View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9129_low_10 (Length: 368)

Name: NF9129_low_10
Description: NF9129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9129_low_10
NF9129_low_10
[»] chr8 (14 HSPs)
chr8 (52-368)||(38686303-38686621)
chr8 (52-216)||(33801499-33801665)
chr8 (52-164)||(33802307-33802421)
chr8 (57-164)||(38686989-38687098)
chr8 (57-128)||(32551080-32551151)
chr8 (320-368)||(33801669-33801717)
chr8 (82-178)||(12349997-12350095)
chr8 (82-170)||(39257664-39257754)
chr8 (82-132)||(43971308-43971358)
chr8 (82-156)||(43972028-43972104)
chr8 (77-166)||(12350586-12350677)
chr8 (52-100)||(42638148-42638196)
chr8 (82-178)||(43924936-43925036)
chr8 (82-115)||(40450971-40451004)
[»] chr2 (19 HSPs)
chr2 (52-368)||(8536616-8536934)
chr2 (70-164)||(8536155-8536251)
chr2 (89-159)||(42369680-42369752)
chr2 (52-99)||(26893482-26893529)
chr2 (52-99)||(26898921-26898968)
chr2 (52-110)||(6852799-6852857)
chr2 (82-165)||(42370883-42370968)
chr2 (51-154)||(26487789-26487894)
chr2 (82-159)||(4976444-4976523)
chr2 (82-159)||(4994351-4994430)
chr2 (52-100)||(6851912-6851960)
chr2 (82-167)||(4975726-4975813)
chr2 (12-51)||(19637469-19637508)
chr2 (12-51)||(19836062-19836101)
chr2 (82-165)||(41519858-41519943)
chr2 (82-115)||(36390987-36391020)
chr2 (86-167)||(4993638-4993721)
chr2 (79-115)||(19521368-19521404)
chr2 (86-118)||(36391654-36391686)
[»] chr4 (12 HSPs)
chr4 (99-368)||(50709706-50709975)
chr4 (52-216)||(53664968-53665134)
chr4 (52-164)||(53664212-53664326)
chr4 (56-164)||(50710351-50710461)
chr4 (320-368)||(53664916-53664964)
chr4 (52-110)||(20681722-20681780)
chr4 (77-153)||(6246809-6246887)
chr4 (111-178)||(6247390-6247460)
chr4 (52-100)||(23574617-23574665)
chr4 (82-121)||(232028-232067)
chr4 (82-154)||(6680286-6680360)
chr4 (51-100)||(55511901-55511950)
[»] chr1 (11 HSPs)
chr1 (52-154)||(38618230-38618334)
chr1 (52-100)||(50354996-50355044)
chr1 (50-100)||(24976719-24976769)
chr1 (82-156)||(31788218-31788294)
chr1 (82-178)||(14924704-14924803)
chr1 (82-166)||(11469111-11469197)
chr1 (82-165)||(14925275-14925360)
chr1 (50-100)||(29334947-29334997)
chr1 (52-100)||(51610221-51610269)
chr1 (52-100)||(51976264-51976312)
chr1 (109-178)||(11469685-11469756)
[»] chr7 (9 HSPs)
chr7 (86-157)||(46757458-46757531)
chr7 (52-100)||(34852557-34852605)
chr7 (82-153)||(12732277-12732350)
chr7 (52-92)||(42344222-42344262)
chr7 (52-100)||(46814247-46814295)
chr7 (52-100)||(5004188-5004236)
chr7 (52-100)||(30916496-30916544)
chr7 (82-130)||(32548643-32548691)
chr7 (52-100)||(34853334-34853382)
[»] chr3 (6 HSPs)
chr3 (52-100)||(35432221-35432269)
chr3 (12-51)||(45517488-45517527)
chr3 (52-100)||(44406197-44406245)
chr3 (82-178)||(38337395-38337495)
chr3 (82-131)||(52398353-52398402)
chr3 (52-100)||(7359842-7359890)
[»] chr5 (6 HSPs)
chr5 (52-110)||(43589152-43589210)
chr5 (77-178)||(4554682-4554785)
chr5 (52-100)||(42993200-42993248)
chr5 (54-100)||(18153434-18153480)
chr5 (51-125)||(7495232-7495306)
chr5 (79-121)||(16690369-16690411)
[»] scaffold0189 (1 HSPs)
scaffold0189 (82-156)||(12801-12877)
[»] chr6 (4 HSPs)
chr6 (49-93)||(34716162-34716206)
chr6 (52-93)||(10607351-10607392)
chr6 (52-100)||(19063660-19063708)
chr6 (52-100)||(20687464-20687512)
[»] scaffold0129 (1 HSPs)
scaffold0129 (82-118)||(43200-43236)


Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 52 - 368
Target Start/End: Original strand, 38686303 - 38686621
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatggtt--atcatagacactc 149  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||||||||    
T  38686303 ggtggcatttagggtgggtagaaggaattcttttccaccatgggaaagtaaatattgaccattagataaagtagagaacatggttttatcatagacactc 38686402  T
Q  150 aacaccaaatcttttttcacactcaccaccaactgtctcaactctctttcttcctctcctactcgtgaaacaaaaaatatggatcttttctcataagttt 249  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38686403 aacaccaaatcttttttcacactcaccaccaattgtctcaactctctttcttcctctcctactcgtgaaacaaaaaatatggatcttttctcataagttt 38686502  T
Q  250 aggaaactatcaaagacaaaaagtcaagaattgtttctcttcnnnnnnnnccaagaacggattgcttgtattcacagtcaacaatcaccactaaatctta 349  Q
    ||||| ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||| |||| ||||| |||||||||||||||||||    
