View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9127_low_4 (Length: 622)
Name: NF9127_low_4
Description: NF9127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9127_low_4 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 578; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 18 - 615
Target Start/End: Original strand, 38813089 - 38813686
Alignment:
| Q |
18 |
ggaacaaagttggaccaatccaaaatttgtcagcaggtttagactctaaactcttcaagttgaaacaagatgccctgctttcataatagaagtagatgca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38813089 |
ggaacaaagttggaccaatccaaaatttgtcagcaggtttagactctaaactcttcaagttgaaacaagatgccctgctttcataatagaagtagatgca |
38813188 |
T |
|
| Q |
118 |
gttttcttcacacccatagtaatctcgagccaacaatgcaaaatttgtgtctttatccaaaacaaacgaaacaccacccaaatcttttacttttaaccgt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
38813189 |
gttttcttcacacccatagtaatctcgagccaacaatgcaaaatttgtgtctttatccaaaacaaacgaaacatcacccaaatcttttacttttaaccat |
38813288 |
T |
|
| Q |
218 |
ttaccccattcttgatcaagcttataaacttccacaaaaacggccttcaagaagtaaccccttttgtaatacctttcatcattgatatataaatcaacca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38813289 |
ttaccccattcttgatcaagcttataaacttccacaaaaacggccttcaagaagtaaccccttttgtaatacctttcatcattgatatataaatcaacca |
38813388 |
T |
|
| Q |
318 |
catatagacctccatcatactctactaattgcttcttgtttatgttagaattcacccttatatgcctattttcagcacaatggtacatgttttttggtga |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38813389 |
catatagacctccatcatactctactaattgcttcttgtttatgttagaattcacccttatatgcctattttcagcacaatggtacatgttttttggtga |
38813488 |
T |
|
| Q |
418 |
aaattgaaccaacttcaaggaaagagcattgatccagaaaattgttcccattttatccacaacataaagttgtcccttgtaatgtattatatcatcaaaa |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38813489 |
aaattgaaccaacttcaaggaaagagcattgatccagaaaattgttcccattttatccacaacataaagttgtcccttgtaatgtattatatcatcaaaa |
38813588 |
T |
|
| Q |
518 |
tatttgttttctctacaatcatcctttaacatgatattctccttttctccaatattggaaacagtcaactctttatcattatgcagtgcaaacaccat |
615 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
38813589 |
tatttgttttctctacaatcatcatttaacatgatattttccttttctccaatattggaaacagtcaactctttatcattatgcagtgcaaagaccat |
38813686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 114 - 540
Target Start/End: Original strand, 38825084 - 38825504
Alignment:
| Q |
114 |
tgcagttttcttcacacccatagtaatctcgagccaacaatgcaaaatttgtgtctttatccaaaacaaacgaaacac--cacccaaatcttttactttt |
211 |
Q |
| |
|
|||| ||| ||||||| || || ||||||||||||||||||||||| |||| ||||||| ||||||||||||||||| |||||||||||||||| | | |
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|
| T |
38825084 |
tgcaatttccttcacatccgtaataatctcgagccaacaatgcaaagtttgagtctttacccaaaacaaacgaaacatatcacccaaatcttttacatat |
38825183 |
T |
|
| Q |
212 |
aaccgtttaccccattcttgatcaagcttataaacttccacaaaaacggccttcaagaagtaaccccttttgtaatacctttcatcattgatatataaat |
311 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||| |||| || ||||||||||||| |||| ||||||| |||||||||| | ||||| | || |
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|
| T |
38825184 |
aaccatttaccccattcttgatcaagcttatatactttcacacgaatagccttcaagaagtgacccaatttgtaaaacctttcatcgtcaatatacatat |
38825283 |
T |
|
| Q |
312 |
caaccacatatagacctccatcatactctactaattgcttcttgtttatgttagaattcacccttatatgcctattttcagcacaatggtacatgttttt |
411 |
Q |
| |
