View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9128_low_4 (Length: 471)
Name: NF9128_low_4
Description: NF9128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9128_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 11 - 457
Target Start/End: Original strand, 35479410 - 35479866
Alignment:
| Q |
11 |
atggacatcaaatgaagtaatattatgatgcagcaagtataccaaaatgaagcaacccattatgcattaaagaatgtaaaataaatccaaaaatatatcg |
110 |
Q |
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| T |
35479410 |
atggacatcaaatgaagtaatattatgatgcagcaagtataccaaaatgaagcaactcattatgcattaaagaatgtaaaataaatccacaaatatatcg |
35479509 |
T |
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| Q |
111 |
tgatcaattaatttccacatactttgatgaaaaataaaagtaatcacaagaaaattaaatccaatacttggt-------------cagcataa--catta |
195 |
Q |
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| T |
35479510 |
tgatcaattaatttccacatactgtgatgaaaaataaaagtaatcacaagaaaattaaatccaatacttggtcaattactcaaatcagcaaaaaccagtg |
35479609 |
T |
|
| Q |
196 |
tctagttggattaagaactttttacaaacaaacataaaacatagcgaaaaatgtggggtgcagataggaaagacataat-ctatgtatctaattactcaa |
294 |
Q |
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| T |
35479610 |
tgtt-ttggattaagaactttttacaaacaaacataaaacatagcgaaaaatgtggggtgcagatagcaaagacataattctatgtatctaattactcaa |
35479708 |
T |
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| Q |
295 |
atccagcaaaaacaaaaattggacccgccccacattcgttcttccttaattccgaatttaccctttagaacacatctcagaagaatcaaaatcattctgg |
394 |
Q |
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| T |
35479709 |
atccagcaagagcaaaaattggaccc-----acattcgttcttccttaattccgaatttaccctttagaacacatctcagaagaatcaaaatcattctgg |
35479803 |
T |
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| Q |
395 |
aatcgaaatcaaaattcaaaaaccagagaatgcaaagaaagtgaactgctgaagtagtaaatt |
457 |
Q |
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| T |
35479804 |
aatcgaaatcaaaattcaaaaaccagagaatgcaaagaaagtgaattgctgaagtagtcaatt |
35479866 |
T |
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