T  38686503 aggaagctatcaaagacaaaaagtcaagaattgtttctcttcaaaacaaaccaagaacggattgcttgtcttcatagtcaccaatcaccactaaatctta 38686602  T
Q  350 tgcttgcttgacaacatct 368  Q
    |||||||||||||||||||    
T  38686603 tgcttgcttgacaacatct 38686621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 52 - 216
Target Start/End: Original strand, 33801499 - 33801665
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatggtt--atcatagacactc 149  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||  |||||||||||||    
T  33801499 ggtggcatttagggtgggtagaaggaattctttcccaccatggaaaagtaaatattgaccattaaataaagtagagaacatggttttatcatagacactc 33801598  T
Q  150 aacaccaaatcttttttcacactcaccaccaactgtctcaactctctttcttcctctcctactcgtg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33801599 aacaccaaatcttttttcacactcaccaccaactgtctcaactctctttcttcctctcctactcgtg 33801665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 52 - 164
Target Start/End: Complemental strand, 33802421 - 33802307
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatgg--ttatcatagacactc 149  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||  |||||||||||||||    
T  33802421 ggtggcatttagggtgggtagaaggaattctttcccaccatgggaaagtaaatattgaccattaaataaaatagagaacatggttttatcatagacactc 33802322  T
Q  150 aacaccaaatctttt 164  Q
    |||| ||||||||||    
T  33802321 aacatcaaatctttt 33802307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 38687098 - 38686989
Alignment:
Q  57 catttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatg--gttatcatagacactcaacac 154  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||| | ||||| |||||||||||||||||   |||||||||||||||||||     
T  38687098 catttagggtgggtagaaggaattctttcccacaatgggaaagtaaatattgatcattagataaagtagagaacatgattttatcatagacactcaacat 38686999  T
Q  155 caaatctttt 164  Q
    ||||| ||||    
T  38686998 caaatatttt 38686989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 32551151 - 32551080
Alignment:
Q  57 catttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtagaga 128  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||||||| ||||| ||||||    
T  32551151 catttagggtgggtagaaggaattctttcccatcataggaaagtaaatattgaccattagataaactagaga 32551080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 33801669 - 33801717
Alignment:
Q  320 ttcacagtcaacaatcaccactaaatcttatgcttgcttgacaacatct 368  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33801669 ttcacagtcaccaatcaccactaaatcttatgcttgcttgacaacatct 33801717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 178
Target Start/End: Original strand, 12349997 - 12350095
Alignment:
Q  82 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatggtt--atcatagacactcaacaccaaatcttttttcacactcaccac 178  Q
    ||||||||||||| |||   ||| |||||||||| |||||||| |||||||| ||  |||||||||||||||||||| || ||||  ||||||||||||    
T  12349997 tttcccaccatggaaaaactaattttaaccattagataaagtaaagaacatgcttttatcatagacactcaacaccagattttttcccacactcaccac 12350095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 170
Target Start/End: Original strand, 39257664 - 39257754
Alignment:
Q  82 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacat--ggttatcatagacactcaacaccaaatcttttttcaca 170  Q
    ||||||||||||||||||  ||| || ||||||||||||||||||||||||    |||||||||| |||||||| ||||| ||||| ||||    
T  39257664 tttcccaccatgggaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaacatcaaatttttttccaca 39257754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 43971308 - 43971358
Alignment:
Q  82 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacat 132  Q
    ||||||||||||||||||  ||| || ||||||||||||||||||||||||    
T  43971308 tttcccaccatgggaaagctaattttgaccattaaataaagtagagaacat 43971358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 43972104 - 43972028
Alignment:
Q  82 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatggttat--catagacactcaacacca 156  Q
    |||||||| |||||||||| ||| |||||||||| ||||| ||||||||||  || |  ||||||||||||||||||    
T  43972104 tttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacacca 43972028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 12350677 - 12350586
Alignment:
Q  77 aattctttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatggtt--atcatagacactcaacaccaaatctttttt 166  Q
