View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9127_low_7 (Length: 440)

Name: NF9127_low_7
Description: NF9127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9127_low_7
NF9127_low_7
[»] chr5 (3 HSPs)
chr5 (12-419)||(28136246-28136655)
chr5 (30-76)||(12478324-12478370)
chr5 (56-89)||(22817195-22817228)
[»] chr4 (1 HSPs)
chr4 (30-88)||(39439259-39439317)
[»] chr1 (2 HSPs)
chr1 (41-88)||(44363999-44364046)
chr1 (46-76)||(4785044-4785074)
[»] chr8 (3 HSPs)
chr8 (34-88)||(31586217-31586271)
chr8 (47-88)||(5041196-5041237)
chr8 (35-75)||(27219851-27219891)
[»] chr3 (3 HSPs)
chr3 (41-83)||(13635634-13635676)
chr3 (29-75)||(21110706-21110752)
chr3 (60-88)||(14774140-14774168)
[»] chr6 (1 HSPs)
chr6 (30-75)||(414669-414714)


Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 12 - 419
Target Start/End: Original strand, 28136246 - 28136655
Alignment:
Q  12 cagagaaacacgacacggacactgacacatgtcagacaccagacacgtcttcgatcagaagtgtcaatgctatagagcttgtcagttacgtttttattaa 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28136246 cagagaaacacgacacggacactgacacatgtcagacaccagacacgtcttcgatcagaagtgtcagtgctatagagcttgtcagttacgtttttattaa 28136345  T
Q  112 tagcagtagcctataaaatgcaaaccatctaagtacaattatgcacatatttaacatttggaaaatcattcttttttcgctgtcaagtaaacttgtccac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28136346 tagcagtagcctataaaatgcaaaccatctaagtacaattatgcacatatttaacatttggaaaatcattcttttttcgctgtcaagtaaacttgtccac 28136445  T
Q  212 tattgcaatatgatttgacagaaactgaaagttaaactaattggagttagtgtaattatagggagttagtgtccaaatttgccactttcaaaatttgttg 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||| |||||||||||||||||||    
T  28136446 tattgcaatatgatttgacagaaactgaaagttaaactaattggagttagcgtccttatagggagttagtgtccaaattttccactttcaaaatttgttg 28136545  T
Q  312 tcgaatcacatcccactgatgattcgtgtcgc--nnnnnnnnnnnngttcacacttaaaatgatgatagcataccatactataaagcacatactcaaaca 409  Q
    |||||| |||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28136546 tcgaattacatcccactgatgattcgtgtcgcttttttttttttttgttcacacttaaaatgatgatagcataccatactataaagcacatactcaaaca 28136645  T
Q  410 cggacaccac 419  Q
    ||||||||||    
T  28136646 cggacaccac 28136655  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 12478324 - 12478370
Alignment:
Q  30 acactgacacatgtcagacaccagacacgtcttcgatcagaagtgtc 76  Q
    ||||| ||||||||||||||||||||||| |||| ||||||| ||||    
T  12478324 acacttacacatgtcagacaccagacacgccttccatcagaaatgtc 12478370  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 22817195 - 22817228
Alignment:
Q  56 acgtcttcgatcagaagtgtcaatgctatagagc 89  Q
    |||||||||||||||||||||| |||||||||||    
T  22817195 acgtcttcgatcagaagtgtcagtgctatagagc 22817228  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 39439259 - 39439317
Alignment:
Q  30 acactgacacatgtcagacaccagacacgtcttcgatcagaagtgtcaatgctatagag 88  Q
    |||| ||||| |||||||||||||| |||||||||||||||||||| | ||||||||||    
T  39439259 acacagacacgtgtcagacaccagagacgtcttcgatcagaagtgtaagtgctatagag 39439317  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 44363999 - 44364046
Alignment:
Q  41 tgtcagacaccagacacgtcttcgatcagaagtgtcaatgctatagag 88  Q
    |||| ||||||||||||| ||| ||| |||||||||||||||||||||    
T  44363999 tgtcggacaccagacacggctttgattagaagtgtcaatgctatagag 44364046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 76
Target Start/End: Original strand, 4785044 - 4785074
Alignment:
Q  46 gacaccagacacgtcttcgatcagaagtgtc 76  Q
    |||||||||||||||||||||||||||||||    
T  4785044 gacaccagacacgtcttcgatcagaagtgtc 4785074  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 31586271 - 31586217
Alignment:
Q  34 tgacacatgtcagacaccagacacgtcttcgatcagaagtgtcaatgctatagag 88  Q
    ||||||||||  ||||||||||| | ||| |||||||||||||| ||||||||||    
T  31586271 tgacacatgttggacaccagacatggctttgatcagaagtgtcagtgctatagag 31586217  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 5041237 - 5041196
Alignment:
Q  47 acaccagacacgtcttcgatcagaagtgtcaatgctatagag 88  Q
    |||||||||||||||||||||| |||||||| ||||| ||||    
T  5041237 acaccagacacgtcttcgatcaaaagtgtcagtgctacagag 5041196  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 27219851 - 27219891
Alignment:
Q  35 gacacatgtcagacaccagacacgtcttcgatcagaagtgt 75  Q
    ||||||||| |||||||||||||  ||||||||||||||||    
T  27219851 gacacatgttagacaccagacacaccttcgatcagaagtgt 27219891  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 13635634 - 13635676
Alignment:
Q  41 tgtcagacaccagacacgtcttcgatcagaagtgtcaatgcta 83  Q
    |||||||||||||||||| |||| ||||||||||||| |||||    
T  13635634 tgtcagacaccagacacgccttctatcagaagtgtcagtgcta 13635676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 21110752 - 21110706
Alignment:
Q  29 gacactgacacatgtcagacaccagacacgtcttcgatcagaagtgt 75  Q
    |||| ||||||||||||||||||| |||||  |||||||||||||||    
T  21110752 gacattgacacatgtcagacaccaaacacgctttcgatcagaagtgt 21110706  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 88
Target Start/End: Original strand, 14774140 - 14774168
Alignment:
Q  60 cttcgatcagaagtgtcaatgctatagag 88  Q
    |||||||||||||||||||||||||||||    
T  14774140 cttcgatcagaagtgtcaatgctatagag 14774168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 414714 - 414669
Alignment:
Q  30 acactgacacatgtcagacaccagacacgtcttcgatcagaagtgt 75  Q
    ||||| ||||||||||||||||||||||  ||||||||||| ||||    
T  414714 acactaacacatgtcagacaccagacacaacttcgatcagaggtgt 414669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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