View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9128_low_1 (Length: 566)
Name: NF9128_low_1
Description: NF9128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9128_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 16 - 554
Target Start/End: Complemental strand, 71324 - 70786
Alignment:
| Q |
16 |
agacaagattggaacagctggcctatacttagcaactaacttggctgtactcccacctcgtgtcagcacaacaatgagtttcgctctggccttattggct |
115 |
Q |
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| T |
71324 |
agacaagattggaacagctggcctatacttagcaactaacttggctgtactcccacctcgtgtcagcacaacaatgagtttcgctctggccttattggct |
71225 |
T |
|
| Q |
116 |
gtgcgtacagcagatgatgcaaggctttccaatggactcataggcaatggagtagaccttatcatctctttgaagatagcaccatagtcaagggatgatt |
215 |
Q |
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| T |
71224 |
gtgcgtacagcagatgatgcaaggctttccaatggactcataggcaatggagtagaccttatcatctctttgaagatagcaccatagtcaagggatgatt |
71125 |
T |
|
| Q |
216 |
cagcttcgatacaaatgcgggccatgattttcacagcaagttcagggtaagctccagcagcactttcaccactaagcatgacgcaatccgttccatcaag |
315 |
Q |
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| T |
71124 |
cagcttcaatacaaatgcgggccatgattttcacagcaagttcagggtaagctccagcagcactttcaccactaagcatgacgcaatccgttccatcaag |
71025 |
T |
|
| Q |
316 |
aactgcattggctacatcagttgcttcagctcgggttggccggggagatttgatcatggattcaagcatctgagtagcagtcaccacaggtttgccaaca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
71024 |
aactgcattggctacatcagttgcttcagctcgggttggccggggagatttgatcatggattcaagcatctgagtagcagtcaccacaggcttgccaaca |
70925 |
T |
|
| Q |
416 |
agattacacttataaatcatcattttctgtgctaggaatatcttctcaactgggatctccattccaagatcaccacgtgccaccatgaatgcatcagtct |
515 |
Q |
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| T |
70924 |
agattacacttataaatcatcattttctgtgctaggaatatcttctcaactgggatctccattccaagatcaccacgtgccaccatgaatgcatcagtct |
70825 |
T |
|
| Q |
516 |
cacgcaggatctcatcaaagttcatgactccctcctgat |
554 |
Q |
| |
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| T |
70824 |
cacgcaggatctcatcaaagttcatgactccctcctgat |
70786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 6e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 248 - 512
Target Start/End: Original strand, 32419312 - 32419576
Alignment:
| Q |
248 |
acagcaagttcagggtaagctccagcagcactttcaccactaagcatgacgcaatccgttccatcaagaactgcattggctacatcagttgcttcagctc |
347 |
Q |
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| T |
32419312 |
acagcgagttctggataagctccagcagcagtttcaccactaagcatgacacagtctgttccatccagaactgcatttgcaacatcagtagcttcagctc |
32419411 |
T |
|
| Q |
348 |
gggttggccggggagatttgatcatggattcaagcatctgagtagcagtcaccacaggtttgccaacaagattacacttataaatcatcattttctgtgc |
447 |
Q |
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|||||||||||||||||||||||| || || | |||||| || ||||| || || ||||| || | ||| |||||||||||||||| ||| ||||| |
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| T |
32419412 |
tggttggccggggagatttgatcattgactccaacatctgggtcgcagtaacgaccggttttccttggatattgcacttataaatcatcactttttgtgc |
32419511 |
T |
|
| Q |
448 |
taggaatatcttctcaactgggatctccattccaagatcaccacgtgccaccatgaatgcatcag |
512 |
Q |
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| T |
32419512 |
gagaaatattttctcaattggaatttccattccaaggtcaccacgtgccaccataaatgcatcag |
32419576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 248 - 510
Target Start/End: Original strand, 32425590 - 32425852
Alignment:
| Q |
248 |
acagcaagttcagggtaagctccagcagcactttcaccactaagcatgacgcaatccgttccatcaagaactgcattggctacatcagttgcttcagctc |
347 |
Q |
| |
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||||||||||| || ||||||||||||||| ||||||||||||||||||| ||||| || ||||| ||||||||||| || |||||||| |||||||||| |
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| T |
32425590 |
acagcaagttctggataagctccagcagcagtttcaccactaagcatgacacaatctgtgccatccagaactgcattcgcgacatcagtagcttcagctc |
32425689 |
T |
|
| Q |
348 |
gggttggccggggagatttgatcatggattcaagcatctgagtagcagtcaccacaggtttgccaacaagattacacttataaatcatcattttctgtgc |
447 |
Q |
| |
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|||||||| || ||||||||||| || || | |||||| || ||||| || || || || || | |||||||||||||||||||| ||| ||||| |
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| T |
32425690 |
tggttggcctaggtgatttgatcattgactccaacatctgcgttgcagtgacaaccggctttccttggatattacacttataaatcatcactttttgtgc |
32425789 |
T |
|
| Q |
448 |
taggaatatcttctcaactgggatctccattccaagatcaccacgtgccaccatgaatgcatc |
510 |
Q |
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||| ||||||||||| | ||| || ||||||||||| || |||||||||||||| |||||||| |
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| T |
32425790 |
tagaaatatcttctctattggaatttccattccaaggtcgccacgtgccaccataaatgcatc |
32425852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 248 - 510
Target Start/End: Original strand, 40596296 - 40596558
Alignment:
| Q |
248 |
acagcaagttcagggtaagctccagcagcactttcaccactaagcatgacgcaatccgttccatcaagaactgcattggctacatcagttgcttcagctc |
347 |
Q |
| |
|
||||||||||| || ||||||||||||||| ||||||| ||||||||||| || || || || || |||||||||||||| ||||| || |||||||||| |
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| T |
40596296 |
acagcaagttctggataagctccagcagcagtttcaccgctaagcatgacacagtctgtgccgtccagaactgcattggcgacatctgtagcttcagctc |
40596395 |
T |
|
| Q |
348 |
gggttggccggggagatttgatcatggattcaagcatctgagtagcagtcaccacaggtttgccaacaagattacacttataaatcatcattttctgtgc |
447 |
Q |
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|||||||| ||||||||||||||| || || | |||||| || ||||| || ||||| || || | ||| |||||||||||||||| ||||||||| |
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| T |
40596396 |
tggttggcctgggagatttgatcattgactccaacatctgggttgcagtaacaacaggctttccttggatattgcacttataaatcatcactttctgtgc |
40596495 |
T |
|
| Q |
448 |
taggaatatcttctcaactgggatctccattccaagatcaccacgtgccaccatgaatgcatc |
510 |
Q |
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||| ||||| ||||||| ||| || ||||||||||| ||||||||||||||||| |||||||| |
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| T |
40596496 |
tagaaatattttctcaattggaatttccattccaaggtcaccacgtgccaccataaatgcatc |
40596558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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