    |||| |||||||||||||||||   ||| || ||||||| |||| |||||||||||  ||  |||||||||||||||||||| || ||||||    
T  12350677 aattgtttcccaccatgggaaacctaattttgaccattagataaggtagagaacatacttttatcatagacactcaacaccagatttttttt 12350586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 42638148 - 42638196
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 100  Q
    |||||||||||||||| |||| ||||||||||| |||||||| ||||||    
T  42638148 ggtggcatttagggtgggtaggaggaattcttttccaccatgagaaagt 42638196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 43925036 - 43924936
Alignment:
Q  82 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatggtt--atcatagacactcaacaccaaatctttttt--cacactcacca 177  Q
    |||||||||||| |||||| ||| || ||| ||| || || ||||||||||  ||  |||||||||||||||||||| || ||||||  |||||||||||    
T  43925036 tttcccaccatgagaaagttaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacaccagatttttttttccacactcacca 43924937  T
Q  178 c 178  Q
    |    
T  43924936 c 43924936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 40451004 - 40450971
Alignment:
Q  82 tttcccaccatgggaaagtaaatattaaccatta 115  Q
    ||||||||||||||||||||||| ||||||||||    
T  40451004 tttcccaccatgggaaagtaaattttaaccatta 40450971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 52 - 368
Target Start/End: Complemental strand, 8536934 - 8536616
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatggtt--atcatagacactc 149  Q
    |||||||||||||||| |||||||||||||||||| ||||||| ||||||||| || ||||||| ||||||||||||||||||||  |||||||||||||    
T  8536934 ggtggcatttagggtgggtagaaggaattctttcctaccatggaaaagtaaatgttgaccattagataaagtagagaacatggttttatcatagacactc 8536835  T
Q  150 aacaccaaatcttttttcacactcaccaccaactgtctcaactctctttcttcctctcctactcgtgaaacaaaaaatatggatcttttctcataagttt 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8536834 aacaccaaatcttttttcacactcaccaccaactgtctcaactctctttcttcctctcctactcgtgaaacaaaaaatatggatcttttctcataagttt 8536735  T
Q  250 aggaaactatcaaagacaaaaagtcaagaattgtttctcttcnnnnnnnnccaagaacggattgcttgtattcacagtcaacaatcaccactaaatctta 349  Q
    ||||| ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  8536734 aggaagctatcaaagacaaaaagtcaagaattgtttctcttcaaaacaaaccaagaacggattgcttgtcttcacagtcaccaatcaccactaaatctta 8536635  T
Q  350 tgcttgcttgacaacatct 368  Q
    |||||||||||||||||||    
T  8536634 tgcttgcttgacaacatct 8536616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 8536155 - 8536251
Alignment:
Q  70 tagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatg--gttatcatagacactcaacaccaaatctttt 164  Q
    ||||||||||||||| |||||||||||||||||||||| || |||| |||||||||||||||||   ||||||||||||||||||| ||||| ||||    
T  8536155 tagaaggaattcttttccaccatgggaaagtaaatattgacgattagataaagtagagaacatgattttatcatagacactcaacatcaaatatttt 8536251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 159
Target Start/End: Original strand, 42369680 - 42369752
Alignment:
Q  89 ccatgggaaagtaaatattaaccattaaataaagtagagaacat--ggttatcatagacactcaacaccaaat 159  Q
    |||||||||||||||||||| |||||| ||||||||||||||||    |||||||||||||||||||||||||    
T  42369680 ccatgggaaagtaaatattagccattagataaagtagagaacataattttatcatagacactcaacaccaaat 42369752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 26893482 - 26893529
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaag 99  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  26893482 ggtggcatttagggtgggtagaaggaattctttcccaccatgggaaag 26893529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 26898921 - 26898968
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaag 99  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  26898921 ggtggcatttagggtgggtagaaggaattctttcccaccatgggaaag 26898968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 6852857 - 6852799
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaac 110  Q
    |||||||||||||||| |||| ||||||||||||||||||| ||||||||||| |||||    
T  6852857 ggtggcatttagggtgggtaggaggaattctttcccaccataggaaagtaaattttaac 6852799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 42370968 - 42370883
Alignment:
Q  82 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatgg--ttatcatagacactcaacaccaaatcttttt 165  Q
    ||||||||||||||||||||||||||  |||||| ||||||| ||||| || |  ||||||||||||||| ||||||||| |||||    