|
|||||||| | ||| ||||||| ||||||||||||| || |||| | | |||| || ||||| || |||||| ||||| | | |||||| |
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|
| T |
38825284 |
caaccacacagagatttccatcaaactctactaattgtttattgtatgcaacatgattcttccatatattactcttttcaccacaa---aagaagttttt |
38825380 |
T |
|
| Q |
412 |
tggtgaaaattgaaccaacttcaaggaaagagc---attgatccagaaaattgttcccattttatccacaacataaagttgtcccttgtaatgtattata |
508 |
Q |
| |
|
||||||||| ||||||||||| ||||| | ||| ||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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|
| T |
38825381 |
tggtgaaaactgaaccaactttaaggataaagcattatttatccagaaaattgttcccattttatccacaaca--------tcccttgtaaagtattata |
38825472 |
T |
|
| Q |
509 |
tcatcaaaatatttgttttctctacaatcatc |
540 |
Q |
| |
|
||||||||||| |||||||||| || |||||| |
|
|
| T |
38825473 |
tcatcaaaatacttgttttctccaccatcatc |
38825504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 284 - 546
Target Start/End: Original strand, 38810670 - 38810932
Alignment:
| Q |
284 |
taatacctttcatcattgatatataaatcaaccacatatagacctccatcatactctactaattgcttcttgtttatgttagaattcacccttatatgcc |
383 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||| |||| | ||| ||||||||||||| ||| || ||| | | | | |||||||||||||||| |
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|
| T |
38810670 |
taatacctttcatcattaatatacaaatcaaccacataaagactttcattgtactctactaatttcttgttttttgtatcacagttcacccttatatgcc |
38810769 |
T |
|
| Q |
384 |
tattttcagcacaatggtacatgttttttggtgaaaattgaaccaacttcaaggaaagagcattgatccagaaaattgttcccattttatccacaacata |
483 |
Q |
| |
|
| |||| ||||| | ||| ||||||||||||||||||||||||||||||||| | |||||| ||| |||||||||||| | | ||||| |||||| |
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|
| T |
38810770 |
tctttttgtcacaacaggacaagttttttggtgaaaattgaaccaacttcaaggacaaagcatttatctagaaaattgttcatttatcatccataacata |
38810869 |
T |
|
| Q |
484 |
aagttgtcccttgtaatgtattatatcatcaaaatatttgttttctctacaatcatcctttaa |
546 |
Q |
| |
|
||||||||| || ||| |||||||||||| |||| | ||||| ||| || |||||||||||| |
|
|
| T |
38810870 |
aagttgtccattataaagtattatatcataaaaaaaaatgtttactccaccatcatcctttaa |
38810932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 38823623 - 38823717
Alignment:
| Q |
18 |
ggaacaaagttggaccaatccaaaatttgtcagcaggtttagactctaaactcttcaagttgaaacaagatgccctgctttcataatagaagtag |
112 |
Q |
| |
|
||||||||||||||| | |||||| ||| |||||| |||| ||||||| ||| ||||||||||||| | | |||| |||| ||||||||||| |
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|
| T |
38823623 |
ggaacaaagttggacaaggccaaaaaatgttagcaggcttagcctctaaattctccaagttgaaacaataagtcctgtcttcacaatagaagtag |
38823717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 18 - 550
Target Start/End: Complemental strand, 35521276 - 35520744
Alignment:
| Q |
18 |
ggaacaaagttggaccaatccaaaatttgtcagcaggtttagactctaaactcttcaagttgaaacaagatgccctgctttcataatagaagtagatgca |
117 |
Q |
| |
|
||||||||||||||| | |||||| |||||||| |||| ||||||| ||||||||||||||||||| ||| || ||| ||||||| |||||||| |
|
|
| T |
35521276 |
ggaacaaagttggacaaggccaaaaaatgtcagcaaccttagtctctaaattcttcaagttgaaacaagaagccttgtgatcaaaatagaaatagatgca |
35521177 |
T |
|
| Q |
118 |
gttttcttcacacccatagtaatctcgagccaacaatgcaaaatttgtgtctttatccaaaacaaacgaaacaccacccaaatcttttacttttaaccgt |
217 |
Q |
| |
|
