View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9129_low_1 (Length: 737)

Name: NF9129_low_1
Description: NF9129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9129_low_1
NF9129_low_1
[»] chr3 (15 HSPs)
chr3 (400-725)||(30412192-30412521)
chr3 (61-181)||(30403927-30404047)
chr3 (209-320)||(30412988-30413100)
chr3 (1-64)||(30409605-30409668)
chr3 (614-725)||(30423346-30423457)
chr3 (229-320)||(30403823-30403916)
chr3 (130-181)||(30413098-30413149)
chr3 (6-64)||(30412094-30412152)
chr3 (518-600)||(30413150-30413232)
chr3 (243-320)||(30410496-30410576)
chr3 (1-61)||(30405497-30405557)
chr3 (330-390)||(30410411-30410471)
chr3 (635-682)||(30409691-30409738)
chr3 (61-96)||(30410575-30410610)
chr3 (613-702)||(30402529-30402618)
[»] chr2 (1 HSPs)
chr2 (620-702)||(31446550-31446632)


Alignment Details
Target: chr3 (Bit Score: 160; Significance: 7e-85; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 400 - 725
Target Start/End: Complemental strand, 30412521 - 30412192
Alignment:
Q  400 caaattagaattatattctccacttatagattcgcagattctttttccatgttgttcgaaaccattgctgctttagaaatgagataatgaccatttgttt 499  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30412521 caaattagaattacattctccacttatagattcacagattctttttccatgttgtttgaaaccattgctgctttagaaatgagataatgaccatttgttt 30412422  T
Q  500 tgatggttgattgtctactgttgagattaagagctccccacgccaccaactttgtcattggaattttgaagttgcttcaatgatctcacgatcttttcta 599  Q
    ||||||||||||         ||||||||||||||||  || ||||| ||| |||||| |||||  |||||||||| || ||||||||| |||| || ||    
T  30412421 tgatggttgatt--------atgagattaagagctccgtactccacctactgtgtcatcggaatgctgaagttgctccagtgatctcacaatctcttgta 30412330  T
Q  600 tttttgttc------------tttcagacagacattgaattacaatatgagctaatttcattgcttcgcgcgaagagtattggccttctatacgaacatc 687  Q
    |||||| ||            ||||||||||||||||||||| ||||||||||||||||||||| || ||||| |||||||  |||||||||||||||||    
T  30412329 tttttggtctatattctggtttttcagacagacattgaattataatatgagctaatttcattgcatcacgcgatgagtattcaccttctatacgaacatc 30412230  T
Q  688 catgacttgagagattttacgtttgctgttgagtaatg 725  Q
    ||| ||||||||||||||| ||||| ||||||||||||    
T  30412229 cataacttgagagattttatgtttgttgttgagtaatg 30412192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 61 - 181
Target Start/End: Complemental strand, 30404047 - 30403927
Alignment:
Q  61 attggaccccttcttgtctcttgttaattttcagtgcaacaaagtaatataattttatcaatttgaaacacataagtttgcataagcaacgccttaaaat 160  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| | ||||| |||||||||| |||||||||||||| ||||| ||||| ||||    
T  30404047 attggaccccttcttgtctctttttaattttcagtgcaacaaagtaatagatttttaccaatttgaaaaacataagtttgcattagcaaggccttgaaat 30403948  T
Q  161 tatagagaagaaaagcaaatg 181  Q
    |||||||||||||||||||||    
T  30403947 tatagagaagaaaagcaaatg 30403927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 209 - 320
Target Start/End: Complemental strand, 30413100 - 30412988
Alignment:
Q  209 atgtgaacgtgtgaaaactaaaaacaattatttttgtcctggctgctactttaatcggtt-ttttatgatcaagtcgaaag-aagagaagagccacaaca 306  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| | || |||||||||||||| ||||| ||||||||||||||||||    
T  30413100 atgtgaacgtgt-aaaactaaaaacaattatttttgtcctggctgctattttaattgattgttttatgatcaagttgaaagaaagagaagagccacaaca 30413002  T
Q  307 aaagcatggtagtt 320  Q
    ||| ||| ||||||    
T  30413001 aaaccatagtagtt 30412988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 30409668 - 30409605
Alignment:
Q  1 tggcctgttgttatctaatgcatgtttgcctgacataatttccaagagaacaaccccaaaattg 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30409668 tggcctgttgttatctaatgcatgtttgcctgacataatttccaagagaacaaccccaaaattg 30409605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 614 - 725
Target Start/End: Complemental strand, 30423457 - 30423346
Alignment:
Q  614 gacagacattgaattacaatatgagctaatttcattgcttcgcgcgaagagtattggccttctatacgaacatccatgacttgagagattttacgtttgc 713  Q
    ||||||||| ||||| ||| |||||||| ||| |||||||| ||||| ||||||||||||||||||||| ||||||| |||||||| || ||||||||||    
T  30423457 gacagacatcgaattgcaacatgagctactttaattgcttcacgcgatgagtattggccttctatacgagcatccataacttgagaaatcttacgtttgc 30423358  T
Q  714 tgttgagtaatg 725  Q
    |  |||||||||    