T  42370968 tttcccaccatgggaaagtaaatattggccattagataaagtggagaatatagttttatcatagacactcgacaccaaattttttt 42370883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 154
Target Start/End: Complemental strand, 26487894 - 26487789
Alignment:
Q  51 tggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtagaga--acatggttatcatagacact 148  Q
    ||||||||||||||||| |||| ||||||||||||| |||||| |||||| ||  || ||||||| || |||||| ||  ||||  ||||||||||| ||    
T  26487894 tggtggcatttagggtgggtaggaggaattctttcctaccatgagaaagttaagcttgaccattagattaagtagtgaccacattcttatcatagactct 26487795  T
Q  149 caacac 154  Q
    ||||||    
T  26487794 caacac 26487789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 4976523 - 4976444
Alignment:
Q  82 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatggttat--catagacactcaacaccaaat 159  Q
    |||||||| |||||||||| ||| |||||||||| ||||| ||||||||||  || |  |||||||||||||||||||||    
T  4976523 tttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccaaat 4976444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 4994430 - 4994351
Alignment:
Q  82 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatggttat--catagacactcaacaccaaat 159  Q
    |||||||| |||||||||| ||| |||||||||| ||||| ||||||||||  || |  |||||||||||||||||||||    
T  4994430 tttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccaaat 4994351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 6851912 - 6851960
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 100  Q
    |||||||||||||||| |||| ||||||||||||||| |||||||||||    
T  6851912 ggtggcatttagggtgggtaggaggaattctttcccatcatgggaaagt 6851960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 4975726 - 4975813
Alignment:
Q  82 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacat--ggttatcatagacactcaacaccaaatcttttttc 167  Q
    ||||||||||||| ||||  ||| || ||||||||||||||||||||||||    |||||||||| |||||||| || || |||||||    
T  4975726 tttcccaccatggaaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaacatcagattttttttc 4975813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 19637508 - 19637469
Alignment:
Q  12 ttggtgttcaggcttgagttgagttaaatgattcttttat 51  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  19637508 ttggggttcaggcttgagttgagttagatgattcttttat 19637469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 19836101 - 19836062
Alignment:
Q  12 ttggtgttcaggcttgagttgagttaaatgattcttttat 51  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  19836101 ttggggttcaggcttgagttgagttagatgattcttttat 19836062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 41519943 - 41519858
Alignment:
Q  82 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacat--ggttatcatagacactcaacaccaaatcttttt 165  Q
    |||||||||||||||||||   | || ||| ||||||||||||||||||||    ||| ||||||||| ||||||||||| |||||    
T  41519943 tttcccaccatgggaaagttttttttgaccgttaaataaagtagagaacatacttttaccatagacacccaacaccaaattttttt 41519858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 36390987 - 36391020
Alignment:
Q  82 tttcccaccatgggaaagtaaatattaaccatta 115  Q
    ||||||||||||||||||||||| ||||||||||    
T  36390987 tttcccaccatgggaaagtaaattttaaccatta 36391020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 4993638 - 4993721
Alignment:
Q  86 ccaccatgggaaagtaaatattaaccattaaataaagtagagaacat--ggttatcatagacactcaacaccaaatcttttttc 167  Q
    ||||||||| ||||  ||| || ||||||||||||||||||||||||    |||||||||| |||||||| || || |||||||    
T  4993638 ccaccatggaaaagctaattttgaccattaaataaagtagagaacatacttttatcatagagactcaacatcagattttttttc 4993721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 19521368 - 19521404
Alignment:
Q  79 ttctttcccaccatgggaaagtaaatattaaccatta 115  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  19521368 ttctttcccatcatgggaaagtaaatcttaaccatta 19521404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 36391686 - 36391654
Alignment:
Q  86 ccaccatgggaaagtaaatattaaccattaaat 118  Q
    ||||||||||||||||||| |||||||||||||    
T  36391686 ccaccatgggaaagtaaattttaaccattaaat 36391654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 99 - 368
Target Start/End: Original strand, 50709706 - 50709975
Alignment:
