctttgattt 616  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  5582382 taaagatgaacaatcaaagaaatgaagaaggctctttgattt 5582423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 654 - 696
Target Start/End: Original strand, 5558827 - 5558869
Alignment:
Q  654 cgaattccagctgcgccagatgcatagttcacacctttgagta 696  Q
    |||||||||||||| |||||||||||||| |||||||| ||||    
T  5558827 cgaattccagctgcaccagatgcatagttaacacctttaagta 5558869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 5580576 - 5580614
Alignment:
Q  162 taacacatattttcttgctccaatttcatgtaaagcctg 200  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  5580576 taacacatattttcttgctccaatgtcatgtagagcctg 5580614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 654 - 691
Target Start/End: Original strand, 7017100 - 7017137
Alignment:
Q  654 cgaattccagctgcgccagatgcatagttcacaccttt 691  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  7017100 cgaattccagctgagccagatgcatagttaacaccttt 7017137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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