View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9129_high_7 (Length: 249)
Name: NF9129_high_7
Description: NF9129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9129_high_7 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 16287608 - 16287840
Alignment:
| Q |
1 |
ttggaaggaaatgaacaacaagatattccaatagacagtttctacaccttttcttttgttagaaaaaattaagttaaattcnnnnnnnnn-ggttgaaag |
99 |
Q |
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| T |
16287608 |
ttggaaggagaggaacaataggatattccaataaacagtttctacaccttttcttttgttagaaaaaattaagttaaattcttttttttatggttgaaag |
16287707 |
T |
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| Q |
100 |
ccaagcaggcgtcttttatttatagctaccacgactggtggaaaaattcctttctttgtatgggattacgtttgtaattttctgttttttggttgatgct |
199 |
Q |
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| T |
16287708 |
ccaatcaggcgtcttttatttatagctaccacgactggtggaaaaattcctttctttgtatgggattatgtctgtaattttctgttttttggttgatgct |
16287807 |
T |
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| Q |
200 |
ctttttgagtatcaccgagactctgtaaatatt |
232 |
Q |
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| T |
16287808 |
ctttttgaatatcattgagactctgtaaatatt |
16287840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 62247 - 62127
Alignment:
| Q |
113 |
ttttatttatagctaccacgactggtggaaaaattcctttctttgtatgggattacgtttgtaattttctgttttttggttgatgctctttttgagtatc |
212 |
Q |
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| T |
62247 |
ttttatttatagctaccaagactggtggaaaaatctctttctttgtatgg-attacgtctgtaattttatgttttttggtcgatgctcttcttgagtatc |
62149 |
T |
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| Q |
213 |
accgagactctgtaaatattgt |
234 |
Q |
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| T |
62148 |
tttgagactctgtaaatattgt |
62127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 42333057 - 42332822
Alignment:
| Q |
1 |
ttggaaggaaatgaacaacaagatattccaatagacagtttctacaccttttcttttgttagaaaaaattaagttaaattcnnnnnnnnnggttgaaagc |
100 |
Q |
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| T |
42333057 |
ttggaaggacatgaacaacatgatattccaacagacagttactaccccttctcatttgttagaaaaagtaaagttaaattcttttttat-ggctgaaagc |
42332959 |
T |
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| Q |
101 |
caagcaggcgtcttttatttata-gctaccacgactggtggaaaaattcctttctttgtatgggattacgtttgtaattttctgt-tttttggttgatgc |
198 |
Q |
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| T |
42332958 |
aaagcatgagtgttttgtttaaaagttaccacgattggtggaaacatccctttctttgtatgagattacctctgcaattttttttatttttggttggtcc |
42332859 |
T |
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| Q |
199 |
tctttttgagtatcaccgagactctgtaaatattgtc |
235 |
Q |
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| T |
42332858 |
tctttttgagtatcatcgtgactatgtaaatattgtc |
42332822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 232
Target Start/End: Complemental strand, 33334991 - 33334861
Alignment:
| Q |
102 |
aagcaggcgtcttttatttatagctaccacgactggtggaaaaattcctttctttgtatgggattacgtttgtaattttctgttttttggttgatgctct |
201 |
Q |
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||||||||| |||| |||||| || ||||| ||||||||| || || ||||||||||| || | || ||||||||| || ||||||||| |||||| |
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| T |
33334991 |
aagcaggcgaattttgattatagttatcacgattggtggaaacatcccattctttgtatgagagtgtgtatgtaattttttgagttttggttggtgctct |
33334892 |
T |
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| Q |
202 |
ttttgagtatcaccgagactctgtaaatatt |
232 |
Q |
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| T |
33334891 |
ttttgtgtagcactgtgactctgtaaatatt |
33334861 |
T |
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