View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9128_low_6 (Length: 280)
Name: NF9128_low_6
Description: NF9128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9128_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 143 - 257
Target Start/End: Original strand, 8823177 - 8823291
Alignment:
| Q |
143 |
aagattaactagcttgcaagttacaaaccatatacaacaatggctgctgtttcagcaaacttgttacctcgttgtttggcgtttcttcttcttcttgttt |
242 |
Q |
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| T |
8823177 |
aagattaactagcttgcaagttacaaaccatatacaacaatggctgctgtttcagcaaacttgttacctcgttgtttggcgttttttcttcttcttgttt |
8823276 |
T |
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| Q |
243 |
ttgtcttgtgtagct |
257 |
Q |
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| T |
8823277 |
ttgtcttgtgtagct |
8823291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 8823035 - 8823144
Alignment:
| Q |
1 |
agacaccagatttcaaaccaaaccaacatgctgcttacatataaataaacttacatttattgtgtttttcatatacttcaactgaacttaaatgctttag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8823035 |
agacaccagatttcaaaccaaaccaacatgctgcttacatataaataaacttacatttattgtgtttttcatatacttcaactgaacttaaatgctttag |
8823134 |
T |
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| Q |
101 |
taaaaatcac |
110 |
Q |
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|||||||||| |
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| T |
8823135 |
taaaaatcac |
8823144 |
T |
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