Q  99 gtaaatattaaccattaaataaagtagagaacatggtt--atcatagacactcaacaccaaatcttttttcacactcaccaccaactgtctcaactctct 196  Q
    ||||||||| || |||| |||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  50709706 gtaaatattgactattagataaagtagagaacatagttttatcatagacactcaacaccaaatcttttttcacactcaccaccaactgtc--aactctct 50709803  T
Q  197 ttcttcctctcctactcgtgaaacaaaaaatatggatcttttctcataagtttaggaaactatcaaagacaaaaagtcaagaattgtttctcttcnnnnn 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||         
T  50709804 ttcttcctctcctactcgtgaaacaaaaaatatggatcttttctcataagtttaggaagctatcaaagacaaaaagccaagaattgtttctcttcaaaac 50709903  T
Q  297 nnnccaagaacggattgcttgtattcacagtcaacaatcaccactaaatcttatgcttgcttgacaacatct 368  Q
       |||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  50709904 aaaccaagaacggattgattgtcttcacagtcaccaatcaccactaaatcttatgcttgcttgacaacatct 50709975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 52 - 216
Target Start/End: Complemental strand, 53665134 - 53664968
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatggtt--atcatagacactc 149  Q
    |||||||||||||||| ||||||||||||||||||||||||   |||||||||||| ||||||||||||||||||||||||||||  |||||||||||||    
T  53665134 ggtggcatttagggtgggtagaaggaattctttcccaccataaaaaagtaaatattgaccattaaataaagtagagaacatggttttatcatagacactc 53665035  T
Q  150 aacaccaaatcttttttcacactcaccaccaactgtctcaactctctttcttcctctcctactcgtg 216  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  53665034 aacaccaaatcttttttcacactcacctccaactgtctcaactctctttcttcctctcctactcgtg 53664968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 52 - 164
Target Start/End: Original strand, 53664212 - 53664326
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatgg--ttatcatagacactc 149  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||  |||||||||||||||    
T  53664212 ggtggtatttagggtgggtagaaggaattctttcccaccatgggaaagtaaatattgaccattagataaaatagagaacatggttttatcatagacactc 53664311  T
Q  150 aacaccaaatctttt 164  Q
    |||| ||||||||||    
T  53664312 aacatcaaatctttt 53664326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 50710461 - 50710351
Alignment:
Q  56 gcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatg--gttatcatagacactcaaca 153  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||   |||||||||||||||||||    
T  50710461 gcatttaaggtgggtagaaggaattctttcccaccatgggaaagtaaatattgaccattagataaagtagagaacatgaatttatcatagacactcaaca 50710362  T
Q  154 ccaaatctttt 164  Q
    |||||| ||||    
T  50710361 ccaaatatttt 50710351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 53664964 - 53664916
Alignment:
Q  320 ttcacagtcaacaatcaccactaaatcttatgcttgcttgacaacatct 368  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  53664964 ttcacagtcaccaatcaccactaaatcttatgcttgcttgacaacatct 53664916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 20681722 - 20681780
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaac 110  Q
    |||||||||||||||| |||| |||||||||||||||| |||||||||||||| |||||    
T  20681722 ggtggcatttagggtgggtaggaggaattctttcccactatgggaaagtaaattttaac 20681780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 6246809 - 6246887
Alignment:
Q  77 aattctttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacat--ggttatcatagacactcaaca 153  Q
    |||| ||||||||||||||||||| ||| || ||||||| |||| |||||||||||    |||||||||||||||||||    
T  6246809 aattgtttcccaccatgggaaagttaattttgaccattagataaggtagagaacatacttttatcatagacactcaaca 6246887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 6247460 - 6247390
Alignment:
Q  111 cattaaataaagtagagaaca---tggttatcatagacactcaacaccaaatcttttttcacactcaccac 178  Q
    ||||| |||||||||||||||   |  |||||||||||||||||||||| || ||||| ||||||||||||    
T  6247460 cattagataaagtagagaacatactttttatcatagacactcaacaccagatttttttccacactcaccac 6247390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 23574665 - 23574617
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 100  Q
    ||||||||||||||||  ||| ||||||||||||||||||||| |||||    
T  23574665 ggtggcatttagggtggataggaggaattctttcccaccatggaaaagt 23574617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 232067 - 232028
Alignment:
Q  82 tttcccaccatgggaaagtaaatattaaccattaaataaa 121  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  232067 tttcccaccatgggaaagtaaattttaaccattagataaa 232028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 6680360 - 6680286