||| ||||| | ||||| |||||| |||| ||||||||||| |||| ||||||| ||||||||| |||||| |||||||||||||||||||||||| | |
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|
| T |
35521176 |
atttccttcaaatccataataatcttgagctaacaatgcaaagtttgagtctttactcaaaacaaatgaaacatcacccaaatcttttacttttaaccat |
35521077 |
T |
|
| Q |
218 |
ttaccccattcttgatcaagcttataaacttccacaaaaacggccttcaagaagtaaccccttttgtaatacctttcatcattgatatataaatcaacca |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||| ||||||||||| ||||| | ||||||| |
|
|
| T |
35521076 |
ttaccccattcttgatcaagcttataaacttccacaaaaacatccttcaaatagtaaccccatttgtaatatctttcatcattaatatacaggtcaacca |
35520977 |
T |
|
| Q |
318 |
catatagacctccatcatactctactaattgcttcttgtttatgttagaattcacccttatatgcctattttcagcacaatggtacatgttttttggtga |
417 |
Q |
| |
|
|||| |||| |||||||||||||||||||| |||||||||| | || ||||||||||||||||| |||||| ||||| ||||| |||||| ||||| |
|
|
| T |
35520976 |
catagagacttccatcatactctactaatttcttcttgttttcgcaagcattcacccttatatgcccattttcttcacaacagtacaagtttttaggtga |
35520877 |
T |
|
| Q |
418 |
aaattgaaccaacttcaaggaaagagcattgatccagaaaattgttcccattttatccacaacataaagttgtcccttgtaatgtattatatcatcaaaa |
517 |
Q |
| |
|
||| ||||||||||| || || | ||||| || |||||| |||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||| |
|
|
| T |
35520876 |
aaactgaaccaacttgaaagacaaagcatggaaccagaatattgttcccattttatccacaacataaagttggcccttgtaaagtatcatatcatcaaaa |
35520777 |
T |
|
| Q |
518 |
tatttgttttctctacaatcatcctttaacatg |
550 |
Q |
| |
|
| | | |||||| || ||| |||| ||||||| |
|
|
| T |
35520776 |
caatgggtttctccaccatcgtcctctaacatg |
35520744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 212 - 514
Target Start/End: Original strand, 35548574 - 35548873
Alignment:
| Q |
212 |
aaccgtttaccccattcttgatcaagcttataaacttccacaaaaacggccttcaagaagtaaccccttttgtaatacctttcatcattgatatataaat |
311 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| || ||||||||| |||| | || || | || | ||| |||| |||||| ||||| |||| |
|
|
| T |
35548574 |
aaccatttaccccattcttgatcaagcttataaattttcacaaaaacaaccttgtataaatattgc---ttatgatagcttttatcattaatatacaaat |
35548670 |
T |
|
| Q |
312 |
caaccacatatagacctccatcatactctactaattgcttcttgtttatgttagaattcacccttatatgcctatt-ttc--agcacaatggtacatgtt |
408 |
Q |
| |
|
|||||||||| ||| ||||||||| |||||||| |||||||| ||| | | ||| ||||||| ||| ||| | || ||| | ||||| ||||| || |
|
|
| T |
35548671 |
caaccacatagagatttccatcatattctactaactgcttcttctttttatcagatttcacccatatgtgcttcttattcctatcacaacagtacaactt |
35548770 |
T |
|
| Q |
409 |
ttttggtgaaaattgaaccaacttcaaggaaagagcattgatccagaaaattgttcccattttatccacaacataaagttgtcccttgtaatgtattata |
508 |
Q |
| |
|
| |||||||| |||||||||||||| | | || |||||||||||||||||| || ||| ||||||||||||||||||| || ||| | | |||||| |
|
|
| T |
35548771 |
t---ggtgaaaactgaaccaacttcaaagtcaaaggattgatccagaaaattgtcccgttttcatccacaacataaagttgttccctgtgaagaattata |
35548867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 413 - 485
Target Start/End: Original strand, 34864856 - 34864928
Alignment:
| Q |
413 |
ggtgaaaattgaaccaacttcaaggaaagagcattgatccagaaaattgttcccattttatccacaacataaa |
485 |
Q |
| |
|
|||||| ||||||||||||| ||||| | ||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
34864856 |
ggtgaacattgaaccaacttaaaggatgaacaattgatccagaaaataattccacttttatccacaacataaa |
34864928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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