View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9129_low_11 (Length: 361)
Name: NF9129_low_11
Description: NF9129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9129_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 6029577 - 6029242
Alignment:
| Q |
1 |
aaacctagctttttctcacactccactaggttgttctcttcttcctcttcttcctccaagatgtctccttcatcttcagtgttttcccattcgaacataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6029577 |
aaacctagctttttctcacactccactaggttgttctcttcttcctcttcttcctccaagatgtctccttcatcttcagtgttttcccattcgaacataa |
6029478 |
T |
|
| Q |
101 |
attgaaatttctcactagggttgataacacgcatcttaggttttttcgaaccttgctttttctcctgctcacactcccctaggttgttctcttcttcctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6029477 |
attgaaatttctcactagggttgataacacgcatcttaggttttttcgaaccttgcgttttctcctgctcacactcccctaggttgttctcttcttcctc |
6029378 |
T |
|
| Q |
201 |
caagatgtcttcttcctccaagatgtcttcagtgtcttcccattcgaacgtaaatcgaaatttctcactaggcttgataacacgcagcttaggttttttc |
300 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6029377 |
caagatgt------------------cttcagtgtcttcccattcgaacgtaaatcgaaatttctcactaggcttgataacacgcatcttaggttttttc |
6029296 |
T |
|
| Q |
301 |
aaacctggctttttctgatgctcacactccgctaggttataattctctgcttct |
354 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6029295 |
aaaccttgctttttctgatgctcacactccgctaggttataattctcttcttct |
6029242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 84 - 338
Target Start/End: Complemental strand, 6029641 - 6029393
Alignment:
| Q |
84 |
ttcccattcgaacataaattgaaatttctcactagggttgataacacgcatcttaggttttttcgaaccttgctttttctcctgctcacactcccctagg |
183 |
Q |
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|||||||||||| ||||| |||||||||||||||| || |||||||||||||||||||||||| ||||| ||||||| |||||||||| ||||| |
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| T |
6029641 |
ttcccattcgaaagtaaatcgaaatttctcactaggtttaataacacgcatcttaggttttttcaaacctagcttttt------ctcacactccactagg |
6029548 |
T |
|
| Q |
184 |
ttgttctcttcttcctccaagatgtcttcttcctccaagatg---------tcttcagtgtcttcccattcgaacgtaaatcgaaatttctcactaggct |
274 |
Q |
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||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||| ||||| |||||||||||||||| | |
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| T |
6029547 |
ttgttctcttcttcc---------tcttcttcctccaagatgtctccttcatcttcagtgttttcccattcgaacataaattgaaatttctcactagggt |
6029457 |
T |
|
| Q |
275 |
tgataacacgcagcttaggttttttcaaacctggctttttctgatgctcacactccgctaggtt |
338 |
Q |
| |
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|||||||||||| ||||||||||||| ||||| || |||||| |||||||||||| ||||||| |
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| T |
6029456 |
tgataacacgcatcttaggttttttcgaaccttgcgttttctcctgctcacactcccctaggtt |
6029393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 214 - 316
Target Start/End: Complemental strand, 6029665 - 6029562
Alignment:
| Q |
214 |
tcctccaagatgtcttc-agtgtcttcccattcgaacgtaaatcgaaatttctcactaggcttgataacacgcagcttaggttttttcaaacctggcttt |
312 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||| || |||||||||| ||||||||||||||||||| ||||| |
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| T |
6029665 |
tcctccaagatgtcttctagtttcttcccattcgaaagtaaatcgaaatttctcactaggtttaataacacgcatcttaggttttttcaaacctagcttt |
6029566 |
T |
|
| Q |
313 |
ttct |
316 |
Q |
| |
|
|||| |
|
|
| T |
6029565 |
ttct |
6029562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 225 - 340
Target Start/End: Complemental strand, 6034496 - 6034381
Alignment:
| Q |
225 |
gtcttcagtgtcttcccattcgaacgtaaatcgaaatttctcactaggcttgataacacgcagcttaggttttttcaaacctggctttttctgatgctca |
324 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||| ||||| || ||||||||| ||||||||||||| ||||| ||||||||| ||||| | |
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| T |
6034496 |
gtcttcagtgttttcccaatcgaacgtaaatcgaaatttctcgctaggtttagtaacacgcatcttaggttttttcgaacctagctttttcttatgctta |
6034397 |
T |
|
| Q |
325 |
cactccgctaggttat |
340 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
6034396 |
cactccgctaggttat |
6034381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 73 - 199
Target Start/End: Complemental strand, 6034495 - 6034369
Alignment:
| Q |
73 |
tcttcagtgttttcccattcgaacataaattgaaatttctcactagggttgataacacgcatcttaggttttttcgaaccttgctttttctcctgctcac |
172 |
Q |
| |
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||||||||||||||||| |||||| ||||| |||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||||| |||| || |
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| T |
6034495 |
tcttcagtgttttcccaatcgaacgtaaatcgaaatttctcgctaggtttagtaacacgcatcttaggttttttcgaacctagctttttcttatgcttac |
6034396 |
T |
|
| Q |
173 |
actcccctaggttgttctcttcttcct |
199 |
Q |
| |
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||||| ||||||| ||||| ||||||| |
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|
| T |
6034395 |
actccgctaggttattctcatcttcct |
6034369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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