Alignment:
Q  82 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatgg--ttatcatagacactcaacac 154  Q
    |||| ||||||||||||||||||||| ||||||| || ||||| ||||||| |  ||||||||||  ||||||||    
T  6680360 tttctcaccatgggaaagtaaatattgaccattagattaagtaaagaacatagttttatcatagattctcaacac 6680286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 55511901 - 55511950
Alignment:
Q  51 tggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 100  Q
    ||||||||||||||||  |||| |||||| |||||||||||| |||||||    
T  55511901 tggtggcatttagggtaggtaggaggaatactttcccaccataggaaagt 55511950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 52 - 154
Target Start/End: Original strand, 38618230 - 38618334
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtagaga--acatggttatcatagacactc 149  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||| ||  || ||||||| || |||||| ||  ||||  ||||||||||| |||    
T  38618230 ggtggcatttagggtgggtaggaggaattctttcccaccatgggaaagttaagtttgaccattagattaagtagtgaacacattcttatcatagactctc 38618329  T
Q  150 aacac 154  Q
    |||||    
T  38618330 aacac 38618334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 50355044 - 50354996
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 100  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||    
T  50355044 ggtggcatttagggtgggtaggaggaattctttcccaccatgggaaagt 50354996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 24976769 - 24976719
Alignment:
Q  50 atggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 100  Q
    |||||||||||||||||| |||| ||||||||||| |||||||||||||||    
T  24976769 atggtggcatttagggtgggtaggaggaattcttttccaccatgggaaagt 24976719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 31788294 - 31788218
Alignment:
Q  82 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacat--ggttatcatagacactcaacacca 156  Q
    ||||||||||||||||||| ||| |||||||||| ||||| ||||||||||    ||| ||||||||||||||||||    
T  31788294 tttcccaccatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacacca 31788218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 82 - 178
Target Start/End: Original strand, 14924704 - 14924803
Alignment:
Q  82 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatggtt--atcatagacactcaacaccaaatctttttt-cacactcaccac 178  Q
    ||||||||||||||||||  ||| || ||| |||||| || ||||||||||  ||  |||||||||||||||||||| || |||||| ||||||||||||    
T  14924704 tttcccaccatgggaaagctaattttgaccgttaaattaaatagagaacatatttttatcatagacactcaacaccagattttttttccacactcaccac 14924803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 11469111 - 11469197
Alignment:
Q  82 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacat--ggttatcatagacactcaacaccaaatctttttt 166  Q
    ||||||||||||||||||  ||| || ||||||| |||| |||||||||||    |||||||||||||||||||||| || ||||||    
T  11469111 tttcccaccatgggaaagctaattttgaccattagataaggtagagaacatacttttatcatagacactcaacaccagatttttttt 11469197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 14925360 - 14925275
Alignment:
Q  82 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacat--ggttatcatagacactcaacaccaaatcttttt 165  Q
    ||||||||||||||||||  ||| || ||||||| ||||| ||||||||||    |||||||||||||||||||||| || |||||    
T  14925360 tttcccaccatgggaaagctaattttgaccattagataaactagagaacatacttttatcatagacactcaacaccagattttttt 14925275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 29334997 - 29334947
Alignment:
Q  50 atggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 100  Q
    |||||| ||||||||||| |||| ||||||| |||||||||||||||||||    
T  29334997 atggtgtcatttagggtgggtaggaggaattatttcccaccatgggaaagt 29334947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 51610269 - 51610221
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 100  Q
    |||||||||||||||| |||| ||||||  |||||||||||||||||||    
T  51610269 ggtggcatttagggtgggtaggaggaatattttcccaccatgggaaagt 51610221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 51976264 - 51976312
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 100  Q
    |||||||||||||||| |||| ||||||||||| ||||||||| |||||    
T  51976264 ggtggcatttagggtgggtaggaggaattcttttccaccatggaaaagt 51976312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 11469756 - 11469685