T  30423357 tcatgagtaatg 30423346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 229 - 320
Target Start/End: Complemental strand, 30403916 - 30403823
Alignment:
Q  229 aaaacaattatttttgtcctggctgctactttaatcggtt-ttttatgatcaagtcgaaag-aagagaagagccacaacaaaagcatggtagtt 320  Q
    ||||||| ||||||||||||||||||||||||||| |||| |||||||||||| | ||||| ||||||||||||||||||| | ||| ||||||    
T  30403916 aaaacaaatatttttgtcctggctgctactttaattggttgttttatgatcaacttgaaagaaagagaagagccacaacaagaccatagtagtt 30403823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 30413149 - 30413098
Alignment:
Q  130 acataagtttgcataagcaacgccttaaaattatagagaagaaaagcaaatg 181  Q
    ||||||||||| ||||||||||| || |||||||||||||||||||||||||    
T  30413149 acataagtttgtataagcaacgcattgaaattatagagaagaaaagcaaatg 30413098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 30412152 - 30412094
Alignment:
Q  6 tgttgttatctaatgcatgtttgcctgacataatttccaagagaacaaccccaaaattg 64  Q
    |||| ||||| | |||| ||||||||||||||||||||| |||||||||||||||||||    
T  30412152 tgtttttatccactgcacgtttgcctgacataatttccaggagaacaaccccaaaattg 30412094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 518 - 600
Target Start/End: Complemental strand, 30413232 - 30413150
Alignment:
Q  518 tgttgagattaagagctccccacgccaccaactttgtcattggaattttgaagttgcttcaatgatctcacgatcttttctat 600  Q
    |||||||||||||||||| |||| |||| || |  |||||| ||||| |||||| | | |||||||||||| |||||||||||    
T  30413232 tgttgagattaagagctctccacaccactaattgggtcattagaattctgaagtggttccaatgatctcacaatcttttctat 30413150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 243 - 320
Target Start/End: Complemental strand, 30410576 - 30410496
Alignment:
Q  243 tgtcctggctgctactttaatcggtt--ttttatgatcaagtcgaaag-aagagaagagccacaacaaaagcatggtagtt 320  Q
    ||||||||||||| || |||||||||  |||||||||||||| ||||| ||||  ||||||||||||||| ||| ||||||    
T  30410576 tgtcctggctgctgctctaatcggttttttttatgatcaagttgaaagaaagaatagagccacaacaaaaccatagtagtt 30410496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 30405557 - 30405497
Alignment:
Q  1 tggcctgttgttatctaatgcatgtttgcctgacataatttccaagagaacaaccccaaaa 61  Q
    ||||||||| | ||| |||||| |||| || ||||||||||||| ||||||||||||||||    
T  30405557 tggcctgttataatccaatgcacgttttcccgacataatttccaggagaacaaccccaaaa 30405497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 390
Target Start/End: Complemental strand, 30410471 - 30410411
Alignment:
Q  330 aaaataataaactaagtatgcctgtttttaattattcttccatagaagactgataagaaat 390  Q
    ||||||||||||||| ||||  |||||||||||| |||| |||||||||  ||||||||||    
T  30410471 aaaataataaactaattatgtgtgtttttaattaatctttcatagaagatagataagaaat 30410411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 682
Target Start/End: Complemental strand, 30409738 - 30409691
Alignment:
Q  635 tgagctaatttcattgcttcgcgcgaagagtattggccttctatacga 682  Q
    |||||||||||||||||||| | ||| |||||||| ||||||||||||    
T  30409738 tgagctaatttcattgcttcactcgatgagtattgtccttctatacga 30409691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 96
Target Start/End: Complemental strand, 30410610 - 30410575
Alignment:
Q  61 attggaccccttcttgtctcttgttaattttcagtg 96  Q
    |||||||| |||||||||||||||||||||||||||    
T  30410610 attggacctcttcttgtctcttgttaattttcagtg 30410575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 702
Target Start/End: Complemental strand, 30402618 - 30402529
Alignment:
Q  613 agacagacattgaattacaatatgagctaatttcattgcttcgcgcgaagagtattggccttctatacgaacatccatgacttgagagat 702  Q
    |||||||||||||||| ||||| |||| |  | |||||||||  |||  |||||||||||||||||| |   ||||||||||||| ||||    
T  30402618 agacagacattgaattgcaatacgagccacctccattgcttcatgcggcgagtattggccttctatatgggaatccatgacttgatagat 30402529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 620 - 702
Target Start/End: Complemental strand, 31446632 - 31446550
Alignment:
Q  620 cattgaattacaatatgagctaatttcattgcttcgcgcgaagagtattggccttctatacgaacatccatgacttgagagat 702  Q
    ||||||||||||||  |||||| ||||||||||||  || | ||||||||||||||||||     ||||||||||||||||||    
T  31446632 cattgaattacaatgcgagctactttcattgcttcaagcaatgagtattggccttctatatctgaatccatgacttgagagat 31446550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University