Alignment:
Q  109 accattaaataaagtagagaacatggtt--atcatagacactcaacaccaaatcttttttcacactcaccac 178  Q
    ||||||| ||||||||||||||||  ||  |||||||||| ||||||||| || ||||  ||||||||||||    
T  11469756 accattagataaagtagagaacatacttttatcatagacattcaacaccagattttttcccacactcaccac 11469685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 46757458 - 46757531
Alignment:
Q  86 ccaccatgggaaagtaaatattaaccattaaataaagtagagaacat--ggttatcatagacactcaacaccaa 157  Q
    |||||||| ||||||||||||| ||||||| ||||||||||||||||    |||||||||||||||||||||||    
T  46757458 ccaccatgagaaagtaaatattgaccattagataaagtagagaacataattttatcatagacactcaacaccaa 46757531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 34852557 - 34852605
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 100  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||    
T  34852557 ggtggcatttagggtgggtagaaggaattcttttccaccatgggaaagt 34852605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 12732277 - 12732350
Alignment:
Q  82 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatgg--ttatcatagacactcaaca 153  Q
    |||||||||||||||||||||||||| ||||||| || | ||| ||||||| |  ||||||||||| |||||||    
T  12732277 tttcccaccatgggaaagtaaatattgaccattagatcatgtaaagaacatagttttatcatagactctcaaca 12732350  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 42344262 - 42344222
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccat 92  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  42344262 ggtggcatttagggtgggtaggaggaattctttcccaccat 42344222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 46814295 - 46814247
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 100  Q
    ||||| ||||||| || |||| |||||||||||||||||||||||||||    
T  46814295 ggtggtatttaggatgggtaggaggaattctttcccaccatgggaaagt 46814247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 5004188 - 5004236
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 100  Q
    |||| |||||||| || |||| ||||||||||| |||||||||||||||    
T  5004188 ggtgacatttaggatgggtaggaggaattcttttccaccatgggaaagt 5004236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 30916544 - 30916496
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 100  Q
    |||||||||||||||| |||| | ||||||||||||| ||||| |||||    
T  30916544 ggtggcatttagggtgggtaggaagaattctttcccatcatggaaaagt 30916496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 32548691 - 32548643
Alignment:
Q  82 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaac 130  Q
    ||||||||||||||||||| ||| ||| |||||| || |||||||||||    
T  32548691 tttcccaccatgggaaagttaatgttagccattagatcaagtagagaac 32548643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 34853382 - 34853334
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 100  Q
    |||||||||||||||| |||| |||||  |||||||||||| |||||||    
T  34853382 ggtggcatttagggtgggtaggaggaagactttcccaccataggaaagt 34853334  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 35432269 - 35432221
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||    
T  35432269 ggtggcatttagggtgggtagaaggaattctttcccaccatggaaaagt 35432221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 45517488 - 45517527
Alignment:
Q  12 ttggtgttcaggcttgagttgagttaaatgattcttttat 51  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  45517488 ttggggttcaggcttgagttgagttaaatgattcttttat 45517527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 44406197 - 44406245
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 100  Q
    |||||||||||||||| |||| | ||||||||||||||||||| |||||    
T  44406197 ggtggcatttagggtgggtaggaagaattctttcccaccatggaaaagt 44406245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 38337495 - 38337395
Alignment:
Q  82 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatggtt--atcatagacactcaacaccaaatctttttt--cacactcacca 177  Q
    ||||||||||||||||||  ||| || ||| ||| || || ||||||||||  ||  |||||||||||||||||||| || ||||||  |||||||||||    
T  38337495 tttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacaccagatttttttttccacactcacca 38337396  T
Q  178 c 178  Q
    |    
T  38337395 c 38337395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 52398353 - 52398402
Alignment:
Q  82 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaaca 131  Q
    ||||||||||||| ||||||||| |||||||||| || || |||||||||    
T  52398353 tttcccaccatggaaaagtaaattttaaccattagattaaatagagaaca 52398402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 7359890 - 7359842
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 100  Q
    |||||||||||||||| |||  |||||  ||||||||||||||||||||    
T  7359890 ggtggcatttagggtgggtaagaggaagactttcccaccatgggaaagt 7359842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 43589210 - 43589152
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaac 110  Q
    |||||||||||||||| |||| |||||||||||||||| ||||||||||| || |||||    
T  43589210 ggtggcatttagggtgggtaggaggaattctttcccactatgggaaagtagattttaac 43589152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 4554682 - 4554785
Alignment:
Q  77 aattctttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacatggtt--atcatagacactcaacaccaaatcttttttcacactca 174  Q
    |||| ||| |||||||| |||||  ||| || ||||||| ||||||||||||||||  ||  ||||||||||||||||||||  | ||||| ||||||||    
T  4554682 aattgttttccaccatgagaaagctaattttgaccattagataaagtagagaacatacttttatcatagacactcaacaccaggtttttttccacactca 4554781  T
Q  175 ccac 178  Q
    ||||    
T  4554782 ccac 4554785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 42993248 - 42993200
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 100  Q
    |||||||||||||||| |||||||||||||| ||||||||||| |||||    
T  42993248 ggtggcatttagggtgggtagaaggaattctatcccaccatggaaaagt 42993200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 18153480 - 18153434
Alignment:
Q  54 tggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 100  Q
    |||||||||||||| |||| ||||||||||| |||||||||||||||    
T  18153480 tggcatttagggtgggtaggaggaattcttttccaccatgggaaagt 18153434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 125
Target Start/End: Complemental strand, 7495306 - 7495232
Alignment:
Q  51 tggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagtaaatattaaccattaaataaagtag 125  Q
    ||||| ||||||||||| ||||  ||||||||||||||||||| |||||| ||  || ||||||| || ||||||    
T  7495306 tggtgacatttagggtgggtagggggaattctttcccaccatgagaaagttaagcttgaccattagattaagtag 7495232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 16690411 - 16690369
Alignment:
Q  79 ttctttcccaccatgggaaagtaaatattaaccattaaataaa 121  Q
    |||||| ||||||||||||||||||| |||||||||| |||||    
T  16690411 ttcttttccaccatgggaaagtaaattttaaccattagataaa 16690369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 12877 - 12801
Alignment:
Q  82 tttcccaccatgggaaagtaaatattaaccattaaataaagtagagaacat--ggttatcatagacactcaacacca 156  Q
    ||||||||||||||||||| ||| || ||||||| ||||| ||||||||||    ||||||||||||||||||||||    
T  12877 tttcccaccatgggaaagttaattttgaccattagataaactagagaacatacttttatcatagacactcaacacca 12801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 34716162 - 34716206
Alignment:
Q  49 tatggtggcatttagggtgagtagaaggaattctttcccaccatg 93  Q
    ||||||||||||||||||| ||||| ||||| |||||||||||||    
T  34716162 tatggtggcatttagggtgggtagagggaatactttcccaccatg 34716206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 10607392 - 10607351
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatg 93  Q
    |||||||||||||||| ||||| ||||| |||||||||||||    
T  10607392 ggtggcatttagggtgggtagagggaatactttcccaccatg 10607351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 19063660 - 19063708
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 100  Q
    |||||||||| ||||| |||| |||||| |||||| |||||||||||||    
T  19063660 ggtggcattttgggtgggtaggaggaatactttccaaccatgggaaagt 19063708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 20687464 - 20687512
Alignment:
Q  52 ggtggcatttagggtgagtagaaggaattctttcccaccatgggaaagt 100  Q
    |||||||||||||||  |||| |||||| |||||||||||| |||||||    
T  20687464 ggtggcatttagggtaggtaggaggaatactttcccaccataggaaagt 20687512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 43236 - 43200
Alignment:
Q  82 tttcccaccatgggaaagtaaatattaaccattaaat 118  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  43236 tttcccatcatgggaaagtaaatcttaaccattaaat 43200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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